Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 1.9e-214 748.8 366 100.0
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 2.3e-175 619.0 330 88.8
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 4.4e-166 588.2 314 87.3
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 3.9e-162 575.1 337 81.3
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 6.8e-159 564.3 342 78.7
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 2.6e-158 562.4 336 81.0
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 3.4e-158 562.0 338 78.7
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 5.8e-158 561.2 336 79.8
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 5.8e-158 561.2 320 82.2
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 2.2e-157 559.3 331 80.1
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 8.3e-157 557.4 338 77.5
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 4.1e-156 555.1 316 82.3
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.2e-155 553.5 336 78.9
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 1.6e-155 553.1 342 77.5
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 2.0e-155 552.7 342 77.5
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 2.7e-155 552.4 337 76.6
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 3.5e-155 552.0 346 76.6
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 3.5e-155 552.0 332 78.0
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 6.0e-155 551.2 334 77.5
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 7.8e-155 550.8 316 82.0
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 3.0e-154 548.9 312 81.4
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 6.6e-154 547.7 331 77.9
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.6e-154 547.4 339 76.7
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.5e-153 546.6 331 78.2
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.9e-153 546.2 328 79.6
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.9e-153 546.2 331 77.3
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.9e-153 546.2 339 76.7
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.5e-153 545.8 331 77.9
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.3e-153 545.4 331 77.9
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 7.3e-153 544.3 338 78.7
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 7.3e-153 544.3 343 75.5
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 9.5e-153 543.9 329 77.5
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 1.2e-152 543.5 340 74.7
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.1e-152 542.7 310 82.3
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 6.2e-152 541.2 337 76.9
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 8.1e-152 540.8 346 76.0
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.1e-151 540.4 331 77.6
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 3.1e-151 538.9 344 77.9
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 4.0e-151 538.5 340 73.5
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.2e-150 537.0 325 78.5
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.5e-150 536.6 338 75.7
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 1.5e-150 536.6 340 73.2
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 2.6e-150 535.8 334 76.0
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 5.8e-150 534.6 338 75.4
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 2.2e-149 532.7 321 77.3
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 2.2e-149 532.7 333 76.3
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 1.4e-148 530.0 338 73.7
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.4e-148 530.0 339 74.3
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 5.4e-148 528.1 333 75.4
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 1.6e-147 526.6 340 73.8
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 2.1e-147 526.2 333 75.4
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 3.5e-147 525.4 331 76.1
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.0e-146 523.9 338 72.5
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 1.0e-146 523.9 342 72.5
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 8.6e-146 520.8 331 74.0
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 8.6e-146 520.8 339 71.7
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.1e-145 520.4 337 71.8
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.1e-145 520.4 331 74.0
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.5e-145 520.0 337 73.3
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 1.5e-145 520.0 308 77.9
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.5e-145 520.0 308 77.9
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.9e-145 519.6 319 76.8
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 4.3e-145 518.5 340 72.1
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 5.6e-145 518.1 332 74.7
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 7.3e-145 517.7 343 72.0
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 9.5e-145 517.3 340 71.2
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 2.8e-144 515.8 341 71.0
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 2.8e-144 515.8 341 71.0
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.8e-144 515.8 340 72.1
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 3.6e-144 515.4 341 71.0
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.6e-144 515.4 331 74.9
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 6.2e-144 514.6 344 72.1
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 8.1e-144 514.2 336 71.4
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.1e-143 513.8 340 71.5
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 1.8e-143 513.1 340 71.2
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 2.3e-143 512.7 341 71.8
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 3.1e-143 512.3 351 71.2
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 3.1e-143 512.3 341 70.7
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 3.1e-143 512.3 341 70.7
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 8.9e-143 510.8 344 73.3
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.0e-142 509.6 344 73.5
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 2.6e-142 509.2 340 74.1
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.4e-142 508.8 367 67.6
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 9.9e-142 507.3 336 70.2
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.4e-140 503.4 320 72.8
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 1.6e-139 500.0 313 77.0
