Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 0.0e+00 1165.2 598 100.0
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 0.0e+00 1158.3 598 99.5
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 3.2e-283 978.0 665 78.6
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 1.7e-223 779.6 675 64.9
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 1.7e-215 753.1 665 62.3
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 1.2e-181 640.6 664 54.4
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 1.0e-180 637.5 665 54.0
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 1.5e-179 633.6 680 52.1
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 1.9e-179 633.3 651 54.5
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 3.6e-173 612.5 393 82.7
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 1.8e-172 610.1 664 52.1
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 2.3e-172 609.8 666 53.3
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 1.1e-171 607.4 664 51.2
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 1.2e-168 597.4 665 51.3
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.5e-168 597.0 658 51.1
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 1.5e-168 597.0 665 50.8
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 2.6e-168 596.3 650 52.9
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 1.3e-167 594.0 665 50.4
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.8e-167 592.4 680 49.6
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 5.0e-167 592.0 665 50.5
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 3.2e-166 589.3 658 51.1
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 7.2e-166 588.2 632 53.0
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.1e-165 586.6 665 50.7
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 4.7e-165 585.5 680 49.1
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 2.3e-164 583.2 640 51.2
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 3.3e-163 579.3 658 52.0
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.4e-163 578.2 680 48.8
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 8.2e-162 574.7 665 50.2
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 8.2e-162 574.7 665 50.2
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 1.4e-161 573.9 665 50.1
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 1.2e-160 570.9 665 50.1
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.6e-157 559.3 680 48.1
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 3.2e-150 536.2 662 46.8
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 5.5e-150 535.4 665 47.5
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 1.2e-149 534.3 666 47.1
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 6.1e-149 531.9 677 47.3
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 8.8e-148 528.1 666 47.0
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 1.2e-147 527.7 665 46.3
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 2.6e-147 526.6 666 46.7
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 5.7e-147 525.4 662 46.2
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 3.7e-146 522.7 665 46.9
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 1.6e-144 517.3 665 45.9
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 9.5e-142 508.1 668 46.7
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 1.6e-141 507.3 621 47.7
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 1.8e-140 503.8 665 46.0
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 1.8e-140 503.8 657 46.0
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 1.8e-140 503.8 668 46.4
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 5.2e-140 502.3 621 48.0
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 7.5e-139 498.4 661 44.9
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 1.3e-138 497.7 657 45.8
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 3.1e-137 493.0 666 44.4
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 7.0e-137 491.9 665 43.8
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 7.0e-137 491.9 665 45.1
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.3e-135 487.6 666 44.0
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 1.7e-135 487.3 598 50.5
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 2.5e-134 483.4 662 43.5
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 9.5e-134 481.5 654 43.9
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.5e-134 481.5 670 44.8
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 1.2e-133 481.1 668 45.8
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 2.3e-132 476.9 665 43.3
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 5.2e-132 475.7 703 41.3
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 6.8e-132 475.3 633 45.0
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 5.7e-131 472.2 665 44.1
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 3.7e-130 469.5 669 43.8
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 6.4e-130 468.8 661 42.8
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 1.4e-129 467.6 657 43.5
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 9.2e-129 464.9 661 42.5
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 9.2e-129 464.9 661 42.7
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 1.6e-128 464.2 674 42.9
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 1.7e-127 460.7 671 42.8
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.8e-124 450.7 699 42.9
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 1.3e-122 444.5 661 41.0
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 4.1e-121 439.5 650 41.5
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 7.0e-121 438.7 666 41.4
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 7.3e-118 428.7 666 41.7
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.4e-116 424.5 656 40.9
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 4.0e-116 422.9 665 42.4
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.9e-116 421.8 619 43.3
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 2.0e-115 420.6 659 40.2
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 3.4e-115 419.9 630 43.2
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 3.7e-114 416.4 579 42.7
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 7.1e-113 412.1 507 48.5
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 1.2e-112 411.4 621 42.8
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 2.3e-111 407.1 362 60.5
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 6.8e-108 395.6 666 39.5
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.8e-104 382.1 718 37.7
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.6e-103 378.6 555 43.4
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 8.6e-103 378.6 666 38.1
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 3.6e-101 373.2 621 40.6
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 4.7e-101 372.9 665 37.1
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 5.2e-100 369.4 666 35.6
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 1.7e-98 364.4 594 40.1
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 2.2e-98 364.0 634 36.6
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 4.9e-98 362.8 671 37.0
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 6.4e-98 362.5 706 35.8
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 2.4e-97 360.5 665 36.1
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 7.1e-97 359.0 686 36.6
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 3.5e-96 356.7 662 36.3
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 3.9e-95 353.2 501 42.3
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 6.6e-95 352.4 688 36.2
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 1.1e-94 351.7 645 37.1
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 2.0e-91 340.9 683 35.0
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 5.8e-91 339.3 664 34.5
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 2.9e-90 337.0 666 35.3
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 8.4e-90 335.5 666 34.8
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 1.9e-89 334.3 668 35.3
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 4.8e-85 319.7 692 33.1
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 3.1e-84 317.0 675 33.8
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 3.1e-84 317.0 691 33.0
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 1.5e-83 314.7 682 33.7
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 2.6e-83 313.9 666 34.1
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 3.8e-82 310.1 683 33.7
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 6.4e-82 309.3 504 40.7
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 2.4e-81 307.4 672 34.1
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 7.1e-81 305.8 687 33.3
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 1.3e-71 275.0 291 58.4
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.7e-69 266.9 239 57.3
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 1.4e-65 255.0 751 29.3
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 3.6e-64 250.4 358 41.3
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 4.6e-64 250.0 371 42.3
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.1e-60 238.8 243 53.5
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 1.8e-60 238.0 150 87.3
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 5.3e-60 236.5 243 53.1
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 4.5e-59 233.4 243 53.9
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.1e-52 212.2 283 42.8
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 9.7e-46 189.1 221 45.2
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 4.8e-45 186.8 254 42.9
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.8e-44 184.9 493 30.6
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 2.3e-39 167.9 673 26.0
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 6.3e-37 159.8 598 26.1
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 5.9e-35 153.3 324 34.9
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 7.2e-33 146.4 371 29.6
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 3.0e-31 141.0 383 31.6
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 1.3e-26 125.6 242 36.0
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.7e-26 125.2 158 47.5
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 4.2e-25 120.6 485 27.8
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 9.5e-25 119.4 92 65.2
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.6e-24 118.6 184 41.3
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 7.5e-22 109.8 84 65.5
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 2.8e-21 107.8 553 25.9
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 1.1e-17 95.9 105 49.5
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 3.0e-15 87.8 150 34.7
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 4.0e-15 87.4 174 32.8
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 7.5e-14 83.2 174 31.0
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 7.0e-12 76.6 186 29.6
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 1.7e-10 72.0 123 37.4
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 3.9e-10 70.9 151 31.1
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 2.5e-09 68.2 123 35.0
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 7.3e-09 66.6 55 52.7
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 2.8e-08 64.7 115 34.8
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 2.8e-08 64.7 105 37.1
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 6.2e-08 63.5 125 32.8
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 8.0e-08 63.2 115 33.9
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 8.0e-08 63.2 115 33.9
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 1.5e-06 58.9 189 27.5
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 3.4e-06 57.8 99 36.4
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 9.8e-06 56.2 102 34.3


User provided reference genes

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