Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00565 Corylus avellana HOM05D004532 ORTHO05D000028 6.7e-123 444.1 238 100.0
CiPaw.06G022500 Carya illinoinensis HOM05D004532 ORTHO05D000028 6.8e-75 284.6 216 71.8
Manes.02G156400 Manihot esculenta HOM05D004532 ORTHO05D000028 7.5e-66 254.6 226 54.9
QL12p035808 Quercus lobata HOM05D004532 ORTHO05D000028 9.2e-64 247.7 184 75.0
Ciclev10003964m.g Citrus clementina HOM05D004532 ORTHO05D000028 3.8e-62 242.3 222 58.6
Prupe.1G511300 Prunus persica HOM05D004532 ORTHO05D000028 1.5e-58 230.3 227 54.2
MD15G1362500 Malus domestica HOM05D004532 ORTHO05D000028 2.0e-58 229.9 229 55.9
FAN18G3338 Fragaria x ananassa HOM05D004532 ORTHO05D000028 5.8e-58 228.4 237 53.2
FAN13G0077 Fragaria x ananassa HOM05D004532 ORTHO05D000028 2.9e-57 226.1 237 52.7
FAN08G2891 Fragaria x ananassa HOM05D004532 ORTHO05D000028 8.3e-57 224.6 237 52.7
FAN04G1122 Fragaria x ananassa HOM05D004532 ORTHO05D000028 1.1e-56 224.2 241 51.9
Gohir.D02G082700 Gossypium hirsutum HOM05D004532 ORTHO05D000028 1.9e-56 223.4 231 52.4
Gohir.A02G075600 Gossypium hirsutum HOM05D004532 ORTHO05D000028 1.6e-55 220.3 232 52.6
RcHm_v2.0_Chr7g0240061 Rosa chinensis HOM05D004532 ORTHO05D000028 2.7e-55 219.5 228 59.2
Thecc.08G112900 Theobroma cacao HOM05D004532 ORTHO05D000028 3.5e-55 219.2 237 53.2
Potri.002G092300 Populus trichocarpa HOM05D004532 ORTHO05D000028 4.6e-55 218.8 234 52.6
FvH4_5g38110 Fragaria vesca HOM05D004532 ORTHO05D000028 1.3e-54 217.2 228 53.1
TWI36G0956 Tripterygium wilfordii HOM05D004532 ORTHO05D000028 1.1e-53 214.2 235 54.5
Gorai.005G093000 Gossypium raimondii HOM05D004532 ORTHO05D000028 2.1e-52 209.9 221 52.0
THA.LOC104800165 Tarenaya hassleriana HOM05D004532 ORTHO05D000028 3.1e-51 206.1 236 45.8
Lj1g0009703 Lotus japonicus HOM05D004532 ORTHO05D000028 6.4e-49 198.4 219 51.6
COL.COLO4_16480 Corchorus olitorius HOM05D004532 ORTHO05D000028 3.2e-48 196.1 226 51.3
Nn1g08850 Nelumbo nucifera HOM05D004532 ORTHO05D000028 2.7e-47 193.0 244 45.5
Sabra02G0072700 Salix brachista HOM05D004532 ORTHO05D000028 3.5e-47 192.6 192 55.2
Glyma.13G086400 Glycine max HOM05D004532 ORTHO05D000028 4.6e-47 192.2 217 55.8
Phvul.008G170400 Phaseolus vulgaris HOM05D004532 ORTHO05D000028 1.7e-46 190.3 207 56.0
TAR376G0693 Trochodendron aralioides HOM05D004532 ORTHO05D000028 5.1e-46 188.7 222 47.7
Glyma.14G168700 Glycine max HOM05D004532 ORTHO05D000028 3.3e-45 186.0 216 53.7
arahy.Tifrunner.gnm1.ann1.GBX0EQ Arachis hypogaea HOM05D004532 ORTHO05D000028 3.6e-44 182.6 225 46.7
Cpa.g.sc66.98 Carica papaya HOM05D004532 ORTHO05D000028 4.7e-44 182.2 174 54.6
Lalb_Chr10g0102161 Lupinus albus HOM05D004532 ORTHO05D000028 8.1e-44 181.4 217 53.5
