Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0553431 Helianthus annuus HOM05D000560 ORTHO05D000417 7.7e-39 163.3 81 100.0
HanXRQChr09g0251241 Helianthus annuus HOM05D002361 ORTHO05D000417 1.0e-38 162.9 80 100.0
HanXRQChr10g0305251 Helianthus annuus HOM05D000560 ORTHO05D000417 2.9e-17 91.7 46 91.3
HanXRQChr12g0359021 Helianthus annuus HOM05D000560 ORTHO05D000417 1.3e-14 82.8 46 78.3
ECA234G1991 Erigeron canadensis HOM05D000560 ORTHO05D000417 2.3e-14 82.0 52 67.3
HanXRQChr05g0147081 Helianthus annuus HOM05D000560 ORTHO05D225484 2.5e-13 78.6 41 90.2
HanXRQChr10g0305231 Helianthus annuus HOM05D000560 ORTHO05D000417 1.2e-12 76.3 46 71.7
Oeu022782.2 Olea europaea HOM05D000560 ORTHO05D000417 2.8e-12 75.1 46 71.7
Oeu056219.1 Olea europaea HOM05D000560 ORTHO05D000417 2.8e-12 75.1 46 71.7
Lsat_1_v5_gn_5_79541 Lactuca sativa HOM05D000560 ORTHO05D000417 1.1e-11 73.2 45 73.3
Cc08_g01310 Coffea canephora HOM05D000560 ORTHO05D000417 1.8e-11 72.4 46 69.6
Oeu003978.1 Olea europaea HOM05D000560 ORTHO05D000417 1.8e-11 72.4 46 67.4
Lsat_1_v5_gn_5_79561 Lactuca sativa HOM05D000560 ORTHO05D000417 2.3e-11 72.0 38 81.6
ECA234G1451 Erigeron canadensis HOM05D000560 ORTHO05D000417 3.1e-11 71.6 52 61.5
SalBow1G5159 Salvia bowleyana HOM05D000560 ORTHO05D000417 4.0e-11 71.2 46 67.4
Lj8A482T27 Lonicera japonica HOM05D000560 ORTHO05D000417 6.8e-11 70.5 49 61.2
MSTRG.14062 Avicennia marina HOM05D000560 ORTHO05D000417 1.5e-10 69.3 42 73.8
Oeu027283.1 Olea europaea HOM05D000560 ORTHO05D000417 1.5e-10 69.3 46 65.2
DCAR_000820 Daucus carota HOM05D000560 ORTHO05D000417 2.6e-10 68.6 42 69.0
Migut.E01573 Erythranthe guttata HOM05D000560 ORTHO05D000417 2.6e-10 68.6 46 63.0
PGSC0003DMG400029879 Solanum tuberosum HOM05D000560 ORTHO05D000417 3.4e-10 68.2 49 61.2
SGA_v2.0_scaffold163G38001 Striga asiatica HOM05D000560 ORTHO05D000417 4.4e-10 67.8 42 69.0
VMungo1309G0519 Vigna mungo HOM05D000560 ORTHO05D000417 4.4e-10 67.8 45 66.7
DCAR_003714 Daucus carota HOM05D000560 ORTHO05D000417 1.3e-09 66.2 46 58.7
GSVIVG01035448001 Vitis vinifera HOM05D000560 ORTHO05D000417 1.3e-09 66.2 44 63.6
Lj1g0002367 Lotus japonicus HOM05D000560 ORTHO05D000417 1.7e-09 65.9 46 63.0
Cfa018010 Carpinus fangiana HOM05D000560 ORTHO05D000417 2.2e-09 65.5 45 64.4
Haze_18119 Corylus avellana HOM05D000560 ORTHO05D000417 2.9e-09 65.1 45 64.4
Peaxi162Scf00101g01412 Petunia axillaris HOM05D000560 ORTHO05D000417 2.9e-09 65.1 51 56.9
DCAR_004384 Daucus carota HOM05D000560 ORTHO05D000417 3.7e-09 64.7 42 66.7
Lj7A225T45 Lonicera japonica HOM05D000560 ORTHO05D000417 3.7e-09 64.7 46 63.0
