Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08784 Corylus avellana HOM05D003241 ORTHO05D003812 2.5e-60 235.3 126 100.0
Potri.001G082100 Populus trichocarpa HOM05D003241 ORTHO05D003812 2.9e-24 115.5 94 69.1
Ciclev10000233m.g Citrus clementina HOM05D003241 ORTHO05D003812 1.4e-23 113.2 119 57.1
Cfa015650 Carpinus fangiana HOM05D003241 ORTHO05D003812 4.2e-23 111.7 99 64.6
Haze_00894 Corylus avellana HOM05D003241 ORTHO05D003812 4.2e-23 111.7 99 64.6
CiPaw.02G097400 Carya illinoinensis HOM05D003241 ORTHO05D003812 5.4e-23 111.3 99 65.7
Manes.16G074400 Manihot esculenta HOM05D003241 ORTHO05D003812 7.1e-23 110.9 93 67.7
Nn5g27739 Nelumbo nucifera HOM05D003241 ORTHO05D003812 7.1e-23 110.9 94 69.1
GSVIVG01035173001 Vitis vinifera HOM05D003241 ORTHO05D003812 7.1e-23 110.9 92 68.5
TPR.G2613 Trifolium pratense HOM05D003241 ORTHO05D003812 9.3e-23 110.5 119 55.5
arahy.Tifrunner.gnm1.ann1.2W1DSR Arachis hypogaea HOM05D003241 ORTHO05D003812 1.6e-22 109.8 92 65.2
arahy.Tifrunner.gnm1.ann1.61N80Q Arachis hypogaea HOM05D003241 ORTHO05D003812 1.6e-22 109.8 92 65.2
Cpa.g.sc115.47 Carica papaya HOM05D003241 ORTHO05D003812 1.6e-22 109.8 94 68.1
Gohir.A04G045600 Gossypium hirsutum HOM05D003241 ORTHO05D003812 1.6e-22 109.8 92 65.2
Gohir.D05G337200 Gossypium hirsutum HOM05D003241 ORTHO05D003812 1.6e-22 109.8 92 65.2
Gorai.009G361400 Gossypium raimondii HOM05D003241 ORTHO05D003812 1.6e-22 109.8 92 65.2
CARHR196380 Cardamine hirsuta HOM05D003241 ORTHO05D003812 2.1e-22 109.4 94 63.8
Duzib213G0093 Durio zibethinus HOM05D003241 ORTHO05D003812 2.1e-22 109.4 94 67.0
Phvul.011G184800 Phaseolus vulgaris HOM05D003241 ORTHO05D003812 2.1e-22 109.4 92 65.2
SEGI_01763 Sequoiadendron giganteum HOM05D003241 ORTHO05D003812 2.1e-22 109.4 92 65.2
TAR381G1550 Trochodendron aralioides HOM05D003241 ORTHO05D003812 3.5e-22 108.6 92 67.4
DCAR_019828 Daucus carota HOM05D003241 ORTHO05D003812 4.6e-22 108.2 119 54.6
Duzib268G1256 Durio zibethinus HOM05D003241 ORTHO05D003812 4.6e-22 108.2 92 66.3
TAR571G0002 Trochodendron aralioides HOM05D003241 ORTHO05D003812 4.6e-22 108.2 92 67.4
TAR625G1302 Trochodendron aralioides HOM05D003241 ORTHO05D003812 4.6e-22 108.2 92 67.4
AL6G27800 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 6.0e-22 107.8 94 62.8
Glyma.08G229600 Glycine max HOM05D003241 ORTHO05D003812 6.0e-22 107.8 92 65.2
MBI18_g28212_MAGBIO Magnolia biondii HOM05D003241 ORTHO05D003812 6.0e-22 107.8 92 68.5
Medtr1g083910 Medicago truncatula HOM05D003241 ORTHO05D003812 7.8e-22 107.5 92 65.2
Carub.0006s1500 Capsella rubella HOM05D003241 ORTHO05D003812 1.0e-21 107.1 94 62.8
