Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 0.0e+00 1164.8 572 100.0
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 0.0e+00 1111.3 565 96.1
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 0.0e+00 1109.7 564 96.3
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 0.0e+00 1109.4 565 96.3
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 0.0e+00 1107.4 564 96.3
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1105.1 561 95.7
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 0.0e+00 1104.7 564 95.7
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 0.0e+00 1104.4 561 95.5
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 0.0e+00 1102.0 564 95.4
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 0.0e+00 1101.7 561 95.4
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1101.3 566 94.9
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1101.3 566 94.9
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1099.7 564 95.0
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 0.0e+00 1099.7 566 94.7
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1099.7 566 94.7
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1099.0 566 94.5
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1099.0 561 95.4
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1099.0 564 95.0
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1097.8 564 94.9
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1097.0 564 94.1
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 0.0e+00 1097.0 566 94.7
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 0.0e+00 1096.3 564 94.9
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 0.0e+00 1096.3 559 95.0
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 0.0e+00 1095.5 564 94.1
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 0.0e+00 1094.7 561 94.8
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 0.0e+00 1094.7 558 95.3
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 0.0e+00 1094.0 564 94.5
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1093.2 564 94.5
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 0.0e+00 1092.8 564 94.5
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 0.0e+00 1092.4 564 94.5
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 0.0e+00 1092.0 558 95.0
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 0.0e+00 1090.9 564 94.3
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1090.9 564 94.0
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 0.0e+00 1090.1 564 94.1
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1088.9 564 94.1
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 0.0e+00 1088.9 561 94.7
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1088.9 564 94.3
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1087.4 558 94.6
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 0.0e+00 1087.0 561 94.1
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 0.0e+00 1086.2 564 93.6
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 0.0e+00 1086.2 561 93.9
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 564 93.6
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 0.0e+00 1083.9 564 93.6
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 0.0e+00 1083.9 564 93.4
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1081.6 564 93.1
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 564 94.3
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 561 93.8
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 0.0e+00 1079.7 596 89.6
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 564 92.7
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 0.0e+00 1078.2 564 92.0
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 0.0e+00 1078.2 564 92.9
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 0.0e+00 1076.6 564 93.1
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 579 91.2
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 564 92.2
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 564 92.9
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1076.2 563 92.9
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 564 91.7
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 564 91.8
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 564 91.8
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 564 92.2
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 600 89.2
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 564 91.8
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 565 91.9
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 0.0e+00 1075.5 564 93.1
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 0.0e+00 1075.1 565 92.0
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 3.9e-312 1074.7 564 92.6
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 3.9e-312 1073.9 553 94.2
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 7.8e-312 1073.2 564 91.5
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 1.6e-311 1072.0 561 92.5
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.5e-311 1070.8 564 92.2
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 4.7e-311 1070.5 564 92.0
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 4.7e-311 1070.5 564 91.3
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 4.7e-311 1070.5 564 91.3
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 4.7e-311 1070.5 619 86.4
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 1.0e-310 1069.3 565 92.4
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 2.1e-308 1061.6 561 91.4
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 2.8e-308 1061.2 553 91.3
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.8e-307 1058.5 565 91.2
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 1.2e-306 1055.8 553 92.0
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 3.4e-306 1054.3 569 89.6
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 1.3e-305 1052.4 552 91.8
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 6.4e-305 1050.0 570 89.3
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 7.1e-304 1046.6 561 89.7
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 2.1e-303 1045.0 564 90.8
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 1.9e-301 1038.5 594 86.9
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 5.6e-301 1036.9 555 90.8
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 3.6e-300 1034.2 521 95.6
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 3.6e-300 1034.2 551 89.1
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.5e-298 1028.9 575 88.3
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 2.4e-296 1021.5 553 88.8
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.2e-295 1019.2 564 89.2
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.2e-292 1009.2 559 86.2
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.2e-292 1009.2 559 86.2
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 1.5e-290 1002.3 542 87.6
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 3.3e-285 984.6 521 91.2
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 1.6e-276 955.7 487 93.4
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 4.0e-275 951.0 489 93.9
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 1.6e-268 929.1 564 82.3
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 3.2e-264 914.8 454 96.0
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 1.2e-263 912.9 540 80.6
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 4.7e-247 857.8 543 76.6
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.5e-240 835.5 564 75.7
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 7.0e-235 817.4 566 74.9
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 7.7e-234 813.9 406 95.8
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.1e-232 810.1 528 79.0
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.2e-231 806.6 416 94.5
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 4.4e-229 798.1 521 78.5
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.1e-227 793.5 521 78.1
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.1e-224 783.5 564 72.2
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 8.0e-223 777.3 564 71.6
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.3e-220 770.0 508 74.4
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.7e-220 769.6 560 72.5
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.5e-213 746.5 391 93.1
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 3.5e-210 735.3 558 67.6
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 5.2e-198 694.9 506 71.9
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 2.0e-189 666.4 329 96.0
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 5.1e-169 598.6 312 90.7
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 6.9e-158 561.6 502 61.2
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.4e-150 536.6 556 55.8
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.6e-146 523.9 262 95.0
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 1.0e-140 504.6 565 53.8
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.4e-139 498.0 462 58.4
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 8.2e-135 485.0 302 81.8
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.7e-132 477.2 259 91.5
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 5.5e-131 472.2 508 53.7
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 3.0e-129 466.5 385 65.5
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 2.6e-128 463.4 293 79.9
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.5e-125 454.1 561 49.6
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.1e-122 443.7 373 61.4
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.7e-119 433.0 238 91.6
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 2.3e-113 413.7 350 62.3
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.3e-108 397.9 196 95.4
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 5.5e-99 365.9 246 76.4
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 1.0e-97 361.7 305 66.2
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.5e-96 357.8 267 68.9
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.7e-95 353.2 214 79.4
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.5e-91 340.5 167 96.4
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 4.3e-91 339.7 326 60.7
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.8e-90 337.0 183 85.8
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.7e-84 317.8 160 92.5
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 1.1e-83 315.1 154 94.8
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 2.8e-82 310.5 156 94.2
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 5.2e-73 279.6 178 82.6
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 9.2e-70 268.9 159 82.4
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.8e-65 254.6 149 84.6
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-54 216.5 123 88.6
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 2.8e-50 204.1 126 79.4
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 1.2e-48 198.7 105 89.5
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 1.9e-46 191.4 113 85.8
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.3e-44 185.3 134 69.4
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 1.9e-43 181.4 281 42.3
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 4.1e-33 147.1 96 78.1
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 1.2e-32 145.6 144 59.0
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 3.0e-28 131.0 75 86.7
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 1.9e-27 128.3 73 89.0
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 1.8e-25 121.7 86 74.4
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 2.5e-22 111.3 55 98.2
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-19 101.7 58 86.2
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 5.3e-17 93.6 52 84.6
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 9.1e-17 92.8 63 73.0
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 2.0e-16 91.7 49 89.8
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 7.7e-16 89.7 60 81.7
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.3e-15 89.0 47 87.2
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 2.9e-15 87.8 44 86.4
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 8.5e-15 86.3 51 86.3
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 4.2e-14 84.0 88 59.1
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 4.2e-14 84.0 59 69.5
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 1.7e-10 72.0 51 76.5


User provided reference genes

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