Lj7A228T31 Lonicera japonica HOM05D000560 ORTHO05D000417 3.7e-09 64.7 46 63.0
Nitab4.5_0004953g0020 Nicotiana tabacum HOM05D000560 ORTHO05D000417 3.7e-09 64.7 46 60.9
Nitab4.5_0011065g0010 Nicotiana tabacum HOM05D000560 ORTHO05D000417 3.7e-09 64.7 46 60.9
unitig_749.g13834 Utricularia gibba HOM05D000560 ORTHO05D000417 3.7e-09 64.7 46 60.9
AL6G22870 Arabidopsis lyrata HOM05D000560 ORTHO05D000417 4.9e-09 64.3 46 60.9
AT5G12080 Arabidopsis thaliana HOM05D000560 ORTHO05D000417 4.9e-09 64.3 46 60.9
Glyma.04G055200 Glycine max HOM05D000560 ORTHO05D000417 6.4e-09 63.9 42 66.7
Glyma.06G055400 Glycine max HOM05D000560 ORTHO05D000417 6.4e-09 63.9 42 66.7
Phvul.009G081300 Phaseolus vulgaris HOM05D000560 ORTHO05D000417 6.4e-09 63.9 45 64.4
CAN.G42.12 Capsicum annuum HOM05D000560 ORTHO05D000417 8.3e-09 63.5 51 56.9
Solyc08g061980.4 Solanum lycopersicum HOM05D000560 ORTHO05D000417 1.1e-08 63.2 46 60.9
Dinv41835 Davidia involucrata HOM05D000560 ORTHO05D000417 1.4e-08 62.8 45 62.2
Lalb_Chr08g0244851 Lupinus albus HOM05D000560 ORTHO05D000417 1.4e-08 62.8 46 63.0
Potri.006G222500 Populus trichocarpa HOM05D000560 ORTHO05D000417 1.9e-08 62.4 45 62.2
arahy.Tifrunner.gnm1.ann1.044LWD Arachis hypogaea HOM05D000560 ORTHO05D000417 3.2e-08 61.6 45 62.2
arahy.Tifrunner.gnm1.ann1.745V0L Arachis hypogaea HOM05D000560 ORTHO05D000417 3.2e-08 61.6 45 62.2
Sopen08g017540 Solanum pennellii HOM05D000560 ORTHO05D000417 3.2e-08 61.6 46 58.7
TWI34G1445 Tripterygium wilfordii HOM05D000560 ORTHO05D000417 3.2e-08 61.6 41 68.3
Migut.A00089 Erythranthe guttata HOM05D000560 ORTHO05D000417 4.1e-08 61.2 46 56.5
PGSC0003DMG400021745 Solanum tuberosum HOM05D000560 ORTHO05D000417 4.1e-08 61.2 46 58.7
CSS0045454 Camellia sinensis var. sinensis HOM05D000560 ORTHO05D000417 5.4e-08 60.8 46 60.9
Psat0s1070g0120 Pisum sativum HOM05D000560 ORTHO05D000417 5.4e-08 60.8 47 61.7
Sp6g31540 Schrenkiella parvula HOM05D000560 ORTHO05D000417 7.1e-08 60.5 45 57.8
Aa31LG3G15140 Aethionema arabicum HOM05D000560 ORTHO05D000417 9.2e-08 60.1 46 58.7
Migut.A00088 Erythranthe guttata HOM05D000560 ORTHO05D000417 1.2e-07 59.7 42 61.9
Nitab4.5_0008066g0020 Nicotiana tabacum HOM05D000560 ORTHO05D000417 1.2e-07 59.7 46 58.7
Oeu018030.1 Olea europaea HOM05D000560 ORTHO05D000417 1.2e-07 59.7 42 64.3
Psat0s2363g0040 Pisum sativum HOM05D000560 ORTHO05D000417 1.2e-07 59.7 47 59.6
CARHR193380 Cardamine hirsuta HOM05D000560 ORTHO05D000417 1.6e-07 59.3 41 63.4
Haze_18120 Corylus avellana HOM05D000560 ORTHO05D000417 1.6e-07 59.3 45 60.0
Haze_18121 Corylus avellana HOM05D000560 ORTHO05D000417 1.6e-07 59.3 45 60.0