Eucgr.J03092 Eucalyptus grandis HOM05D003241 ORTHO05D003812 1.0e-21 107.1 92 65.2
Lj3g0022607 Lotus japonicus HOM05D003241 ORTHO05D003812 1.0e-21 107.1 119 53.8
Ca_13374_v3 Cicer arietinum L. HOM05D003241 ORTHO05D003812 1.3e-21 106.7 92 64.1
Glyma.07G220800 Glycine max HOM05D003241 ORTHO05D003812 1.3e-21 106.7 92 64.1
PGR031G3475 Punica granatum HOM05D003241 ORTHO05D003812 1.3e-21 106.7 94 64.9
PGSC0003DMG400007426 Solanum tuberosum HOM05D003241 ORTHO05D003812 1.3e-21 106.7 119 52.9
Lalb_Chr03g0032261 Lupinus albus HOM05D003241 ORTHO05D003812 1.7e-21 106.3 92 63.0
Lalb_Chr19g0130441 Lupinus albus HOM05D003241 ORTHO05D003812 1.7e-21 106.3 92 63.0
Aa31LG11G12850 Aethionema arabicum HOM05D003241 ORTHO05D003812 2.3e-21 105.9 92 62.0
CAN.G321.38 Capsicum annuum HOM05D003241 ORTHO05D003812 3.0e-21 105.5 119 52.1
Migut.J00827 Erythranthe guttata HOM05D003241 ORTHO05D003812 3.0e-21 105.5 116 53.4
TWI32G0731 Tripterygium wilfordii HOM05D003241 ORTHO05D003812 3.0e-21 105.5 94 62.8
AagrBONN_evm.TU.Sc2ySwM_344.1153__1154 Anthoceros agrestis HOM05D003241 ORTHO05D003812 3.9e-21 105.1 123 51.2
Aqoxy4G03221 Aquilegia oxysepala HOM05D003241 ORTHO05D003812 3.9e-21 105.1 92 64.1
ClCG08G000490 Citrullus lanatus HOM05D003241 ORTHO05D003812 3.9e-21 105.1 104 58.7
MELO3C022204.2 Cucumis melo HOM05D003241 ORTHO05D003812 3.9e-21 105.1 131 50.4
CsaV3_5G040300 Cucumis sativus L. HOM05D003241 ORTHO05D003812 3.9e-21 105.1 131 50.4
Eucgr.L01432 Eucalyptus grandis HOM05D003241 ORTHO05D003812 3.9e-21 105.1 107 58.9
QL06p002249 Quercus lobata HOM05D003241 ORTHO05D003812 3.9e-21 105.1 99 62.6
QL06p002393 Quercus lobata HOM05D003241 ORTHO05D003812 3.9e-21 105.1 99 62.6
Solyc11g008470.2 Solanum lycopersicum HOM05D003241 ORTHO05D003812 3.9e-21 105.1 119 52.1
Sopen11g004250 Solanum pennellii HOM05D003241 ORTHO05D003812 3.9e-21 105.1 119 52.1
Nitab4.5_0004325g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 5.1e-21 104.8 92 62.0
Nitab4.5_0004385g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 5.1e-21 104.8 92 62.0
Lsat_1_v5_gn_1_54260 Lactuca sativa HOM05D003241 ORTHO05D003812 6.6e-21 104.4 92 63.0
ATR1098G045 Amborella trichopoda HOM05D003241 ORTHO05D003812 1.1e-20 103.6 92 64.1
BcaC04g18848 Brassica carinata HOM05D003241 ORTHO05D003812 1.1e-20 103.6 94 62.8
BcaC04g18849 Brassica carinata HOM05D003241 ORTHO05D003812 1.1e-20 103.6 94 62.8
A10p22440 Brassica napus HOM05D003241 ORTHO05D003812 1.1e-20 103.6 94 62.8
C09p60290 Brassica napus HOM05D003241 ORTHO05D003812 1.1e-20 103.6 94 62.8
BolC9t58862H Brassica oleracea HOM05D003241 ORTHO05D003812 1.1e-20 103.6 94 62.8
