Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_03191 Corylus avellana HOM05D001978 ORTHO05D003036 9.2e-50 199.9 100 100.0
Glyma.09G226400 Glycine max HOM05D001978 ORTHO05D003036 1.9e-10 69.3 51 72.5
QL04p010499 Quercus lobata HOM05D001978 ORTHO05D003036 2.5e-10 68.9 51 72.5
Glyma.12G010300 Glycine max HOM05D001978 ORTHO05D003036 5.5e-10 67.8 47 76.6
Phvul.011G010400 Phaseolus vulgaris HOM05D001978 ORTHO05D003036 5.5e-10 67.8 47 76.6
Potri.009G055400 Populus trichocarpa HOM05D001978 ORTHO05D003036 5.5e-10 67.8 51 70.6
Sabra09G0040500 Salix brachista HOM05D001978 ORTHO05D003036 5.5e-10 67.8 51 70.6
VMungo1127G0961 Vigna mungo HOM05D001978 ORTHO05D003036 5.5e-10 67.8 47 76.6
Cpa.g.sc125.59 Carica papaya HOM05D001978 ORTHO05D003036 7.1e-10 67.4 47 76.6
CiPaw.14G004000 Carya illinoinensis HOM05D001978 ORTHO05D003036 7.1e-10 67.4 47 76.6
Manes.07G011900 Manihot esculenta HOM05D001978 ORTHO05D003036 7.1e-10 67.4 47 76.6
Prupe.2G024600 Prunus persica HOM05D001978 ORTHO05D003036 7.1e-10 67.4 47 76.6
RcHm_v2.0_Chr1g0318481 Rosa chinensis HOM05D001978 ORTHO05D003036 7.1e-10 67.4 47 76.6
Thecc.01G404200 Theobroma cacao HOM05D001978 ORTHO05D003036 7.1e-10 67.4 47 76.6
TWI53G0392 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 7.1e-10 67.4 47 76.6
Duzib138G1653 Durio zibethinus HOM05D001978 ORTHO05D003036 9.3e-10 67.0 47 76.6
Gohir.A11G073600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 9.3e-10 67.0 50 70.0
Manes.10G135100 Manihot esculenta HOM05D001978 ORTHO05D003036 9.3e-10 67.0 47 76.6
QL04p000034 Quercus lobata HOM05D001978 ORTHO05D003036 9.3e-10 67.0 77 53.2
CAN.G909.18 Capsicum annuum HOM05D001978 ORTHO05D003036 1.2e-09 66.6 47 74.5
Nitab4.5_0006695g0020 Nicotiana tabacum HOM05D001978 ORTHO05D003036 1.2e-09 66.6 47 74.5
Peaxi162Scf01108g00213 Petunia axillaris HOM05D001978 ORTHO05D003036 1.2e-09 66.6 47 74.5
Solyc01g088020.3 Solanum lycopersicum HOM05D001978 ORTHO05D003036 1.2e-09 66.6 47 74.5
Sopen01g034910 Solanum pennellii HOM05D001978 ORTHO05D003036 1.2e-09 66.6 47 74.5
COL.COLO4_12328 Corchorus olitorius HOM05D001978 ORTHO05D003036 1.6e-09 66.2 47 74.5
Dinv07425 Davidia involucrata HOM05D001978 ORTHO05D003036 1.6e-09 66.2 47 74.5
ECA234G3788 Erigeron canadensis HOM05D001978 ORTHO05D003036 1.6e-09 66.2 78 51.3
Gohir.A08G055600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.6e-09 66.2 51 70.6
Gohir.A08G141300 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.6e-09 66.2 47 74.5
Gohir.D08G064900 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.6e-09 66.2 51 70.6
Gohir.D08G162400 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.6e-09 66.2 47 74.5
Gohir.D11G078201 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.6e-09 66.2 46 76.1
Gorai.004G067200 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.6e-09 66.2 51 70.6
Gorai.007G083600 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.6e-09 66.2 46 76.1
MD02G1300000 Malus domestica HOM05D001978 ORTHO05D003036 1.6e-09 66.2 47 74.5
Nitab4.5_0002888g0010 Nicotiana tabacum HOM05D001978 ORTHO05D003036 1.6e-09 66.2 47 74.5
Oeu006547.2 Olea europaea HOM05D001978 ORTHO05D003036 1.6e-09 66.2 77 54.5
QL06p019642 Quercus lobata HOM05D001978 ORTHO05D003036 1.6e-09 66.2 47 74.5
