Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 1.6e-129 466.1 236 100.0
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 1.9e-106 389.4 219 92.7
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 3.4e-95 352.1 219 84.0
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 8.2e-89 330.9 219 77.6
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 1.4e-80 303.5 219 70.8
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 4.1e-80 302.0 219 70.3
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 5.3e-80 301.6 233 67.8
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 3.8e-78 295.4 219 68.9
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 3.2e-77 292.4 220 69.5
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 9.4e-77 290.8 219 68.5
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 2.7e-76 289.3 220 68.6
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 3.6e-76 288.9 219 68.0
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.9e-76 287.7 220 68.2
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 1.0e-75 287.3 219 68.0
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 1.8e-75 286.6 222 68.9
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-75 286.2 220 67.7
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-75 286.2 220 67.7
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.3e-75 286.2 220 67.7
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.0e-75 285.8 220 68.2
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 6.7e-75 284.6 219 68.0
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.8e-75 284.3 220 67.3
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.8e-75 284.3 220 67.3
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.8e-75 284.3 220 67.3
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.0e-74 283.1 220 67.3
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 2.0e-74 283.1 205 70.7
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 3.3e-74 282.3 220 66.8
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 3.3e-74 282.3 220 67.7
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 5.7e-74 281.6 219 66.7
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 4.8e-73 278.5 222 66.2
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 4.8e-73 278.5 219 64.8
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.4e-72 276.9 220 66.8
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 1.8e-72 276.6 222 65.3
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 1.8e-72 276.6 222 65.8
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 1.8e-72 276.6 222 66.2
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 3.1e-72 275.8 222 65.8
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 4.1e-72 275.4 219 67.1
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 4.1e-72 275.4 222 65.8
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 1.2e-71 273.9 220 65.5
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 2.6e-71 272.7 222 65.8
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 7.7e-71 271.2 220 64.5
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 1.0e-70 270.8 220 64.1
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.0e-70 270.8 219 65.3
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 2.9e-70 269.2 221 63.3
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 5.0e-70 268.5 203 68.0
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 1.1e-69 267.3 219 63.0
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.4e-69 266.9 214 63.1
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 1.9e-69 266.5 211 67.3
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 4.2e-69 265.4 221 62.9
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 9.4e-69 264.2 213 64.3
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 9.4e-69 264.2 222 62.6
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 1.2e-68 263.8 220 64.5
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 1.2e-68 263.8 223 63.7
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 1.6e-68 263.5 219 64.4
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 2.7e-68 262.7 221 62.0
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 3.6e-68 262.3 223 62.3
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 2.3e-67 259.6 219 59.8
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 1.1e-66 257.3 219 60.3
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.1e-66 257.3 224 62.5
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.0e-66 256.5 210 66.7
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 2.0e-66 256.5 249 58.2
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 4.4e-66 255.4 221 62.0
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 2.2e-65 253.1 215 65.1
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 3.7e-65 252.3 219 58.9
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 1.4e-64 250.4 219 58.4
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 3.1e-64 249.2 215 65.1
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 5.3e-64 248.4 212 63.7
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 9.1e-64 247.7 215 64.2
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.5e-63 246.9 211 62.6
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.6e-63 246.1 214 61.2
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 4.5e-63 245.4 211 61.1
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 7.7e-63 244.6 219 58.4
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 7.7e-63 244.6 217 60.4
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 5.0e-62 241.9 219 58.9
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.5e-62 241.5 199 65.3
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 1.1e-61 240.7 219 58.9
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 2.5e-61 239.6 219 58.4
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 2.5e-61 239.6 211 62.6
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 3.2e-61 239.2 219 58.0
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 5.5e-61 238.4 219 57.5
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 5.5e-61 238.4 219 57.5
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 5.5e-61 238.4 211 60.7
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 5.5e-61 238.4 174 71.8
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 7.2e-61 238.0 219 58.0
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 2.1e-60 236.5 219 57.1
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 2.7e-60 236.1 219 57.1
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.6e-60 235.7 197 66.0
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 4.7e-60 235.3 190 64.7
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 4.7e-60 235.3 227 55.5
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 6.1e-60 235.0 219 56.6
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 8.0e-60 234.6 211 61.1
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 3.0e-59 232.6 207 59.9
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 8.8e-59 231.1 211 58.3
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 2.0e-58 229.9 204 60.3
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 3.3e-58 229.2 184 65.8
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 3.3e-58 229.2 256 56.2
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 2.2e-57 226.5 266 53.0
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 2.8e-57 226.1 208 58.2
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 6.3e-57 224.9 238 53.8
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 5.3e-56 221.9 223 57.0
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.3e-56 221.9 167 69.5
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 1.2e-55 220.7 218 56.9
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 5.9e-55 218.4 185 61.1
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 7.7e-55 218.0 234 50.9
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 2.9e-54 216.1 213 54.5
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 3.8e-54 215.7 178 66.9
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 6.5e-54 214.9 343 40.5
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.5e-53 213.8 187 63.1
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 2.5e-53 213.0 218 57.3
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 3.2e-53 212.6 191 61.8
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 4.2e-53 212.2 187 62.6
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 7.2e-53 211.5 225 54.7
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 9.4e-53 211.1 225 54.2
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 2.7e-52 209.5 267 46.8
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 2.7e-52 209.5 252 51.6
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.0e-51 207.6 184 60.9
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.0e-51 207.6 154 69.5
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 6.8e-51 204.9 200 57.5
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 4.4e-50 202.2 211 55.5
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 2.4e-48 196.4 189 57.7
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 3.5e-47 192.6 162 64.2
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 7.7e-47 191.4 208 55.3
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 5.0e-46 188.7 252 46.4
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 2.3e-43 179.9 148 67.6
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.8e-43 177.9 148 64.2
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 3.4e-42 176.0 133 72.9
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 5.7e-42 175.3 182 56.6
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 3.5e-39 166.0 189 50.8
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 1.0e-38 164.5 138 63.8
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 2.3e-38 163.3 135 66.7
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 3.8e-38 162.5 153 60.1
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 3.0e-35 152.9 125 65.6
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 1.7e-33 147.1 137 60.6
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 2.9e-33 146.4 144 56.9
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 3.5e-31 139.4 97 75.3
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 3.9e-30 136.0 153 52.3
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.8e-27 127.1 94 67.0
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 4.6e-23 112.5 189 40.7
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 6.0e-23 112.1 197 37.6
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 6.6e-22 108.6 195 38.5
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 8.6e-22 108.2 91 62.6
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 1.6e-20 104.0 116 50.0
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 6.2e-20 102.1 150 42.0
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 8.1e-20 101.7 143 46.9
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 5.8e-18 95.5 182 34.6
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.3e-17 94.4 68 67.6
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 8.3e-17 91.7 56 76.8
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 1.6e-15 87.4 87 56.3
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 5.1e-14 82.4 90 52.2
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 3.6e-12 76.3 114 43.0
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.6e-07 60.8 69 50.7


User provided reference genes

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