BraA10t44303Z Brassica rapa HOM05D003241 ORTHO05D003812 1.1e-20 103.6 94 62.8
Thhalv10012684m.g Eutrema salsugineum HOM05D003241 ORTHO05D003812 1.1e-20 103.6 94 62.8
HanXRQChr09g0244631 Helianthus annuus HOM05D003241 ORTHO05D003812 1.1e-20 103.6 92 62.0
Sed0020388 Sechium edule HOM05D003241 ORTHO05D003812 1.1e-20 103.6 131 49.6
ECA248G0833 Erigeron canadensis HOM05D003241 ORTHO05D003812 1.5e-20 103.2 92 62.0
SalBow3G1087 Salvia bowleyana HOM05D003241 ORTHO05D003812 1.9e-20 102.8 92 60.9
vmacro13976 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 1.9e-20 102.8 92 60.9
Atru.chr4.2711 Acer truncatum HOM05D003241 ORTHO05D003812 2.5e-20 102.4 104 65.4
AT5G16780 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 2.5e-20 102.4 99 59.6
Dinv09319 Davidia involucrata HOM05D003241 ORTHO05D003812 3.3e-20 102.1 92 62.0
Lj2C819G2 Lonicera japonica HOM05D003241 ORTHO05D003812 3.3e-20 102.1 92 60.9
Lj6g0011042 Lotus japonicus HOM05D003241 ORTHO05D003812 3.3e-20 102.1 120 51.7
Oeu011820.1 Olea europaea HOM05D003241 ORTHO05D003812 3.3e-20 102.1 94 60.6
Oeu058578.1 Olea europaea HOM05D003241 ORTHO05D003812 3.3e-20 102.1 92 59.8
CBR_g32002 Chara braunii HOM05D003241 ORTHO05D003812 4.3e-20 101.7 92 60.9
COL.COLO4_17461 Corchorus olitorius HOM05D003241 ORTHO05D003812 4.3e-20 101.7 100 68.0
Rhsim01G0112900 Rhododendron simsii HOM05D003241 ORTHO05D003812 4.3e-20 101.7 92 60.9
Mapoly0063s0006 Marchantia polymorpha HOM05D003241 ORTHO05D003812 5.6e-20 101.3 122 49.2
SGA_v2.0_scaffold31G12724 Striga asiatica HOM05D003241 ORTHO05D003812 5.6e-20 101.3 116 52.6
HPP92_003413 Vanilla planifolia HOM05D003241 ORTHO05D008621 5.6e-20 101.3 92 64.1
Actinidia29972 Actinidia chinensis HOM05D003241 ORTHO05D003812 9.6e-20 100.5 92 59.8
Pp3c15_10170 Physcomitrium patens HOM05D003241 ORTHO05D003812 1.3e-19 100.1 119 50.4
Dinv19008 Davidia involucrata HOM05D003241 ORTHO05D003812 4.8e-19 98.2 92 59.8
Medtr1g032020 Medicago truncatula HOM05D003241 ORTHO05D003812 6.2e-19 97.8 119 49.6
Medtr1g032350 Medicago truncatula HOM05D003241 ORTHO05D003812 6.2e-19 97.8 119 49.6
SMO361G0171 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 2.4e-18 95.9 124 47.6
unitig_749.g14191 Utricularia gibba HOM05D003241 ORTHO05D003812 3.1e-18 95.5 118 49.2
unitig_77.g31483 Utricularia gibba HOM05D003241 ORTHO05D003812 3.1e-18 95.5 118 49.2
Hund17599 Selenicereus undatus HOM05D003241 ORTHO05D003812 4.0e-18 95.1 82 62.2
Zm00001eb140630 Zea mays HOM05D003241 ORTHO05D003812 4.0e-18 95.1 96 58.3
ECA248G0244 Erigeron canadensis HOM05D003241 ORTHO05D003812 9.0e-18 94.0 92 58.7
