Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0540711 Helianthus annuus HOM05D000327 ORTHO05D000218 1.2e-35 152.5 69 100.0
HanXRQChr04g0115191 Helianthus annuus HOM05D000327 ORTHO05D000218 7.8e-24 113.2 70 77.1
Prupe.4G108300 Prunus persica HOM05D000327 ORTHO05D000218 6.2e-13 77.0 67 52.2
Rhsim13G0129700 Rhododendron simsii HOM05D000327 ORTHO05D000218 6.2e-13 77.0 67 56.7
Medtr2g028870 Medicago truncatula HOM05D000327 ORTHO05D000218 1.8e-12 75.5 67 56.7
Glyma.15G126500 Glycine max HOM05D000327 ORTHO05D000218 2.4e-12 75.1 67 55.2
Psat1g169960 Pisum sativum HOM05D000327 ORTHO05D000218 2.4e-12 75.1 67 55.2
Cc09_g06790 Coffea canephora HOM05D000327 ORTHO05D000218 3.1e-12 74.7 67 49.3
FAN16G2218 Fragaria x ananassa HOM05D000327 ORTHO05D000218 4.0e-12 74.3 67 53.7
FAN16G2897 Fragaria x ananassa HOM05D000327 ORTHO05D000218 4.0e-12 74.3 67 53.7
FAN21G1375 Fragaria x ananassa HOM05D000327 ORTHO05D000218 4.0e-12 74.3 67 53.7
Nn7g38067 Nelumbo nucifera HOM05D000327 ORTHO05D000218 4.0e-12 74.3 67 55.2
RcHm_v2.0_Chr5g0019691 Rosa chinensis HOM05D000327 ORTHO05D000218 4.0e-12 74.3 67 53.7
FAN25G1512 Fragaria x ananassa HOM05D000327 ORTHO05D000218 5.3e-12 73.9 67 53.7
Ca_11353_v3 Cicer arietinum L. HOM05D000327 ORTHO05D000218 6.9e-12 73.6 67 52.2
TPR.G17509 Trifolium pratense HOM05D000327 ORTHO05D000218 9.0e-12 73.2 67 53.7
CSS0027721 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 1.2e-11 72.8 72 50.0
HanXRQChr14g0447551 Helianthus annuus HOM05D000327 ORTHO05D000218 1.2e-11 72.8 70 50.0
vmacro03500 Vaccinium macrocarpon HOM05D000327 ORTHO05D000218 1.2e-11 72.8 67 53.7
CSS0048794 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 1.5e-11 72.4 72 50.0
FvH4_3g12010 Fragaria vesca HOM05D000327 ORTHO05D000218 1.5e-11 72.4 67 52.2
CSS0005495 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 2.0e-11 72.0 67 52.2
CSS0019482 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 2.0e-11 72.0 67 50.7
CSS0046162 Camellia sinensis var. sinensis HOM05D000327 ORTHO05D000218 2.0e-11 72.0 67 50.7
GSVIVG01026257001 Vitis vinifera HOM05D000327 ORTHO05D000218 2.0e-11 72.0 67 52.2
CiPaw.09G079300 Carya illinoinensis HOM05D000327 ORTHO05D000218 2.6e-11 71.6 67 50.7
Duzib192G0490 Durio zibethinus HOM05D000327 ORTHO05D000218 2.6e-11 71.6 67 50.7
TAR627G1088 Trochodendron aralioides HOM05D000327 ORTHO05D000218 2.6e-11 71.6 67 52.2
Actinidia22379 Actinidia chinensis HOM05D000327 ORTHO05D000218 3.4e-11 71.2 67 50.7
Ca_18777_v3 Cicer arietinum L. HOM05D000327 ORTHO05D000218 3.4e-11 71.2 65 52.3
Ciclev10014925m.g Citrus clementina HOM05D000327 ORTHO05D000218 3.4e-11 71.2 67 49.3
Dinv11865 Davidia involucrata HOM05D000327 ORTHO05D000218 3.4e-11 71.2 67 52.2
Duzib160G0717 Durio zibethinus HOM05D000327 ORTHO05D000218 3.4e-11 71.2 67 50.7
Lj1A1142T64 Lonicera japonica HOM05D000327 ORTHO05D000218 3.4e-11 71.2 67 52.2
Cfa000730 Carpinus fangiana HOM05D000327 ORTHO05D000218 4.5e-11 70.9 67 50.7
COL.COLO4_30955 Corchorus olitorius HOM05D000327 ORTHO05D000218 4.5e-11 70.9 67 50.7
