Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_08561 Corylus avellana HOM05D000880 ORTHO05D008158 5.1e-93 344.4 168 100.0
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 6.7e-37 157.9 111 73.0
FvH4_2g30661 Fragaria vesca HOM05D000880 ORTHO05D008158 6.3e-27 124.8 142 49.3
FAN24G1353 Fragaria x ananassa HOM05D000880 ORTHO05D008158 6.3e-27 124.8 142 49.3
Manes.16G136800 Manihot esculenta HOM05D000880 ORTHO05D008158 1.4e-26 123.6 152 48.0
Dinv26557 Davidia involucrata HOM05D000880 ORTHO05D008158 9.1e-26 120.9 140 50.0
RcHm_v2.0_Chr6g0312231 Rosa chinensis HOM05D000880 ORTHO05D008158 2.0e-25 119.8 140 47.9
Prupe.1G462400 Prunus persica HOM05D000880 ORTHO05D008158 3.5e-25 119.0 145 46.9
Nn8g40848 Nelumbo nucifera HOM05D000880 ORTHO05D008158 4.5e-25 118.6 138 49.3
Hund06650 Selenicereus undatus HOM05D000880 ORTHO05D008158 7.7e-25 117.9 146 48.6
VMungo1309G2560 Vigna mungo HOM05D000880 ORTHO05D008158 2.9e-24 115.9 150 44.0
TWI34G0460 Tripterygium wilfordii HOM05D000880 ORTHO05D008158 8.5e-24 114.4 153 46.4
Glyma.04G074500 Glycine max HOM05D000880 ORTHO05D008158 1.9e-23 113.2 145 45.5
GSVIVG01035548001 Vitis vinifera HOM05D000880 ORTHO05D008158 3.2e-23 112.5 145 45.5
Potri.006G277500 Populus trichocarpa HOM05D000880 ORTHO05D008158 1.2e-22 110.5 147 46.3
QL12p024664 Quercus lobata HOM05D000880 ORTHO05D008158 1.2e-22 110.5 114 51.8
Ah.10g033780 Amaranthus hybridus HOM05D000880 ORTHO05D008158 1.6e-22 110.2 138 46.4
Thecc.09G004900 Theobroma cacao HOM05D000880 ORTHO05D008158 1.6e-22 110.2 109 53.2
MD15G1110200 Malus domestica HOM05D000880 ORTHO05D008158 4.7e-22 108.6 125 48.8
TAR626G0578 Trochodendron aralioides HOM05D000880 ORTHO05D008158 4.7e-22 108.6 92 56.5
MSTRG.25767 Avicennia marina HOM05D000880 ORTHO05D008158 6.1e-22 108.2 95 54.7
Gohir.D06G109200 Gossypium hirsutum HOM05D000880 ORTHO05D008158 6.1e-22 108.2 136 43.4
Gorai.010G124000 Gossypium raimondii HOM05D000880 ORTHO05D008158 6.1e-22 108.2 136 43.4
Solyc08g074270.4 Solanum lycopersicum HOM05D000880 ORTHO05D008158 6.1e-22 108.2 99 52.5
TPR.G12367 Trifolium pratense HOM05D000880 ORTHO05D008158 6.1e-22 108.2 105 49.5
Medtr3g108700 Medicago truncatula HOM05D000880 ORTHO05D008158 8.0e-22 107.8 150 42.0
Sopen08g022920 Solanum pennellii HOM05D000880 ORTHO05D008158 8.0e-22 107.8 99 52.5
Gohir.A06G107000 Gossypium hirsutum HOM05D000880 ORTHO05D008158 1.0e-21 107.5 136 43.4
Duzib168G1559 Durio zibethinus HOM05D000880 ORTHO05D008158 1.4e-21 107.1 146 42.5
Oeu014113.1 Olea europaea HOM05D000880 ORTHO05D008158 1.4e-21 107.1 128 49.2
COL.COLO4_18613 Corchorus olitorius HOM05D000880 ORTHO05D008158 1.8e-21 106.7 137 42.3
Migut.A00456 Erythranthe guttata HOM05D000880 ORTHO05D008158 4.0e-21 105.5 100 52.0
PGSC0003DMG400029591 Solanum tuberosum HOM05D000880 ORTHO05D008158 5.2e-21 105.1 99 51.5
Phvul.009G100200 Phaseolus vulgaris HOM05D000880 ORTHO05D008158 6.8e-21 104.8 108 50.0
Nitab4.5_0000919g0070 Nicotiana tabacum HOM05D000880 ORTHO05D008158 8.8e-21 104.4 132 44.7