Actinidia03542 Actinidia chinensis HOM05D000560 ORTHO05D000417 2.7e-07 58.5 46 56.5
BcaB01g04856 Brassica carinata HOM05D000560 ORTHO05D000417 2.7e-07 58.5 41 63.4
BcaC03g13410 Brassica carinata HOM05D000560 ORTHO05D000417 2.7e-07 58.5 42 64.3
C02p05600 Brassica napus HOM05D000560 ORTHO05D000417 2.7e-07 58.5 42 64.3
BolC2t06504H Brassica oleracea HOM05D000560 ORTHO05D000417 2.7e-07 58.5 42 64.3
CANSAT25G1174 Cannabis sativa HOM05D000560 ORTHO05D000417 2.7e-07 58.5 38 65.8
MD15G1052100 Malus domestica HOM05D000560 ORTHO05D000417 2.7e-07 58.5 41 68.3
Sp6g24880 Schrenkiella parvula HOM05D000560 ORTHO05D000417 2.7e-07 58.5 41 63.4
A02p01360 Brassica napus HOM05D000560 ORTHO05D000417 3.5e-07 58.2 42 64.3
A10p25710 Brassica napus HOM05D000560 ORTHO05D000417 3.5e-07 58.2 47 57.4
C09p64780 Brassica napus HOM05D000560 ORTHO05D000417 3.5e-07 58.2 47 57.4
BolC9t59309H Brassica oleracea HOM05D000560 ORTHO05D000417 3.5e-07 58.2 47 57.4
BraA02t05115Z Brassica rapa HOM05D000560 ORTHO05D000417 3.5e-07 58.2 42 64.3
BraA10t44636Z Brassica rapa HOM05D000560 ORTHO05D000417 3.5e-07 58.2 47 57.4
CARHR201050 Cardamine hirsuta HOM05D000560 ORTHO05D000417 3.5e-07 58.2 47 59.6
Thhalv10012772m.g Eutrema salsugineum HOM05D000560 ORTHO05D000417 3.5e-07 58.2 47 57.4
Sabra06G0172000 Salix brachista HOM05D000560 ORTHO05D000417 3.5e-07 58.2 41 61.0
SalBow4G1728 Salvia bowleyana HOM05D000560 ORTHO05D000417 3.5e-07 58.2 38 65.8
Carub.0006s1059 Capsella rubella HOM05D000560 ORTHO05D000417 4.6e-07 57.8 47 59.6
Psat1g132880 Pisum sativum HOM05D000560 ORTHO05D000417 4.6e-07 57.8 50 52.0
PGR031G1147 Punica granatum HOM05D000560 ORTHO05D000417 4.6e-07 57.8 41 61.0
TWI34G0292 Tripterygium wilfordii HOM05D000560 ORTHO05D000417 4.6e-07 57.8 49 57.1
unitig_578.g16566 Utricularia gibba HOM05D000560 ORTHO05D000417 4.6e-07 57.8 41 61.0
C03p11100 Brassica napus HOM05D000560 ORTHO05D000417 6.0e-07 57.4 41 63.4
BolC3t13580H Brassica oleracea HOM05D000560 ORTHO05D000417 6.0e-07 57.4 41 63.4
BraA10t44090Z Brassica rapa HOM05D000560 ORTHO05D000417 6.0e-07 57.4 39 64.1
ECA247G3276 Erigeron canadensis HOM05D000560 ORTHO05D000417 6.0e-07 57.4 52 51.9
PGR031G2024 Punica granatum HOM05D000560 ORTHO05D000417 6.0e-07 57.4 53 49.1
ECA246G3799 Erigeron canadensis HOM05D000560 ORTHO05D000417 7.8e-07 57.0 43 58.1
Eucgr.C00712 Eucalyptus grandis HOM05D000560 ORTHO05D000417 7.8e-07 57.0 41 61.0
Gohir.A06G075500 Gossypium hirsutum HOM05D000560 ORTHO05D000417 7.8e-07 57.0 46 54.3
Gohir.D06G074400 Gossypium hirsutum HOM05D000560 ORTHO05D000417 7.8e-07 57.0 46 54.3
