Gene: AT5G12080
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G12080
- Transcript Identifier AT5G12080.3
- Gene Type Coding gene
- Location Chr5 : 3898182-3900923 : negative
Gene Family Information
- ID HOM05D000560
- #Genes/#Species 984/100
- Phylogenetic origin
- ID ORTHO05D000417
- #Genes/#Species 959/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G12080.3
- symbol MSL10
- Alias ATMSL10
- uniprot Q9LYG9
Descriptions
- Description mechanosensitive channel of small conductance-like 10
- Computational description mechanosensitive channel of small conductance-like 10 (MSL10); FUNCTIONS IN: mechanically-gated ion channel activity; INVOLVED IN: detection of mechanical stimulus; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 9 (TAIR:AT5G19520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Computational description mechanosensitive channel of small conductance-like 10 (MSL10); FUNCTIONS IN: mechanically-gated ion channel activity; INVOLVED IN: detection of mechanical stimulus; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Membrane protein, At2g17000, predicted (InterPro:IPR016688), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Mechanosensitive ion channel MscS (InterPro:IPR006685); BEST Arabidopsis thaliana protein match is: mechanosensitive channel of small conductance-like 9 (TAIR:AT5G19520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0050982 | IMP IBA | Gene Ontology | detection of mechanical stimulus | 1 2 |
| GO:0055085 | IEA | GOA Database | transmembrane transport | |
| GO:0055085 | IEA | InterPro | transmembrane transport | |
| GO:0006811 | IEA | GOA Database | ion transport | |
| GO:0034220 | IEA | GOA Database | ion transmembrane transport | |
| GO:0006820 | IDA IBA | Gene Ontology | anion transport | 2 3 |
| GO:0097468 | IMP | Gene Ontology | programmed cell death in response to reactive oxygen species | 4 |
| GO:0010150 | IMP | Gene Ontology | leaf senescence | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008381 | IDA, IMP IBA | Gene Ontology | mechanosensitive ion channel activity | 1 2 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016020 | IEA | InterPro | membrane | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0005886 | IEA | GOA Database | plasma membrane | |
| GO:0005886 | IDA, HDA IBA | Gene Ontology | plasma membrane | 1 2 5 |
| GO:0005634 | ISM | Gene Ontology | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 24.3.5 | Solute transport.channels.mechanosensitive ion channel (MSL) |