Lalb_Chr23g0270701 Lupinus albus HOM05D004532 ORTHO05D000028 5.2e-43 178.7 204 48.0
arahy.Tifrunner.gnm1.ann1.XXIH72 Arachis hypogaea HOM05D004532 ORTHO05D000028 1.5e-42 177.2 225 45.8
Ca_05235_v3 Cicer arietinum L. HOM05D004532 ORTHO05D000028 4.4e-42 175.6 219 51.1
MBI05_g00776_MAGBIO Magnolia biondii HOM05D004532 ORTHO05D000028 4.4e-42 175.6 184 52.2
FAN19G0322 Fragaria x ananassa HOM05D004532 ORTHO05D000028 1.9e-40 170.2 172 55.2
FAN26G0189 Fragaria x ananassa HOM05D004532 ORTHO05D000028 2.4e-40 169.9 172 54.7
Medtr5g061740 Medicago truncatula HOM05D004532 ORTHO05D000028 2.4e-40 169.9 222 48.6
CARHR022480 Cardamine hirsuta HOM05D004532 ORTHO05D000028 4.1e-40 169.1 237 38.8
BolC8t49778H Brassica oleracea HOM05D004532 ORTHO05D000028 9.2e-40 167.9 245 40.0
BcaC07g39146 Brassica carinata HOM05D004532 ORTHO05D000028 1.2e-39 167.5 246 40.7
C08p21390 Brassica napus HOM05D004532 ORTHO05D000028 1.2e-39 167.5 246 40.7
FAN05G4307 Fragaria x ananassa HOM05D004532 ORTHO05D000028 1.2e-39 167.5 172 54.1
AL1G35570 Arabidopsis lyrata HOM05D004532 ORTHO05D000028 2.7e-39 166.4 229 40.2
AT1G22130 Arabidopsis thaliana HOM05D004532 ORTHO05D000028 2.7e-39 166.4 239 38.9
BraA08t34789Z Brassica rapa HOM05D004532 ORTHO05D000028 2.7e-39 166.4 243 39.5
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 3.5e-39 166.0 243 39.5
Carub.0001s2168 Capsella rubella HOM05D004532 ORTHO05D000028 6.0e-39 165.2 244 40.6
FAN09G2363 Fragaria x ananassa HOM05D004532 ORTHO05D000028 7.8e-39 164.9 168 54.8
GSVIVG01022182001 Vitis vinifera HOM05D004532 ORTHO05D000028 1.0e-38 164.5 232 38.8
FAN27G1735 Fragaria x ananassa HOM05D004532 ORTHO05D000028 1.3e-38 164.1 168 54.2
Dinv13046 Davidia involucrata HOM05D004532 ORTHO05D000028 1.7e-38 163.7 193 47.7
Psat2g075120 Pisum sativum HOM05D004532 ORTHO05D000028 5.1e-38 162.2 235 46.4
FAN28G0341 Fragaria x ananassa HOM05D004532 ORTHO05D000028 8.6e-38 161.4 168 53.6
FAN19G2172 Fragaria x ananassa HOM05D004532 ORTHO05D000028 2.5e-37 159.8 168 53.6
FAN18G3329 Fragaria x ananassa HOM05D004532 ORTHO05D000028 4.3e-37 159.1 168 53.0
QL06p050456 Quercus lobata HOM05D004532 ORTHO05D000028 9.5e-37 157.9 228 40.4
MD08G1177100 Malus domestica HOM05D004532 ORTHO05D000028 1.2e-36 157.5 174 50.6
BcaC06g34931 Brassica carinata HOM05D004532 ORTHO05D000028 1.8e-35 153.7 231 41.1
Thhalv10008637m.g Eutrema salsugineum HOM05D004532 ORTHO05D000028 1.8e-35 153.7 239 39.3
A07p14740 Brassica napus HOM05D004532 ORTHO05D000028 3.1e-35 152.9 231 40.3
BraA07t29219Z Brassica rapa HOM05D004532 ORTHO05D000028 3.1e-35 152.9 231 40.3
Medtr4g084740 Medicago truncatula HOM05D004532 ORTHO05D000028 3.1e-35 152.9 223 47.5
