Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 1.6e-51 205.7 98 100.0
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 1.0e-40 169.9 84 92.9
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 1.2e-38 162.9 85 88.2
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 2.1e-38 162.2 85 87.1
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 2.7e-38 161.8 85 87.1
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 3.9e-37 157.9 85 85.9
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 1.1e-36 156.4 85 82.4
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 1.1e-36 156.4 85 82.4
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 1.1e-36 156.4 85 82.4
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 2.0e-36 155.6 85 82.4
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 2.5e-36 155.2 85 82.4
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 4.3e-36 154.5 83 88.0
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 4.3e-36 154.5 83 83.1
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 4.3e-36 154.5 85 82.4
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 4.3e-36 154.5 85 82.4
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 4.3e-36 154.5 87 85.1
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 5.7e-36 154.1 85 83.5
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 1.3e-35 152.9 85 81.2
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 1.3e-35 152.9 85 84.7
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 1.7e-35 152.5 85 80.0
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 2.8e-35 151.8 85 78.8
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 2.8e-35 151.8 85 81.2
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 4.8e-35 151.0 85 81.2
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 6.3e-35 150.6 85 81.2
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 6.3e-35 150.6 83 81.9
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 6.3e-35 150.6 85 80.0
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 1.1e-34 149.8 84 82.1
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 1.8e-34 149.1 78 85.9
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 1.8e-34 149.1 86 80.2
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 2.4e-34 148.7 82 84.1
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 4.1e-34 147.9 85 78.8
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 5.3e-34 147.5 86 79.1
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 5.3e-34 147.5 86 77.9
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 6.9e-34 147.1 82 80.5
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 6.9e-34 147.1 80 81.2
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 1.5e-33 146.0 85 78.8
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 1.5e-33 146.0 86 77.9
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 1.5e-33 146.0 86 77.9
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.5e-33 146.0 83 81.9
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.5e-33 146.0 83 81.9
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.5e-33 146.0 83 79.5
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 3.4e-33 144.8 86 76.7
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 3.4e-33 144.8 86 76.7
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 3.4e-33 144.8 86 76.7
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 3.4e-33 144.8 80 80.0
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 4.5e-33 144.4 86 76.7
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 4.5e-33 144.4 86 76.7
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 4.5e-33 144.4 86 76.7
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 4.5e-33 144.4 86 79.1
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 4.5e-33 144.4 85 80.0
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 5.9e-33 144.1 89 74.2
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 5.9e-33 144.1 81 80.2
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 1.0e-32 143.3 86 76.7
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 1.0e-32 143.3 80 80.0
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 1.3e-32 142.9 80 78.8
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 1.3e-32 142.9 80 78.8
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 1.3e-32 142.9 89 74.2
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 1.3e-32 142.9 89 73.0
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 2.2e-32 142.1 87 74.7
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 2.2e-32 142.1 82 79.3
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 2.9e-32 141.7 83 79.5
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 3.8e-32 141.4 89 71.9
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 3.8e-32 141.4 80 80.0
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 3.8e-32 141.4 80 80.0
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 5.0e-32 141.0 85 78.8
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 6.5e-32 140.6 86 74.4
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 6.5e-32 140.6 85 77.6
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 1.1e-31 139.8 80 80.0
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 1.1e-31 139.8 80 80.0
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 1.1e-31 139.8 80 76.2
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 1.1e-31 139.8 80 80.0
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 1.4e-31 139.4 87 75.9
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 2.5e-31 138.7 84 75.0
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 4.2e-31 137.9 80 76.2
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 7.2e-31 137.1 82 75.6
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 9.4e-31 136.7 79 78.5
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 1.2e-30 136.3 79 77.2
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 1.2e-30 136.3 79 77.2
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 6.1e-30 134.0 79 75.9
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 3.9e-29 131.3 75 80.0
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 6.7e-29 130.6 78 75.6
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 1.5e-28 129.4 61 91.8
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 1.5e-28 129.4 79 70.9
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 4.8e-27 124.4 61 88.5
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 4.8e-27 124.4 73 74.0
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 1.1e-26 123.2 61 86.9
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.4e-26 122.9 61 88.5
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 1.8e-26 122.5 82 64.6
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.4e-26 122.1 64 81.2
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 2.6e-25 118.6 85 64.7
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 3.5e-25 118.2 61 83.6
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 8.5e-24 113.6 84 60.7
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 1.2e-22 109.8 81 60.5
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 4.0e-21 104.8 59 76.3
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 5.5e-15 84.3 44 79.5
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 3.6e-14 81.6 60 56.7
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 4.7e-14 81.3 42 83.3
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 8.3e-11 70.5 31 87.1
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 1.1e-10 70.1 85 48.2
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 2.4e-10 68.9 77 41.6
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 2.0e-09 65.9 60 48.3
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.2e-08 62.4 83 44.6
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 5.5e-07 57.8 82 40.2
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 1.2e-06 56.6 48 52.1
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 8.0e-06 53.9 29 82.8


User provided reference genes

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