Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 3.2e-51 204.9 112 100.0
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 2.4e-46 188.7 112 84.8
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 2.2e-44 182.2 112 88.4
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 1.4e-43 179.5 111 85.6
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 1.3e-41 172.9 110 79.1
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 2.3e-41 172.2 111 73.9
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 3.0e-41 171.8 112 76.8
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 3.0e-41 171.8 112 76.8
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 3.9e-41 171.4 112 76.8
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 8.7e-41 170.2 112 75.0
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 1.5e-40 169.5 112 82.1
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 1.9e-40 169.1 111 77.5
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 1.8e-38 162.5 112 77.7
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 1.2e-37 159.8 113 77.9
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 1.5e-37 159.5 109 76.1
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 1.5e-37 159.5 112 77.7
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 3.4e-37 158.3 112 80.4
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 5.9e-37 157.5 112 77.7
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 7.7e-37 157.1 112 78.6
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.3e-36 156.4 111 77.5
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.7e-36 156.0 111 77.5
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 1.7e-36 156.0 108 69.4
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 2.2e-36 155.6 108 76.9
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.1e-35 153.3 112 75.9
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 3.2e-35 151.8 111 68.5
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 5.5e-35 151.0 111 75.7
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 7.2e-35 150.6 112 75.9
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.2e-34 149.8 112 73.2
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.6e-34 149.4 111 74.8
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 4.7e-34 147.9 112 73.2
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 4.7e-34 147.9 109 73.4
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 6.1e-34 147.5 112 74.1
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 1.0e-33 146.7 115 67.8
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.0e-33 146.7 112 72.3
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.4e-33 146.4 110 63.6
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 1.8e-33 146.0 112 74.1
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 1.8e-33 146.0 110 70.0
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 1.8e-33 146.0 113 72.6
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 2.3e-33 145.6 111 75.7
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 2.3e-33 145.6 111 73.0
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 3.0e-33 145.2 112 73.2
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 3.9e-33 144.8 116 71.6
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 6.7e-33 144.1 112 73.2
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.1e-32 143.3 112 71.4
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 3.3e-32 141.7 112 73.2
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 3.3e-32 141.7 112 73.2
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 4.4e-32 141.4 112 71.4
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 4.4e-32 141.4 109 71.6
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 4.4e-32 141.4 112 69.6
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 5.7e-32 141.0 110 70.0
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 5.7e-32 141.0 112 70.5
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 5.7e-32 141.0 98 73.5
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 7.4e-32 140.6 112 67.9
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 2.2e-31 139.0 96 74.0
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 2.8e-31 138.7 114 69.3
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 4.8e-31 137.9 111 70.3
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 8.2e-31 137.1 112 67.0
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 8.2e-31 137.1 112 66.1
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 8.2e-31 137.1 112 66.1
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 8.2e-31 137.1 112 66.1
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 1.1e-30 136.7 113 68.1
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 1.8e-30 136.0 112 67.0
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 2.4e-30 135.6 112 67.0
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 2.4e-30 135.6 112 67.0
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 2.4e-30 135.6 112 68.8
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 2.4e-30 135.6 112 67.9
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 9.1e-30 133.7 111 65.8
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 1.2e-29 133.3 114 68.4
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 1.2e-29 133.3 114 68.4
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 1.2e-29 133.3 110 70.0
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 1.5e-29 132.9 111 69.4
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 1.5e-29 132.9 112 66.1