BcaB03g14232 Brassica carinata HOM05D004532 ORTHO05D000028 4.0e-35 152.5 232 39.2
C07p21680 Brassica napus HOM05D004532 ORTHO05D000028 4.0e-35 152.5 231 40.7
FAN24G0851 Fragaria x ananassa HOM05D004532 ORTHO05D000028 4.0e-35 152.5 164 52.4
BolC7t42699H Brassica oleracea HOM05D004532 ORTHO05D000028 5.2e-35 152.1 231 40.7
FAN19G2565 Fragaria x ananassa HOM05D004532 ORTHO05D000028 1.2e-34 151.0 165 50.9
Sp1g19630 Schrenkiella parvula HOM05D004532 ORTHO05D000028 1.3e-33 147.5 162 45.7
Duzib264G0945 Durio zibethinus HOM05D004532 ORTHO05D000028 1.1e-32 144.4 234 38.5
Thecc.01G107200 Theobroma cacao HOM05D004532 ORTHO05D000028 1.4e-32 144.1 232 38.8
Aqoxy6G00549 Aquilegia oxysepala HOM05D004532 ORTHO05D000028 2.4e-32 143.3 226 39.4
PSO447G0055 Papaver somniferum HOM05D004532 ORTHO05D000028 3.2e-32 142.9 239 42.3
PSO210G0302 Papaver somniferum HOM05D004532 ORTHO05D000028 7.1e-32 141.7 241 41.9
Sed0009551 Sechium edule HOM05D004532 ORTHO05D000028 2.3e-30 136.7 237 36.3
Hma1.2p1_0120F.1_g056970 Hydrangea macrophylla HOM05D004532 ORTHO05D000028 8.7e-30 134.8 114 58.8
AUR62003761 Chenopodium quinoa HOM05D000042 ORTHO05D000028 2.5e-29 133.3 122 52.5
AL2G38240 Arabidopsis lyrata HOM05D004532 ORTHO05D000028 3.3e-29 132.9 241 34.4
Sc03g0002290 Simmondsia chinensis HOM05D004532 ORTHO05D000028 3.3e-29 132.9 205 41.0
Carub.0002s2487 Capsella rubella HOM05D004532 ORTHO05D000028 9.6e-29 131.3 237 34.6
Aa31LG4G8020 Aethionema arabicum HOM05D004532 ORTHO05D000028 3.6e-28 129.4 246 34.6
Sp5g33120 Schrenkiella parvula HOM05D004532 ORTHO05D000028 4.7e-28 129.0 231 41.6
Manes.13G090200 Manihot esculenta HOM05D004532 ORTHO05D000028 6.2e-28 128.6 245 33.5
FAN18G0149 Fragaria x ananassa HOM05D004532 ORTHO05D000028 1.1e-27 127.9 148 50.0
BcaB03g15964 Brassica carinata HOM05D000269 ORTHO05D017431 5.3e-27 125.6 239 33.9
COL.COLO4_03634 Corchorus olitorius HOM05D004532 ORTHO05D000028 6.9e-27 125.2 205 39.0
BolC6t40212H Brassica oleracea HOM05D004532 ORTHO05D000028 9.0e-27 124.8 241 35.7
Gohir.D11G224800 Gossypium hirsutum HOM05D004532 ORTHO05D000028 9.0e-27 124.8 187 45.5
AT1G77980 Arabidopsis thaliana HOM05D004532 ORTHO05D000028 1.2e-26 124.4 232 34.5
Gohir.A11G199400 Gossypium hirsutum HOM05D004532 ORTHO05D000028 1.2e-26 124.4 228 40.4
Thhalv10019686m.g Eutrema salsugineum HOM05D004532 ORTHO05D000028 3.4e-26 122.9 238 34.9
FAN24G1193 Fragaria x ananassa HOM05D004532 ORTHO05D000028 3.4e-26 122.9 160 46.2
C06p51890 Brassica napus HOM05D004532 ORTHO05D000028 4.4e-26 122.5 241 37.8
CANSAT01G2070 Cannabis sativa HOM05D004532 ORTHO05D000028 5.8e-26 122.1 229 38.0
CARHR071440 Cardamine hirsuta HOM05D004532 ORTHO05D000028 5.8e-26 122.1 239 31.0