arahy.Tifrunner.gnm1.ann1.18AW2L Arachis hypogaea HOM05D001978 ORTHO05D003036 2.1e-09 65.9 50 68.0
arahy.Tifrunner.gnm1.ann1.T8W0FC Arachis hypogaea HOM05D001978 ORTHO05D003036 2.1e-09 65.9 50 68.0
Duzib133G0356 Durio zibethinus HOM05D001978 ORTHO05D003036 2.1e-09 65.9 47 74.5
Lj9A642G52 Lonicera japonica HOM05D001978 ORTHO05D003036 2.1e-09 65.9 47 74.5
Oeu014599.1 Olea europaea HOM05D001978 ORTHO05D003036 2.1e-09 65.9 47 72.3
Potri.001G260900 Populus trichocarpa HOM05D001978 ORTHO05D003036 2.1e-09 65.9 51 66.7
Gohir.D12G103000 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.7e-09 65.5 51 68.6
Gorai.008G112200 Gossypium raimondii HOM05D001978 ORTHO05D003036 2.7e-09 65.5 51 68.6
HanXRQChr16g0524831 Helianthus annuus HOM05D001978 ORTHO05D003036 2.7e-09 65.5 47 72.3
Lsat_1_v5_gn_4_32040 Lactuca sativa HOM05D001978 ORTHO05D003036 2.7e-09 65.5 47 72.3
PGR031G1837 Punica granatum HOM05D001978 ORTHO05D003036 2.7e-09 65.5 50 68.0
TWI09G1049 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 2.7e-09 65.5 47 74.5
FAN03G2968 Fragaria x ananassa HOM05D001978 ORTHO05D003036 3.5e-09 65.1 47 72.3
Gohir.A12G100200 Gossypium hirsutum HOM05D001978 ORTHO05D003036 3.5e-09 65.1 51 68.6
MD07G1024900 Malus domestica HOM05D001978 ORTHO05D003036 3.5e-09 65.1 47 72.3
Rhsim01G0124800 Rhododendron simsii HOM05D001978 ORTHO05D003036 3.5e-09 65.1 50 66.0
Haze_03128 Corylus avellana HOM05D001978 ORTHO05D003036 4.6e-09 64.7 46 73.9
Haze_03129 Corylus avellana HOM05D001978 ORTHO05D003036 4.6e-09 64.7 46 73.9
Lj3g0007867 Lotus japonicus HOM05D001978 ORTHO05D003036 4.6e-09 64.7 46 73.9
Lalb_Chr01g0000521 Lupinus albus HOM05D001978 ORTHO05D003036 4.6e-09 64.7 51 70.6
Lalb_Chr03g0024131 Lupinus albus HOM05D001978 ORTHO05D003036 4.6e-09 64.7 51 70.6
Medtr4g045577 Medicago truncatula HOM05D001978 ORTHO05D003036 4.6e-09 64.7 47 74.5
Psat6g024720 Pisum sativum HOM05D001978 ORTHO05D003036 4.6e-09 64.7 47 74.5
Psat7g158440 Pisum sativum HOM05D001978 ORTHO05D003036 4.6e-09 64.7 47 74.5
TPR.G8350 Trifolium pratense HOM05D001978 ORTHO05D003036 4.6e-09 64.7 47 74.5
TWI73G0465 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 4.6e-09 64.7 47 74.5
TAR633G0096 Trochodendron aralioides HOM05D001978 ORTHO05D003036 4.6e-09 64.7 51 70.6
Atru.chr11.2543 Acer truncatum HOM05D001978 ORTHO05D003036 6.0e-09 64.3 46 71.7
CSS0034960 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 6.0e-09 64.3 50 68.0
Ciclev10030570m.g Citrus clementina HOM05D001978 ORTHO05D003036 6.0e-09 64.3 46 71.7
Sabra16G0159500 Salix brachista HOM05D001978 ORTHO05D003036 6.0e-09 64.3 51 64.7
TPR.G4596 Trifolium pratense HOM05D001978 ORTHO05D003036 6.0e-09 64.3 75 54.7
CSS0022031 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 7.9e-09 63.9 50 66.0
Cfa022633 Carpinus fangiana HOM05D001978 ORTHO05D003036 7.9e-09 63.9 91 48.4
Duzib268G1826 Durio zibethinus HOM05D001978 ORTHO05D003036 7.9e-09 63.9 51 68.6
Eucgr.G03281 Eucalyptus grandis HOM05D001978 ORTHO05D003036 7.9e-09 63.9 50 64.0
Lj7C575G6 Lonicera japonica HOM05D001978 ORTHO05D003036 7.9e-09 63.9 87 46.0
COL.COLO4_03678 Corchorus olitorius HOM05D001978 ORTHO05D003036 1.0e-08 63.5 47 72.3
Hma1.2p1_0685F.1_g203310 Hydrangea macrophylla HOM05D001978 ORTHO05D003036 1.0e-08 63.5 47 70.2