AUR62018246 Chenopodium quinoa HOM05D003241 ORTHO05D003812 1.5e-17 93.2 94 55.3
AUR62034840 Chenopodium quinoa HOM05D003241 ORTHO05D003812 1.5e-17 93.2 94 55.3
RcHm_v2.0_Chr4g0416151 Rosa chinensis HOM05D003241 ORTHO05D003812 1.5e-17 93.2 148 43.2
vmacro19775 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 2.0e-17 92.8 92 55.4
EL10Ac6g15598 Beta vulgaris HOM05D003241 ORTHO05D003812 2.6e-17 92.4 97 61.9
FAN15G1779 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.6e-17 92.4 148 43.2
FAN27G2894 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.6e-17 92.4 148 43.2
MD13G1193700 Malus domestica HOM05D003241 ORTHO05D003812 2.6e-17 92.4 124 47.6
Nitab4.5_0002344g0060 Nicotiana tabacum HOM05D003241 ORTHO05D003812 3.4e-17 92.0 116 48.3
FAN20G2531 Fragaria x ananassa HOM05D003241 ORTHO05D003812 4.4e-17 91.7 149 43.0
Prupe.1G014100 Prunus persica HOM05D003241 ORTHO05D003812 5.8e-17 91.3 123 48.0
Os02g0511500 Oryza sativa ssp. japonica HOM05D003241 ORTHO05D003812 7.6e-17 90.9 116 50.9
FvH4_4g15641 Fragaria vesca HOM05D003241 ORTHO05D003812 9.9e-17 90.5 148 42.6
FAN12G3728 Fragaria x ananassa HOM05D003241 ORTHO05D003812 9.9e-17 90.5 148 42.6
vmacro19776 Vaccinium macrocarpon HOM05D003241 ORTHO05D003812 9.9e-17 90.5 92 54.3
RcHm_v2.0_Chr4g0416161 Rosa chinensis HOM05D003241 ORTHO05D003812 1.7e-16 89.7 148 42.6
QL09p049212 Quercus lobata HOM05D003241 ORTHO05D003812 2.2e-16 89.4 98 57.1
MD16G1194300 Malus domestica HOM05D003241 ORTHO05D003812 4.9e-16 88.2 125 45.6
Eucgr.L02270 Eucalyptus grandis HOM05D001083 ORTHO05D003812 6.4e-16 87.8 77 63.6
COL.COLO4_13873 Corchorus olitorius HOM05D003241 ORTHO05D003812 1.4e-15 86.7 99 53.5
FAN17G1371 Fragaria x ananassa HOM05D003241 ORTHO05D003812 2.4e-15 85.9 148 41.9
PGSC0003DMG400024746 Solanum tuberosum HOM05D003241 ORTHO05D003812 3.5e-14 82.0 115 44.3
Psat6g151960 Pisum sativum HOM05D003241 ORTHO05D003812 4.6e-14 81.6 74 63.5
Solyc01g099380.4 Solanum lycopersicum HOM05D003241 ORTHO05D003812 7.9e-14 80.9 104 46.2
AagrBONN_evm.TU.Sc2ySwM_117.3043 Anthoceros agrestis HOM05D003241 ORTHO05D003812 2.3e-13 79.3 123 44.7
Sopen01g042940 Solanum pennellii HOM05D003241 ORTHO05D003812 2.3e-13 79.3 78 53.8
Migut.N01793 Erythranthe guttata HOM05D003241 ORTHO05D003812 5.1e-13 78.2 116 43.1
PSO013G0353 Papaver somniferum HOM05D003241 ORTHO05D003812 5.1e-13 78.2 64 65.6
PSO063G3239 Papaver somniferum HOM05D003241 ORTHO05D003812 5.1e-13 78.2 64 65.6
PSO339G1389 Papaver somniferum HOM05D003241 ORTHO05D003812 5.1e-13 78.2 64 65.6
PSO339G6261 Papaver somniferum HOM05D003241 ORTHO05D003812 5.1e-13 78.2 64 65.6