EL10Ac6g15068 Beta vulgaris HOM05D000042 ORTHO05D000028 1.7e-25 120.6 166 41.0
TPR.G11085 Trifolium pratense HOM05D004532 ORTHO05D000028 2.2e-25 120.2 116 62.9
ClCG07G009420 Citrullus lanatus HOM05D004532 ORTHO05D000028 3.8e-25 119.4 215 35.3
Dinv21942 Davidia involucrata HOM05D004532 ORTHO05D000028 6.4e-25 118.6 250 33.2
MELO3C008942.2 Cucumis melo HOM05D004532 ORTHO05D000028 1.1e-24 117.9 241 32.4
A07p43210 Brassica napus HOM05D004532 ORTHO05D000028 1.9e-24 117.1 241 36.5
BraA07t31843Z Brassica rapa HOM05D004532 ORTHO05D000028 1.9e-24 117.1 241 36.5
PGR102G2915 Punica granatum HOM05D004532 ORTHO05D000028 4.2e-24 115.9 237 32.9
BcaC08g47635 Brassica carinata HOM05D004532 ORTHO05D000028 5.4e-24 115.5 237 34.2
CDE05G0225 Ceratophyllum demersum HOM05D000262 ORTHO05D000300 5.4e-24 115.5 228 34.6
CsaV3_4G030750 Cucumis sativus L. HOM05D004532 ORTHO05D000028 5.4e-24 115.5 243 33.7
Eucgr.H00917 Eucalyptus grandis HOM05D004532 ORTHO05D000028 7.1e-24 115.2 197 38.6
AUR62002036 Chenopodium quinoa HOM05D000042 ORTHO05D000028 9.3e-24 114.8 246 34.6
FAN14G3786 Fragaria x ananassa HOM05D004532 ORTHO05D000028 6.6e-22 108.6 171 43.9
TAR629G1408 Trochodendron aralioides HOM05D000042 ORTHO05D000028 1.5e-21 107.5 125 48.8
Atru.chr13.1272 Acer truncatum HOM05D004532 ORTHO05D000028 2.5e-21 106.7 127 47.2
Potri.007G087500 Populus trichocarpa HOM05D004532 ORTHO05D000028 9.6e-21 104.8 248 31.5
CiPaw.04G095700 Carya illinoinensis HOM05D004532 ORTHO05D000028 2.4e-19 100.1 266 33.5
DCAR_001023 Daucus carota HOM05D004532 ORTHO05D000028 2.4e-19 100.1 119 45.4
PGR042G0002 Punica granatum HOM05D004532 ORTHO05D000028 1.5e-18 97.4 178 34.8
Gorai.007G242000 Gossypium raimondii HOM05D000042 ORTHO05D000028 8.4e-17 91.7 169 37.3
MELO3C032615.2 Cucumis melo HOM05D004532 ORTHO05D000028 1.1e-16 91.3 210 40.5
CSS0038977 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 5.4e-16 89.0 231 28.1
Cfa002716 Carpinus fangiana HOM05D004532 ORTHO05D000028 5.4e-16 89.0 193 35.2
Rhsim06G0085600 Rhododendron simsii HOM05D004532 ORTHO05D000028 2.1e-15 87.0 208 31.2
AT1G77950 Arabidopsis thaliana HOM05D004532 ORTHO05D000028 2.7e-15 86.7 106 42.5
DCAR_001026 Daucus carota HOM05D004532 ORTHO05D000028 4.6e-15 85.9 109 43.1
AL2G41850 Arabidopsis lyrata HOM05D004532 ORTHO05D000028 3.9e-14 82.8 143 33.6
AL2G38220 Arabidopsis lyrata HOM05D004532 ORTHO05D000028 5.1e-14 82.4 144 34.0
DCAR_001025 Daucus carota HOM05D004532 ORTHO05D000028 5.1e-14 82.4 90 46.7
HPP92_019236 Vanilla planifolia HOM05D004532 ORTHO05D000028 8.7e-14 81.6 79 48.1
CSS0003049 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 4.3e-13 79.3 196 35.2