MSTRG.20555 Avicennia marina HOM05D001978 ORTHO05D003036 1.3e-08 63.2 47 72.3
Ca_26319_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 1.3e-08 63.2 47 72.3
Ca_29948_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 1.3e-08 63.2 47 72.3
FvH4_7g01850 Fragaria vesca HOM05D001978 ORTHO05D003036 1.3e-08 63.2 47 70.2
FAN06G2210 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.3e-08 63.2 47 70.2
Lalb_Chr19g0140221 Lupinus albus HOM05D001978 ORTHO05D003036 1.3e-08 63.2 51 68.6
Actinidia21535 Actinidia chinensis HOM05D001978 ORTHO05D003036 1.8e-08 62.8 50 68.0
CANSAT80G0138 Cannabis sativa HOM05D001978 ORTHO05D003036 1.8e-08 62.8 47 70.2
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 1.8e-08 62.8 77 53.2
MSTRG.17003 Avicennia marina HOM05D001978 ORTHO05D003036 3.0e-08 62.0 50 66.0
ECA236G3334 Erigeron canadensis HOM05D001978 ORTHO05D003036 3.0e-08 62.0 46 71.7
Psat7g013920 Pisum sativum HOM05D001978 ORTHO05D003036 3.0e-08 62.0 47 72.3
vmacro21140 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 3.0e-08 62.0 50 66.0
Migut.B01256 Erythranthe guttata HOM05D001978 ORTHO05D003036 3.9e-08 61.6 46 71.7
Gorai.004G168700 Gossypium raimondii HOM05D001978 ORTHO05D003036 3.9e-08 61.6 77 51.9
Actinidia06286 Actinidia chinensis HOM05D001978 ORTHO05D003036 5.1e-08 61.2 50 64.0
FAN01G0983 Fragaria x ananassa HOM05D001978 ORTHO05D003036 5.1e-08 61.2 48 72.9
SGA_v2.0_scaffold4G02473 Striga asiatica HOM05D001978 ORTHO05D003036 5.1e-08 61.2 46 71.7
Cc00_g06050 Coffea canephora HOM05D001978 ORTHO05D003036 6.7e-08 60.8 51 60.8
DCAR_031813 Daucus carota HOM05D001978 ORTHO05D003036 6.7e-08 60.8 47 70.2
Lsat_1_v5_gn_1_101701 Lactuca sativa HOM05D001978 ORTHO05D003036 6.7e-08 60.8 45 68.9
SGA_v2.0_scaffold119G32768 Striga asiatica HOM05D001978 ORTHO05D003036 6.7e-08 60.8 46 69.6
Aa31LG10G17320 Aethionema arabicum HOM05D001978 ORTHO05D003036 8.7e-08 60.5 47 70.2
ATR0057G059 Amborella trichopoda HOM05D001978 ORTHO05D003036 8.7e-08 60.5 51 64.7
CiPaw.13G008500 Carya illinoinensis HOM05D001978 ORTHO05D003036 8.7e-08 60.5 50 68.0
ClCG10G012130 Citrullus lanatus HOM05D001978 ORTHO05D003036 1.1e-07 60.1 47 63.8
MELO3C024002.2 Cucumis melo HOM05D001978 ORTHO05D003036 1.1e-07 60.1 47 63.8
CsaV3_3G031890 Cucumis sativus L. HOM05D001978 ORTHO05D003036 1.1e-07 60.1 47 63.8
FAN10G1732 Fragaria x ananassa HOM05D001978 ORTHO05D003036 1.1e-07 60.1 48 70.8
Sed0016255 Sechium edule HOM05D001978 ORTHO05D003036 1.1e-07 60.1 47 63.8
HanXRQChr06g0183381 Helianthus annuus HOM05D001978 ORTHO05D003036 1.5e-07 59.7 51 58.8
SalBow5G1268 Salvia bowleyana HOM05D001978 ORTHO05D003036 1.5e-07 59.7 46 67.4
SalBow5G4104 Salvia bowleyana HOM05D001978 ORTHO05D003036 1.5e-07 59.7 46 67.4
Sed0014499 Sechium edule HOM05D001978 ORTHO05D003036 1.5e-07 59.7 47 63.8
GSVIVG01001441001 Vitis vinifera HOM05D001978 ORTHO05D003036 1.5e-07 59.7 47 70.2
AL5G46320 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 1.9e-07 59.3 47 68.1
AT3G63460 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 1.9e-07 59.3 47 68.1
C04p29860 Brassica napus HOM05D001978 ORTHO05D003036 1.9e-07 59.3 47 68.1
BolC4t24517H Brassica oleracea HOM05D001978 ORTHO05D003036 1.9e-07 59.3 47 68.1
Carub.0005s3007 Capsella rubella HOM05D001978 ORTHO05D003036 1.9e-07 59.3 47 68.1