Gorai.010G086800 Gossypium raimondii HOM05D000560 ORTHO05D000417 7.8e-07 57.0 46 54.3
AT5G19520 Arabidopsis thaliana HOM05D000560 ORTHO05D000417 1.0e-06 56.6 41 58.5
A03p05400 Brassica napus HOM05D000560 ORTHO05D000417 1.0e-06 56.6 47 57.4
BraA03t09879Z Brassica rapa HOM05D000560 ORTHO05D000417 1.0e-06 56.6 47 57.4
Eucgr.C00709 Eucalyptus grandis HOM05D000560 ORTHO05D000417 1.0e-06 56.6 41 61.0
Prupe.1G406100 Prunus persica HOM05D000560 ORTHO05D000417 1.0e-06 56.6 41 63.4
TPR.G3562 Trifolium pratense HOM05D000560 ORTHO05D000417 1.0e-06 56.6 47 59.6
Actinidia25698 Actinidia chinensis HOM05D000560 ORTHO05D000417 1.3e-06 56.2 42 59.5
BcaB01g04857 Brassica carinata HOM05D000560 ORTHO05D000417 1.3e-06 56.2 41 61.0
A03p09510 Brassica napus HOM05D000560 ORTHO05D000417 1.3e-06 56.2 41 61.0
BraA03t10269Z Brassica rapa HOM05D000560 ORTHO05D000417 1.3e-06 56.2 41 61.0
CANSAT25G1575 Cannabis sativa HOM05D000560 ORTHO05D000417 1.3e-06 56.2 38 63.2
Duzib168G1529 Durio zibethinus HOM05D000560 ORTHO05D000417 1.3e-06 56.2 46 54.3
Nn6g35594 Nelumbo nucifera HOM05D000560 ORTHO05D000417 1.3e-06 56.2 51 47.1
Nitab4.5_0009678g0030 Nicotiana tabacum HOM05D000560 ORTHO05D000417 1.3e-06 56.2 46 54.3
Sp6g24870 Schrenkiella parvula HOM05D000560 ORTHO05D000417 1.3e-06 56.2 41 61.0
C03p11090 Brassica napus HOM05D000560 ORTHO05D000417 1.7e-06 55.8 41 61.0
BolC3t13579H Brassica oleracea HOM05D000560 ORTHO05D000417 1.7e-06 55.8 41 61.0
CANSAT25G2361 Cannabis sativa HOM05D000560 ORTHO05D000417 1.7e-06 55.8 38 63.2
BcaB01g05430 Brassica carinata HOM05D000560 ORTHO05D000417 2.3e-06 55.5 36 63.9
BolC3t13137H Brassica oleracea HOM05D000560 ORTHO05D000417 2.3e-06 55.5 36 63.9
CSS0044558 Camellia sinensis var. sinensis HOM05D000560 ORTHO05D000417 2.3e-06 55.5 46 56.5
Eucgr.C00714 Eucalyptus grandis HOM05D000560 ORTHO05D000417 2.3e-06 55.5 46 52.2
Eucgr.C00715 Eucalyptus grandis HOM05D000560 ORTHO05D000417 2.3e-06 55.5 46 52.2
PGR031G2402 Punica granatum HOM05D000560 ORTHO05D000417 2.3e-06 55.5 45 55.6
THA.LOC104799147 Tarenaya hassleriana HOM05D000560 ORTHO05D000417 2.3e-06 55.5 41 58.5
THA.LOC104811217 Tarenaya hassleriana HOM05D000560 ORTHO05D000417 2.3e-06 55.5 46 50.0
TPR.G29499 Trifolium pratense HOM05D000560 ORTHO05D000417 2.3e-06 55.5 50 50.0
C03p06290 Brassica napus HOM05D000560 ORTHO05D000417 3.0e-06 55.1 36 63.9
CSS0022934 Camellia sinensis var. sinensis HOM05D000560 ORTHO05D000417 3.0e-06 55.1 46 56.5
Ca_13351_v3 Cicer arietinum L. HOM05D000560 ORTHO05D000417 3.0e-06 55.1 50 50.0