Os08g0494100 Oryza sativa ssp. japonica HOM05D004532 ORTHO05D000028 9.6e-13 78.2 186 32.3
ECA240G0753 Erigeron canadensis HOM05D004532 ORTHO05D000028 1.3e-12 77.8 142 33.1
HanXRQChr03g0091451 Helianthus annuus HOM05D000042 ORTHO05D000028 1.6e-12 77.4 210 27.6
Zm00001eb372610 Zea mays HOM05D004532 ORTHO05D000028 1.6e-12 77.4 243 32.9
BcaB03g15966 Brassica carinata HOM05D004532 ORTHO05D000028 8.1e-12 75.1 133 35.3
Os06g0223300 Oryza sativa ssp. japonica HOM05D004532 ORTHO05D000028 1.8e-11 73.9 222 30.2
Sp5g33100 Schrenkiella parvula HOM05D004532 ORTHO05D000028 1.8e-11 73.9 106 35.8
CARHR071430 Cardamine hirsuta HOM05D004532 ORTHO05D000028 2.4e-11 73.6 135 34.8
Lsat_1_v5_gn_3_120640 Lactuca sativa HOM05D000042 ORTHO05D000028 5.3e-11 72.4 147 34.0
Carub.0002s2485 Capsella rubella HOM05D004532 ORTHO05D000028 1.5e-10 70.9 91 39.6
BolC6t40209H Brassica oleracea HOM05D004532 ORTHO05D000028 1.0e-09 68.2 107 31.8
BraA07t31840Z Brassica rapa HOM05D004532 ORTHO05D000028 1.3e-09 67.8 109 32.1
A07p43180 Brassica napus HOM05D001837 ORTHO05D000028 2.9e-09 66.6 106 32.1
Thhalv10019795m.g Eutrema salsugineum HOM05D004532 ORTHO05D000028 2.9e-09 66.6 133 31.6
Haze_24992 Corylus avellana HOM05D000042 ORTHO05D000028 3.8e-09 66.2 79 49.4
TPR.G25942 Trifolium pratense HOM05D000042 ORTHO05D000028 1.1e-08 64.7 63 65.1
Solyc04g072725.1 Solanum lycopersicum HOM05D004532 ORTHO05D000028 1.4e-08 64.3 160 31.2
C06p51870 Brassica napus HOM05D001837 ORTHO05D000028 2.5e-08 63.5 104 31.7
C05p21220 Brassica napus HOM05D004532 ORTHO05D000028 9.3e-08 61.6 69 43.5
BolC5t30817H Brassica oleracea HOM05D004532 ORTHO05D000028 9.3e-08 61.6 69 43.5
Ah.02g122740 Amaranthus hybridus HOM05D000042 ORTHO05D000028 1.6e-07 60.8 48 54.2
Nitab4.5_0000715g0210 Nicotiana tabacum HOM05D019708 ORTHO05D022203 4.6e-07 59.3 78 41.0
HanXRQChr05g0150571 Helianthus annuus HOM05D001837 ORTHO05D000028 6.0e-07 58.9 174 28.2
Peaxi162Scf00848g00319 Petunia axillaris HOM05D004532 ORTHO05D000028 7.9e-07 58.5 94 38.3
Oeu028403.1 Olea europaea HOM05D000042 ORTHO05D000028 1.0e-06 58.2 207 28.0
Rhsim08G0008600 Rhododendron simsii HOM05D000042 ORTHO05D000028 3.9e-06 56.2 175 30.9
Duzib116G0629 Durio zibethinus HOM05D004532 ORTHO05D000028 5.1e-06 55.8 107 26.2
Sopen05g030350 Solanum pennellii HOM05D019708 ORTHO05D022203 5.1e-06 55.8 153 28.1
Cfa018031 Carpinus fangiana HOM05D004532 ORTHO05D000028 8.7e-06 55.1 98 32.7
Lj4A761T86 Lonicera japonica HOM05D004532 ORTHO05D000028 8.7e-06 55.1 117 30.8
Zm00001eb279440 Zea mays HOM05D004532 ORTHO05D000028 8.7e-06 55.1 205 29.8


User provided reference genes

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