Nitab4.5_0000970g0030 Nicotiana tabacum HOM05D000880 ORTHO05D008158 1.2e-20 104.0 118 47.5
Aqoxy7G02771 Aquilegia oxysepala HOM05D000880 ORTHO05D008158 1.5e-20 103.6 116 47.4
SGA_v2.0_scaffold27G11654 Striga asiatica HOM05D000880 ORTHO05D008158 1.5e-20 103.6 114 47.4
EL10Ac2g03714 Beta vulgaris HOM05D000880 ORTHO05D008158 2.0e-20 103.2 147 42.2
Ca_15679_v3 Cicer arietinum L. HOM05D000880 ORTHO05D008158 2.0e-20 103.2 98 51.0
CAN.G195.2 Capsicum annuum HOM05D000880 ORTHO05D008158 3.4e-20 102.4 98 49.0
Lj1g0027131 Lotus japonicus HOM05D000880 ORTHO05D008158 3.4e-20 102.4 140 43.6
CsaV3_3G046930 Cucumis sativus L. HOM05D000880 ORTHO05D008158 4.4e-20 102.1 121 48.8
arahy.Tifrunner.gnm1.ann1.95FWWQ Arachis hypogaea HOM05D000880 ORTHO05D008158 5.7e-20 101.7 132 44.7
Sed0006739 Sechium edule HOM05D000880 ORTHO05D008158 5.7e-20 101.7 98 52.0
Psat5g025080 Pisum sativum HOM05D000880 ORTHO05D008158 9.8e-20 100.9 98 50.0
Sc09g0007880 Simmondsia chinensis HOM05D000880 ORTHO05D008158 9.8e-20 100.9 139 41.7
ClCG05G017430 Citrullus lanatus HOM05D000880 ORTHO05D008158 1.3e-19 100.5 91 53.8
Lj8C437G0 Lonicera japonica HOM05D000880 ORTHO05D008158 1.3e-19 100.5 101 48.5
CiPaw.07G214700 Carya illinoinensis HOM05D000880 ORTHO05D008158 1.7e-19 100.1 51 84.3
arahy.Tifrunner.gnm1.ann1.C9KM7P Arachis hypogaea HOM05D000880 ORTHO05D008158 2.8e-19 99.4 96 51.0
CSS0016378 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D008158 2.8e-19 99.4 112 50.0
CSS0036637 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D008158 2.8e-19 99.4 112 50.0
AUR62038750 Chenopodium quinoa HOM05D000880 ORTHO05D008158 2.8e-19 99.4 117 46.2
PSO421G0529 Papaver somniferum HOM05D000880 ORTHO05D008158 2.8e-19 99.4 100 49.0
AUR62020632 Chenopodium quinoa HOM05D000880 ORTHO05D008158 3.7e-19 99.0 140 43.6
Sabra06G0215200 Salix brachista HOM05D000880 ORTHO05D008158 6.3e-19 98.2 141 45.4
SalBow4G1400 Salvia bowleyana HOM05D000880 ORTHO05D008158 6.3e-19 98.2 129 43.4
Cpa.g.sc244.8 Carica papaya HOM05D000880 ORTHO05D008158 8.3e-19 97.8 99 46.5
PGR044G0601 Punica granatum HOM05D000880 ORTHO05D008158 8.3e-19 97.8 148 40.5
THA.LOC104803319 Tarenaya hassleriana HOM05D000880 ORTHO05D008158 8.3e-19 97.8 127 43.3
A09p06390 Brassica napus HOM05D000880 ORTHO05D008158 2.4e-18 96.3 124 41.9
BcaB04g19802 Brassica carinata HOM05D000880 ORTHO05D008158 3.1e-18 95.9 123 41.5
A06p35620 Brassica napus HOM05D000880 ORTHO05D008158 3.1e-18 95.9 130 41.5
BraA06t26486Z Brassica rapa HOM05D000880 ORTHO05D008158 3.1e-18 95.9 130 41.5
SEGI_11643 Sequoiadendron giganteum HOM05D000880 ORTHO05D008158 4.1e-18 95.5 51 78.4
BolC7t44822H Brassica oleracea HOM05D005859 ORTHO05D008158 5.4e-18 95.1 133 41.4
BraA09t36284Z Brassica rapa HOM05D000880 ORTHO05D008158 5.4e-18 95.1 121 41.3
Sp2g22600 Schrenkiella parvula HOM05D000880 ORTHO05D008158 7.0e-18 94.7 127 40.2
BcaC04g23563 Brassica carinata HOM05D000880 ORTHO05D008158 9.2e-18 94.4 99 47.5
C07p42930 Brassica napus HOM05D005859 ORTHO05D008158 9.2e-18 94.4 128 43.8