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 1.5e-29 132.9 112 65.2
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 4.5e-29 131.3 113 63.7
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 5.9e-29 131.0 108 65.7
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.0e-28 130.2 87 80.5
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.7e-28 129.4 108 63.0
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 2.9e-28 128.6 113 56.6
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 8.5e-28 127.1 112 65.2
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 1.1e-27 126.7 109 64.2
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 1.1e-27 126.7 72 86.1
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 2.5e-27 125.6 71 85.9
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 4.2e-27 124.8 115 61.7
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 9.4e-27 123.6 70 85.7
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 6.1e-26 120.9 70 85.7
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 6.1e-26 120.9 113 63.7
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 1.0e-25 120.2 115 64.3
Sopen02g017220 Solanum pennellii HOM05D005515 ORTHO05D006620 1.0e-25 120.2 72 80.6
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 1.0e-25 120.2 132 54.5
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 1.8e-25 119.4 123 59.3
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 3.9e-25 118.2 113 62.8
Sabra17G0064300 Salix brachista HOM05D005515 ORTHO05D006620 6.7e-25 117.5 106 65.1
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 8.8e-25 117.1 111 61.3
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 2.6e-24 115.5 84 65.5
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 1.3e-23 113.2 83 74.7
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 1.3e-23 113.2 206 41.3
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 1.3e-23 113.2 110 59.1
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 2.8e-23 112.1 84 75.0
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 4.8e-23 111.3 113 58.4
Ah.02g120510 Amaranthus hybridus HOM05D005515 ORTHO05D006620 9.1e-22 107.1 73 68.5
SalBow7G1491 Salvia bowleyana HOM05D005515 ORTHO05D006620 1.2e-21 106.7 113 55.8
Cfa009365 Carpinus fangiana HOM05D000048 ORTHO05D000445 2.0e-21 105.9 110 56.4
Gohir.D05G311500 Gossypium hirsutum HOM05D005515 ORTHO05D006620 4.5e-21 104.8 89 64.0
MSTRG.7999 Avicennia marina HOM05D005515 ORTHO05D006620 5.9e-21 104.4 110 54.5
SalBow2G3427 Salvia bowleyana HOM05D005515 ORTHO05D006620 7.7e-21 104.0 84 60.7
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 2.9e-20 102.1 108 58.3
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 1.1e-19 100.1 116 56.9
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 1.5e-19 99.8 112 50.0
Nn3g16471 Nelumbo nucifera HOM05D005515 ORTHO05D006620 1.5e-19 99.8 88 63.6
PGSC0003DMG401006926 Solanum tuberosum HOM05D005515 ORTHO05D006620 1.9e-19 99.4 86 62.8
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 4.2e-19 98.2 111 53.2
Ciclev10033394m.g Citrus clementina HOM05D005515 ORTHO05D006620 1.2e-18 96.7 87 62.1
Cpa.g.sc43.50 Carica papaya HOM05D005515 ORTHO05D006620 1.6e-18 96.3 88 62.5
Actinidia30652 Actinidia chinensis HOM05D005515 ORTHO05D006620 2.1e-18 95.9 60 76.7
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 2.7e-18 95.5 56 78.6
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 3.6e-18 95.1 72 63.9
COL.COLO4_20393 Corchorus olitorius HOM05D005515 ORTHO05D006620 6.1e-18 94.4 57 78.9
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 3.0e-17 92.0 116 51.7
CSS0003202 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 1.2e-16 90.1 62 74.2
CSS0037049 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 1.2e-16 90.1 62 74.2
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 1.2e-16 90.1 113 51.3
Oeu006531.1 Olea europaea HOM05D005515 ORTHO05D006620 1.2e-16 90.1 61 70.5
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 7.5e-16 87.4 115 50.4
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 9.7e-16 87.0 115 51.3
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 2.8e-15 85.5 114 51.8
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 2.8e-15 85.5 114 51.8
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 4.8e-15 84.7 112 50.0
ClCG08G010060 Citrullus lanatus HOM05D005515 ORTHO05D006620 2.4e-14 82.4 105 48.6
CDE02G3365 Ceratophyllum demersum HOM05D005515 ORTHO05D006620 3.1e-14 82.0 83 57.8
SGA_v2.0_scaffold154G37170 Striga asiatica HOM05D005515 ORTHO05D006620 5.3e-14 81.3 101 54.5
Cre08.g370300 Chlamydomonas reinhardtii HOM05D005515 ORTHO05D006620 7.0e-14 80.9 78 46.2
BcaB04g19426 Brassica carinata HOM05D005515 ORTHO05D006620 2.2e-12 75.9 82 56.1
PRCOL_00000741 Prasinoderma coloniale HOM05D005515 ORTHO05D006620 8.5e-12 73.9 95 40.0
A06p41490 Brassica napus HOM05D005515 ORTHO05D006620 4.2e-11 71.6 118 45.8
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 4.2e-11 71.6 113 43.4
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 3.6e-10 68.6 105 44.8
MCO13G114 Micromonas commoda HOM05D005515 ORTHO05D006620 4.7e-10 68.2 91 45.1
Haze_27757 Corylus avellana HOM05D005515 ORTHO05D006620 8.0e-10 67.4 64 43.8
TWI18G0205 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 2.3e-09 65.9 76 43.4
Nn4g22340 Nelumbo nucifera HOM05D001716 ORTHO05D004234 7.5e-08 60.8 60 61.7
BraA09t35966Z Brassica rapa HOM05D005515 ORTHO05D006620 1.1e-06 57.0 89 47.2
BcaC06g31020 Brassica carinata HOM05D005515 ORTHO05D006620 2.4e-06 55.8 48 58.3


User provided reference genes

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