CARHR291510 Cardamine hirsuta HOM05D001978 ORTHO05D003036 1.9e-07 59.3 47 68.1
Thhalv10005758m.g Eutrema salsugineum HOM05D001978 ORTHO05D003036 1.9e-07 59.3 47 68.1
Sp5g00090 Schrenkiella parvula HOM05D001978 ORTHO05D003036 1.9e-07 59.3 47 68.1
Rhsim07G0059400 Rhododendron simsii HOM05D001978 ORTHO05D003036 2.5e-07 58.9 49 65.3
SGA_v2.0_scaffold5G02944 Striga asiatica HOM05D001978 ORTHO05D003036 2.5e-07 58.9 51 58.8
BcaC07g40813 Brassica carinata HOM05D001978 ORTHO05D003036 4.3e-07 58.2 82 47.6
A09p55140 Brassica napus HOM05D001978 ORTHO05D003036 4.3e-07 58.2 82 47.6
BraA09t40920Z Brassica rapa HOM05D001978 ORTHO05D003036 4.3e-07 58.2 82 47.6
PSO675G4117 Papaver somniferum HOM05D001978 ORTHO05D003036 4.3e-07 58.2 46 69.6
PSO732G0135 Papaver somniferum HOM05D001978 ORTHO05D003036 4.3e-07 58.2 46 69.6
vmacro13704 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 4.3e-07 58.2 49 63.3
HPP92_001385 Vanilla planifolia HOM05D001978 ORTHO05D003036 4.3e-07 58.2 51 64.7
BcaB02g08058 Brassica carinata HOM05D001978 ORTHO05D003036 5.7e-07 57.8 46 67.4
BcaC08g45262 Brassica carinata HOM05D001978 ORTHO05D003036 5.7e-07 57.8 47 66.0
A07p26260 Brassica napus HOM05D001978 ORTHO05D003036 5.7e-07 57.8 47 66.0
C06p28640 Brassica napus HOM05D001978 ORTHO05D003036 5.7e-07 57.8 47 66.0
BolC6t38032H Brassica oleracea HOM05D001978 ORTHO05D003036 5.7e-07 57.8 47 66.0
BraA07t30269Z Brassica rapa HOM05D001978 ORTHO05D003036 5.7e-07 57.8 47 66.0
SalBow6G2677 Salvia bowleyana HOM05D001978 ORTHO05D003036 5.7e-07 57.8 51 64.7
vmacro10496 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 5.7e-07 57.8 50 62.0
MBI13_g11939_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 9.6e-07 57.0 51 62.7
A09p55130 Brassica napus HOM05D001978 ORTHO05D003036 1.6e-06 56.2 82 46.3
HanXRQChr01g0015661 Helianthus annuus HOM05D001978 ORTHO05D003036 1.6e-06 56.2 46 65.2
Nn7g36348 Nelumbo nucifera HOM05D001978 ORTHO05D003036 1.6e-06 56.2 51 64.7
TPR.G3047 Trifolium pratense HOM05D001978 ORTHO05D003036 1.6e-06 56.2 47 70.2
Nn2g15171 Nelumbo nucifera HOM05D001978 ORTHO05D003036 2.1e-06 55.8 51 62.7
C08p38070 Brassica napus HOM05D001978 ORTHO05D003036 2.8e-06 55.5 47 66.0
BolC8t51381H Brassica oleracea HOM05D001978 ORTHO05D003036 2.8e-06 55.5 47 66.0
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 2.8e-06 55.5 46 69.6
Hund16631 Selenicereus undatus HOM05D001978 ORTHO05D003036 2.8e-06 55.5 47 66.0
THA.LOC104823030 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 2.8e-06 55.5 47 66.0
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 2.8e-06 55.5 76 50.0
COL.COLO4_11232 Corchorus olitorius HOM05D001978 ORTHO05D018189 3.7e-06 55.1 41 70.7
TPR.G3035 Trifolium pratense HOM05D001978 ORTHO05D003036 3.7e-06 55.1 48 66.7
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 4.8e-06 54.7 76 48.7
BraA09t40921Z Brassica rapa HOM05D001978 ORTHO05D003036 6.2e-06 54.3 82 46.3
ECA248G1610 Erigeron canadensis HOM05D001978 ORTHO05D003036 6.2e-06 54.3 46 60.9
MBI19_g16674_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 6.2e-06 54.3 52 61.5
TPR.G3036 Trifolium pratense HOM05D001978 ORTHO05D003036 6.2e-06 54.3 48 66.7


User provided reference genes

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