C09p07080 Brassica napus HOM05D000880 ORTHO05D008158 9.2e-18 94.4 122 41.0
Thhalv10003995m.g Eutrema salsugineum HOM05D000880 ORTHO05D008158 9.2e-18 94.4 92 46.7
Atru.chr7.2669 Acer truncatum HOM05D000880 ORTHO05D008158 2.7e-17 92.8 134 41.0
Carub.0006s2270 Capsella rubella HOM05D000880 ORTHO05D008158 2.7e-17 92.8 95 47.4
PSO423G0300 Papaver somniferum HOM05D000880 ORTHO05D008158 3.5e-17 92.4 119 44.5
CARHR188600 Cardamine hirsuta HOM05D000880 ORTHO05D008158 7.7e-17 91.3 94 46.8
AT5G24850 Arabidopsis thaliana HOM05D000880 ORTHO05D008158 1.0e-16 90.9 130 40.0
Zm00001eb389640 Zea mays HOM05D000880 ORTHO05D008158 1.0e-16 90.9 139 38.8
ATR0626G237 Amborella trichopoda HOM05D000880 ORTHO05D008158 2.9e-16 89.4 51 72.5
BolC9t53624H Brassica oleracea HOM05D000880 ORTHO05D008158 2.9e-16 89.4 99 46.5
Lalb_Chr23g0268891 Lupinus albus HOM05D000880 ORTHO05D008158 3.8e-16 89.0 95 45.3
HPP92_021891 Vanilla planifolia HOM05D000880 ORTHO05D008158 3.8e-16 89.0 114 43.0
AL6G36510 Arabidopsis lyrata HOM05D000880 ORTHO05D008158 6.6e-16 88.2 129 40.3
Aa31LG11G4060 Aethionema arabicum HOM05D000880 ORTHO05D008158 8.6e-16 87.8 91 45.1
Cc00_g04780 Coffea canephora HOM05D000880 ORTHO05D008158 8.6e-16 87.8 95 47.4
Rhsim07G0170300 Rhododendron simsii HOM05D000880 ORTHO05D008158 1.1e-15 87.4 52 75.0
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 1.5e-15 87.0 106 42.5
Eucgr.C03997 Eucalyptus grandis HOM05D000880 ORTHO05D008158 1.5e-15 87.0 51 70.6
unitig_748.g8176 Utricularia gibba HOM05D002718 ORTHO05D003269 1.5e-15 87.0 106 43.4
SMO172G0045 Selaginella moellendorffii HOM05D000880 ORTHO05D008158 4.3e-15 85.5 51 70.6
AagrBONN_evm.TU.Sc2ySwM_368.3176 Anthoceros agrestis HOM05D000880 ORTHO05D008158 3.6e-14 82.4 117 45.3
CDE02G2617 Ceratophyllum demersum HOM05D000880 ORTHO05D008158 3.6e-14 82.4 119 37.8
vmacro05105 Vaccinium macrocarpon HOM05D000880 ORTHO05D008158 4.7e-14 82.0 47 78.7
Os06g0661800 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D008158 3.0e-13 79.3 52 65.4
Pp3c21_7810 Physcomitrium patens HOM05D000880 ORTHO05D008158 4.0e-13 79.0 51 64.7
Actinidia03580 Actinidia chinensis HOM05D000880 ORTHO05D008158 8.9e-13 77.8 52 65.4
Mapoly0002s0311 Marchantia polymorpha HOM05D000880 ORTHO05D008158 5.7e-12 75.1 51 62.7
CBR_g905 Chara braunii HOM05D000880 ORTHO05D008158 7.5e-12 74.7 51 64.7
FAN20G0534 Fragaria x ananassa HOM05D000880 ORTHO05D008158 1.1e-10 70.9 110 42.7
CSS0044226 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D006637 2.3e-08 63.2 117 40.2
Dinv19685 Davidia involucrata HOM05D000880 ORTHO05D006637 3.9e-08 62.4 117 40.2
Haze_21695 Corylus avellana HOM05D000880 ORTHO05D008158 8.6e-08 61.2 31 80.6
EL10Ac7g17512 Beta vulgaris HOM05D000880 ORTHO05D006637 1.5e-07 60.5 120 40.0
Lsat_1_v5_gn_5_191301 Lactuca sativa HOM05D000880 ORTHO05D006637 3.3e-07 59.3 118 40.7
Dinv33056 Davidia involucrata HOM05D000880 ORTHO05D006637 5.6e-07 58.5 111 40.5
Lsat_1_v5_gn_9_5701 Lactuca sativa HOM05D000880 ORTHO05D006637 5.6e-07 58.5 118 41.5