Ca_15837_v3 Cicer arietinum L. HOM05D000560 ORTHO05D000417 3.0e-06 55.1 47 57.4
Psat0s2363g0160 Pisum sativum HOM05D000560 ORTHO05D000417 3.0e-06 55.1 47 57.4
TPR.G3556 Trifolium pratense HOM05D000560 ORTHO05D000417 3.0e-06 55.1 47 57.4
AL6G31030 Arabidopsis lyrata HOM05D000560 ORTHO05D000417 3.9e-06 54.7 41 56.1
CANSAT25G2363 Cannabis sativa HOM05D000560 ORTHO05D000417 3.9e-06 54.7 38 60.5
Thhalv10015373m.g Eutrema salsugineum HOM05D000560 ORTHO05D000417 3.9e-06 54.7 41 58.5
Glyma.09G067800 Glycine max HOM05D000560 ORTHO05D000417 3.9e-06 54.7 50 50.0
Manes.16G084300 Manihot esculenta HOM05D000560 ORTHO05D000417 3.9e-06 54.7 41 58.5
Phvul.009G228800 Phaseolus vulgaris HOM05D000560 ORTHO05D000417 3.9e-06 54.7 58 48.3
BcaB05g23385 Brassica carinata HOM05D000560 ORTHO05D000417 5.1e-06 54.3 39 59.0
BcaC03g13682 Brassica carinata HOM05D000560 ORTHO05D000417 5.1e-06 54.3 39 59.0
A02p05610 Brassica napus HOM05D000560 ORTHO05D000417 5.1e-06 54.3 39 59.0
BNapus_Darmor_BZH_scaffold_38p02350 Brassica napus HOM05D000560 ORTHO05D000417 5.1e-06 54.3 39 59.0
BolC2t06960H Brassica oleracea HOM05D000560 ORTHO05D000417 5.1e-06 54.3 39 59.0
BraA02t05513Z Brassica rapa HOM05D000560 ORTHO05D000417 5.1e-06 54.3 39 59.0
Ciclev10010725m.g Citrus clementina HOM05D000560 ORTHO05D000417 5.1e-06 54.3 41 63.4
Thhalv10000065m.g Eutrema salsugineum HOM05D000560 ORTHO05D000417 5.1e-06 54.3 39 59.0
FAN27G0255 Fragaria x ananassa HOM05D000560 ORTHO05D000417 5.1e-06 54.3 42 59.5
MD08G1070000 Malus domestica HOM05D000560 ORTHO05D000417 5.1e-06 54.3 41 61.0
Nitab4.5_0004953g0030 Nicotiana tabacum HOM05D000560 ORTHO05D000417 5.1e-06 54.3 46 52.2
QL02p000188 Quercus lobata HOM05D000560 ORTHO05D000417 5.1e-06 54.3 45 53.3
Eucgr.C03563 Eucalyptus grandis HOM05D000560 ORTHO05D000417 6.6e-06 53.9 50 52.0
TAR383G0205 Trochodendron aralioides HOM05D000560 ORTHO05D000417 6.6e-06 53.9 49 46.9
TAR626G0237 Trochodendron aralioides HOM05D000560 ORTHO05D000417 6.6e-06 53.9 45 53.3
VMungo1309G1121 Vigna mungo HOM05D000560 ORTHO05D000417 6.6e-06 53.9 58 48.3
Actinidia39677 Actinidia chinensis HOM05D000560 ORTHO05D000417 8.6e-06 53.5 46 52.2
Aa31LG1G8890 Aethionema arabicum HOM05D000560 ORTHO05D000417 8.6e-06 53.5 48 56.2
A03p27170 Brassica napus HOM05D000560 ORTHO05D000417 8.6e-06 53.5 38 60.5
BraA03t11930Z Brassica rapa HOM05D000560 ORTHO05D000417 8.6e-06 53.5 38 60.5
Eucgr.C00836 Eucalyptus grandis HOM05D000560 ORTHO05D000417 8.6e-06 53.5 46 54.3
Thecc.09G080700 Theobroma cacao HOM05D000560 ORTHO05D000417 8.6e-06 53.5 46 52.2


User provided reference genes

Program Settings