Haze_06012 Corylus avellana HOM05D000327 ORTHO05D000218 4.5e-11 70.9 67 50.7
Migut.M01965 Erythranthe guttata HOM05D000327 ORTHO05D000218 4.5e-11 70.9 67 52.2
Atru.chr10.604 Acer truncatum HOM05D000327 ORTHO05D000218 5.8e-11 70.5 65 50.8
Cpa.g.sc135.38 Carica papaya HOM05D000327 ORTHO05D000218 5.8e-11 70.5 67 50.7
CiPaw.10G065900 Carya illinoinensis HOM05D000327 ORTHO05D000218 5.8e-11 70.5 67 50.7
Gohir.A05G144400 Gossypium hirsutum HOM05D000327 ORTHO05D000218 5.8e-11 70.5 67 49.3
Gohir.D05G146800 Gossypium hirsutum HOM05D000327 ORTHO05D000218 5.8e-11 70.5 67 49.3
Gorai.009G150700 Gossypium raimondii HOM05D000327 ORTHO05D000218 5.8e-11 70.5 67 49.3
Thecc.06G138800 Theobroma cacao HOM05D000327 ORTHO05D000218 5.8e-11 70.5 67 49.3
Aa31LG6G2220 Aethionema arabicum HOM05D000327 ORTHO05D000218 7.6e-11 70.1 69 52.2
Glyma.09G020000 Glycine max HOM05D000327 ORTHO05D000218 7.6e-11 70.1 67 52.2
Phvul.006G131900 Phaseolus vulgaris HOM05D000327 ORTHO05D000218 7.6e-11 70.1 67 52.2
ECA238G3547 Erigeron canadensis HOM05D000327 ORTHO05D000218 1.3e-10 69.3 67 47.8
Sabra12G0089700 Salix brachista HOM05D000327 ORTHO05D000218 1.7e-10 68.9 67 52.2
ClCG01G009130 Citrullus lanatus HOM05D000327 ORTHO05D000218 2.2e-10 68.6 67 50.7
Thhalv10024888m.g Eutrema salsugineum HOM05D000327 ORTHO05D000218 2.2e-10 68.6 62 53.2
MD10G1236000 Malus domestica HOM05D000327 ORTHO05D000218 2.2e-10 68.6 65 49.2
THA.LOC104811473 Tarenaya hassleriana HOM05D000327 ORTHO05D000218 2.2e-10 68.6 67 49.3
Lalb_Chr16g0385331 Lupinus albus HOM05D000327 ORTHO05D000218 2.9e-10 68.2 66 51.5
QL11p018227 Quercus lobata HOM05D000327 ORTHO05D000218 2.9e-10 68.2 67 50.7
Duzib235G0173 Durio zibethinus HOM05D000327 ORTHO05D000218 3.8e-10 67.8 67 47.8
TAR626G1690 Trochodendron aralioides HOM05D000327 ORTHO05D000218 3.8e-10 67.8 67 49.3
DCAR_007792 Daucus carota HOM05D000327 ORTHO05D000218 4.9e-10 67.4 67 47.8
Sed0026999 Sechium edule HOM05D000327 ORTHO05D000218 4.9e-10 67.4 67 50.7
Lalb_Chr09g0328781 Lupinus albus HOM05D000327 ORTHO05D000218 6.4e-10 67.0 67 49.3
MD05G1255900 Malus domestica HOM05D000327 ORTHO05D000218 6.4e-10 67.0 67 46.3
PSO675G0479 Papaver somniferum HOM05D000327 ORTHO05D000218 6.4e-10 67.0 67 49.3
PSO541G6330 Papaver somniferum HOM05D000327 ORTHO05D000218 8.4e-10 66.6 67 49.3
VMungo0540G1796 Vigna mungo HOM05D000327 ORTHO05D000218 8.4e-10 66.6 63 52.4
Lj6g0022216 Lotus japonicus HOM05D000327 ORTHO05D000218 1.1e-09 66.2 64 53.1
BcaC09g51386 Brassica carinata HOM05D000327 ORTHO05D000218 1.4e-09 65.9 64 51.6
C01p13680 Brassica napus HOM05D000327 ORTHO05D000218 1.4e-09 65.9 64 51.6
BolC1t01342H Brassica oleracea HOM05D000327 ORTHO05D000218 1.4e-09 65.9 64 51.6
CAN.G1202.9 Capsicum annuum HOM05D000327 ORTHO05D000218 1.4e-09 65.9 68 52.9
CsaV3_1G046510 Cucumis sativus L. HOM05D000327 ORTHO05D000218 1.9e-09 65.5 67 49.3
PGR083G0861 Punica granatum HOM05D000327 ORTHO05D000218 1.9e-09 65.5 67 46.3
SGA_v2.0_scaffold535G52769 Striga asiatica HOM05D000327 ORTHO05D000218 1.9e-09 65.5 67 47.8