Thecc.07G135300 Theobroma cacao HOM05D003241 ORTHO05D003812 6.6e-13 77.8 66 63.6
Lj2A813G14 Lonicera japonica HOM05D003241 ORTHO05D003812 1.9e-12 76.3 94 47.9
Peaxi162Scf00296g00721 Petunia axillaris HOM05D003241 ORTHO05D003812 1.9e-12 76.3 92 51.1
Actinidia21372 Actinidia chinensis HOM05D003241 ORTHO05D003812 4.3e-12 75.1 118 44.1
CDE03G0251 Ceratophyllum demersum HOM05D003241 ORTHO05D003812 2.8e-11 72.4 55 72.7
Lju445A0T13 Lonicera japonica HOM05D003241 ORTHO05D003812 2.8e-11 72.4 63 60.3
Nitab4.5_0014335g0020 Nicotiana tabacum HOM05D003241 ORTHO05D003812 3.6e-11 72.0 71 57.7
Rhsim06G0182100 Rhododendron simsii HOM05D003241 ORTHO05D003812 3.1e-10 68.9 46 73.9
Rhsim06G0183100 Rhododendron simsii HOM05D003241 ORTHO05D003812 3.1e-10 68.9 46 73.9
Peaxi162Scf00067g00244 Petunia axillaris HOM05D003241 ORTHO05D003812 9.0e-10 67.4 71 53.5
Actinidia16705 Actinidia chinensis HOM05D003241 ORTHO05D003812 1.2e-09 67.0 108 46.3
PRCOL_00003741 Prasinoderma coloniale HOM05D003241 ORTHO05D003812 7.6e-09 64.3 44 65.9
MCO08G320 Micromonas commoda HOM05D003241 ORTHO05D003812 2.2e-08 62.8 96 39.6
Atru.chr1.2009 Acer truncatum HOM05D003241 ORTHO05D003812 2.9e-08 62.4 99 41.4
AL3G27010 Arabidopsis lyrata HOM05D003241 ORTHO05D003812 2.9e-08 62.4 69 49.3
MD07G1289000 Malus domestica HOM05D003241 ORTHO05D003812 4.9e-08 61.6 59 55.9
Aa31LG8G1930 Aethionema arabicum HOM05D003241 ORTHO05D000015 6.4e-08 61.2 44 70.5
BraA05t22289Z Brassica rapa HOM05D003241 ORTHO05D003812 8.4e-08 60.8 50 62.0
Hma1.2p1_0148F.1_g066050 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 8.4e-08 60.8 38 71.1
SMO351G0236 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 8.4e-08 60.8 104 38.5
A05p34740 Brassica napus HOM05D003241 ORTHO05D003812 1.1e-07 60.5 50 62.0
SMO111G0075 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 1.4e-07 60.1 84 42.9
AT3G14700 Arabidopsis thaliana HOM05D003241 ORTHO05D003812 3.2e-07 58.9 50 58.0
BcaC05g29043 Brassica carinata HOM05D003241 ORTHO05D003812 5.5e-07 58.2 50 58.0
C05p52560 Brassica napus HOM05D003241 ORTHO05D003812 5.5e-07 58.2 50 58.0
VMungo1127G1632 Vigna mungo HOM05D003241 ORTHO05D003812 7.1e-07 57.8 41 73.2
SMO111G0085 Selaginella moellendorffii HOM05D003241 ORTHO05D003812 1.2e-06 57.0 79 43.0
RcHm_v2.0_Chr7g0234901 Rosa chinensis HOM05D003241 ORTHO05D003812 2.1e-06 56.2 53 52.8
AagrBONN_evm.TU.Sc2ySwM_117.3514 Anthoceros agrestis HOM05D003241 ORTHO05D003812 2.7e-06 55.8 92 38.0
Actinidia17691 Actinidia chinensis HOM05D003241 ORTHO05D003812 4.6e-06 55.1 58 51.7


User provided reference genes

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