Lj1A24T62 Lonicera japonica HOM05D000880 ORTHO05D006637 9.5e-07 57.8 120 38.3
Nitab4.5_0001879g0150 Nicotiana tabacum HOM05D000880 ORTHO05D006637 9.5e-07 57.8 121 42.1
Nitab4.5_0002433g0070 Nicotiana tabacum HOM05D000880 ORTHO05D006637 9.5e-07 57.8 121 42.1
Oeu046675.1 Olea europaea HOM05D000880 ORTHO05D006637 1.2e-06 57.4 118 38.1
Prupe.8G262000 Prunus persica HOM05D000880 ORTHO05D006637 1.2e-06 57.4 121 38.8
MBI18_g06032_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D006637 1.6e-06 57.0 118 37.3
TAR365G0436 Trochodendron aralioides HOM05D000880 ORTHO05D006637 1.6e-06 57.0 116 37.9
CSS0020775 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D006637 2.1e-06 56.6 117 38.5
SalBow3G1763 Salvia bowleyana HOM05D000880 ORTHO05D006637 2.1e-06 56.6 120 37.5
Actinidia01488 Actinidia chinensis HOM05D000880 ORTHO05D006637 2.8e-06 56.2 123 39.8
MD03G1288700 Malus domestica HOM05D000880 ORTHO05D006637 2.8e-06 56.2 113 40.7
Haze_04943 Corylus avellana HOM05D000880 ORTHO05D006637 3.6e-06 55.8 123 38.2
Peaxi162Scf00001g04232 Petunia axillaris HOM05D000880 ORTHO05D006637 3.6e-06 55.8 118 39.8
Atru.chr5.1141 Acer truncatum HOM05D000880 ORTHO05D006637 4.7e-06 55.5 117 40.2
CANSAT25G3636 Cannabis sativa HOM05D000880 ORTHO05D006637 4.7e-06 55.5 119 38.7
CAN.G472.9 Capsicum annuum HOM05D000880 ORTHO05D006637 4.7e-06 55.5 120 41.7
Hma1.2p1_1471F.1_g285630 Hydrangea macrophylla HOM05D000880 ORTHO05D006637 4.7e-06 55.5 124 37.9
Peaxi162Scf00213g01024 Petunia axillaris HOM05D000880 ORTHO05D008158 4.7e-06 55.5 74 40.5
Carub.0004s3032 Capsella rubella HOM05D000880 ORTHO05D006637 6.2e-06 55.1 119 38.7
Hma1.2p1_0494F.1_g165210 Hydrangea macrophylla HOM05D000880 ORTHO05D006637 6.2e-06 55.1 121 38.0
Ah.08g213410 Amaranthus hybridus HOM05D000880 ORTHO05D006637 8.0e-06 54.7 121 36.4
MSTRG.21636 Avicennia marina HOM05D000880 ORTHO05D006637 8.0e-06 54.7 121 36.4
FvH4_2g25790 Fragaria vesca HOM05D000880 ORTHO05D006637 8.0e-06 54.7 117 39.3
FAN15G0942 Fragaria x ananassa HOM05D000880 ORTHO05D006637 8.0e-06 54.7 119 38.7
FAN24G2572 Fragaria x ananassa HOM05D000880 ORTHO05D006637 8.0e-06 54.7 117 39.3
Gohir.A11G114200 Gossypium hirsutum HOM05D000880 ORTHO05D006637 8.0e-06 54.7 121 38.8
Sabra02G0155200 Salix brachista HOM05D000880 ORTHO05D006637 8.0e-06 54.7 120 39.2
Hund18174 Selenicereus undatus HOM05D000880 ORTHO05D006637 8.0e-06 54.7 114 41.2
Sc05g0003800 Simmondsia chinensis HOM05D000880 ORTHO05D006637 8.0e-06 54.7 121 39.7
Solyc09g075180.3 Solanum lycopersicum HOM05D000880 ORTHO05D006637 8.0e-06 54.7 119 40.3
Sopen09g030000 Solanum pennellii HOM05D000880 ORTHO05D006637 8.0e-06 54.7 119 40.3
PGSC0003DMG400031812 Solanum tuberosum HOM05D000880 ORTHO05D006637 8.0e-06 54.7 119 40.3
Thecc.01G301200 Theobroma cacao HOM05D000880 ORTHO05D006637 8.0e-06 54.7 120 40.0
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 8.0e-06 54.7 120 37.5


User provided reference genes

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