AL7G34370 Arabidopsis lyrata HOM05D000327 ORTHO05D000218 2.4e-09 65.1 62 50.0
AT4G19670 Arabidopsis thaliana HOM05D000327 ORTHO05D000218 2.4e-09 65.1 70 47.1
BcaC06g30628 Brassica carinata HOM05D000327 ORTHO05D000218 2.4e-09 65.1 62 51.6
BcaNung01758 Brassica carinata HOM05D000327 ORTHO05D000218 3.2e-09 64.7 62 51.6
Nitab4.5_0001876g0070 Nicotiana tabacum HOM05D000327 ORTHO05D000218 3.2e-09 64.7 68 51.5
A01p11590 Brassica napus HOM05D000327 ORTHO05D000218 4.2e-09 64.3 64 50.0
Nitab4.5_0003027g0050 Nicotiana tabacum HOM05D000327 ORTHO05D000218 4.2e-09 64.3 68 50.0
Potri.012G119000 Populus trichocarpa HOM05D000327 ORTHO05D000218 4.2e-09 64.3 65 47.7
BraA01t01107Z Brassica rapa HOM05D000327 ORTHO05D000218 5.4e-09 63.9 64 50.0
MELO3C021806.2 Cucumis melo HOM05D000327 ORTHO05D000218 5.4e-09 63.9 67 49.3
Manes.16G047576 Manihot esculenta HOM05D000327 ORTHO05D000218 5.4e-09 63.9 65 47.7
CANSAT35G0541 Cannabis sativa HOM05D000327 ORTHO05D000218 7.1e-09 63.5 66 48.5
CARHR226490 Cardamine hirsuta HOM05D000327 ORTHO05D000218 7.1e-09 63.5 64 48.4
Potri.015G117600 Populus trichocarpa HOM05D000327 ORTHO05D000218 7.1e-09 63.5 65 49.2
Sed0016472 Sechium edule HOM05D000327 ORTHO05D000218 7.1e-09 63.5 67 49.3
Sc21g0004370 Simmondsia chinensis HOM05D000327 ORTHO05D000218 7.1e-09 63.5 67 47.8
PGSC0003DMG400021214 Solanum tuberosum HOM05D000327 ORTHO05D000218 7.1e-09 63.5 68 50.0
Aqoxy1G01492 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 9.3e-09 63.2 67 41.8
Eucgr.D01052 Eucalyptus grandis HOM05D000327 ORTHO05D000218 9.3e-09 63.2 67 44.8
Sabra15G0135800 Salix brachista HOM05D000327 ORTHO05D000218 9.3e-09 63.2 65 49.2
DCAR_004315 Daucus carota HOM05D000327 ORTHO05D000218 1.6e-08 62.4 62 50.0
Lsat_1_v5_gn_8_117801 Lactuca sativa HOM05D000327 ORTHO05D000218 1.6e-08 62.4 70 47.1
Solyc02g069230.3 Solanum lycopersicum HOM05D000327 ORTHO05D000218 2.1e-08 62.0 68 48.5
Sopen02g018390 Solanum pennellii HOM05D000327 ORTHO05D000218 2.1e-08 62.0 68 48.5
Hma1.2p1_0092F.1_g046800 Hydrangea macrophylla HOM05D000327 ORTHO05D000218 2.7e-08 61.6 67 49.3
Carub.0007s2148 Capsella rubella HOM05D000327 ORTHO05D000218 3.5e-08 61.2 62 48.4
SEGI_07561 Sequoiadendron giganteum HOM05D000327 ORTHO05D000218 6.0e-08 60.5 66 43.9
Peaxi162Scf00623g00313 Petunia axillaris HOM05D000327 ORTHO05D000218 7.9e-08 60.1 68 48.5
Lsat_1_v5_gn_2_63540 Lactuca sativa HOM05D000327 ORTHO05D000218 1.0e-07 59.7 61 44.3
TWI38G1261 Tripterygium wilfordii HOM05D000327 ORTHO05D000218 1.8e-07 58.9 65 44.6
A03p51960 Brassica napus HOM05D000327 ORTHO05D000218 6.7e-07 57.0 61 44.3
EL10Ac7g17231 Beta vulgaris HOM05D000327 ORTHO05D000218 8.7e-07 56.6 67 44.8
Zm00001eb032750 Zea mays HOM05D000327 ORTHO05D000218 1.1e-06 56.2 54 50.0
BraA03t14283Z Brassica rapa HOM05D000327 ORTHO05D000218 1.5e-06 55.8 62 45.2
MBI18_g04365_MAGBIO Magnolia biondii HOM05D000327 ORTHO05D000218 3.3e-06 54.7 64 43.8
Os12g0631200 Oryza sativa ssp. japonica HOM05D000327 ORTHO05D000218 3.3e-06 54.7 54 48.1


User provided reference genes

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