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 2.7e-139 499.2 317 72.9
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 3.9e-138 495.4 340 72.4
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.3e-137 492.3 383 64.5
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 9.6e-137 490.7 336 70.8
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.2e-136 490.3 337 69.1
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 3.6e-136 488.8 308 73.7
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.7e-136 488.4 339 70.8
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 8.1e-136 487.6 301 77.4
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.1e-135 487.3 347 68.6
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.1e-135 487.3 361 67.6
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 2.4e-135 486.1 339 68.4
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 8.9e-135 484.2 321 73.2
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 2.0e-134 483.0 286 79.0
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 2.0e-134 483.0 336 70.5
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 9.9e-134 480.7 349 68.5
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 4.9e-133 478.4 322 72.7
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 5.4e-132 474.9 350 66.0
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 2.7e-131 472.6 307 71.3
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 6.0e-131 471.5 321 71.0
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 3.0e-130 469.2 308 69.2
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.3e-128 463.8 310 72.6
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.8e-128 462.6 330 66.4
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.0e-126 456.4 307 68.1
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.0e-126 456.4 318 69.8
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 5.8e-126 454.9 331 68.3
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 1.3e-125 453.8 266 79.7
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.5e-123 445.7 303 67.0
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 1.9e-121 439.9 263 79.8
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 5.6e-121 438.3 308 66.6
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 1.6e-120 436.8 329 66.0
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 3.6e-120 435.6 247 83.8
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 8.1e-120 434.5 283 72.4
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 9.0e-119 431.0 332 62.0
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.6e-115 420.2 325 62.5
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 7.9e-115 417.9 276 72.1
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 3.1e-111 406.0 312 62.8
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 9.0e-111 404.4 313 63.3
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 2.9e-109 399.4 287 67.9
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 4.1e-103 379.0 403 49.9
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 6.3e-96 355.1 328 57.3
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.5e-94 350.5 222 73.9
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.4e-92 344.0 247 66.8
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.7e-91 339.7 247 64.8
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.9e-90 335.9 226 66.4
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.4e-84 317.4 303 52.1
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.2e-84 316.2 229 65.1
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 2.9e-77 293.1 268 56.3
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 8.2e-72 275.0 291 50.5
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 4.1e-71 272.7 169 75.1
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 6.5e-69 265.4 175 73.7
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 3.5e-62 243.0 143 76.9
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 7.5e-57 225.3 130 78.5
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.4e-55 221.1 177 63.8
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 3.7e-48 196.4 124 73.4
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 2.1e-35 154.1 90 80.0
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 2.4e-31 140.6 171 48.5
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 4.9e-24 116.3 75 62.7
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 7.1e-23 112.5 64 79.7
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 2.1e-22 110.9 77 71.4
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.5e-20 104.8 66 71.2
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 4.7e-19 99.8 80 60.0
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 3.8e-16 90.1 80 58.8
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 4.9e-16 89.7 55 72.7
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 9.3e-15 85.5 81 56.8
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 1.5e-09 68.2 196 26.5
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 2.6e-09 67.4 95 35.8
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.7e-08 64.7 41 65.9
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 2.2e-08 64.3 170 27.6
Sc22g0004540 Simmondsia chinensis HOM05D002024 ORTHO05D004352 1.9e-07 61.2 212 24.5
BraA04t18006Z Brassica rapa HOM05D002024 ORTHO05D007288 4.2e-07 60.1 157 29.3
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 4.2e-07 60.1 176 29.0
Pp3c4_22010 Physcomitrium patens HOM05D002024 ORTHO05D004352 5.4e-07 59.7 248 22.6
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 9.3e-07 58.9 200 28.5
BcaB06g28594 Brassica carinata HOM05D002024 ORTHO05D007288 1.2e-06 58.5 154 29.9
ATR0794G134 Amborella trichopoda HOM05D002024 ORTHO05D007288 1.6e-06 58.2 157 29.3
BcaC02g07923 Brassica carinata HOM05D002024 ORTHO05D007288 1.6e-06 58.2 154 29.9
C04p61920 Brassica napus HOM05D002024 ORTHO05D007288 1.6e-06 58.2 154 29.9
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 1.6e-06 58.2 155 27.1
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 2.1e-06 57.8 76 46.1
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 2.1e-06 57.8 155 27.1
COL.COLO4_28619 Corchorus olitorius HOM05D002024 ORTHO05D004352 2.7e-06 57.4 152 25.7
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 2.7e-06 57.4 154 27.3
Actinidia03934 Actinidia chinensis HOM05D002024 ORTHO05D004352 3.5e-06 57.0 156 24.4
BolC4t27671H Brassica oleracea HOM05D002024 ORTHO05D007288 3.5e-06 57.0 154 29.9
HanXRQChr07g0197171 Helianthus annuus HOM05D002024 ORTHO05D004352 3.5e-06 57.0 156 25.6
THA.LOC104821442 Tarenaya hassleriana HOM05D002024 ORTHO05D004352 3.5e-06 57.0 204 25.0
TWI60G0427 Tripterygium wilfordii HOM05D002024 ORTHO05D004352 4.6e-06 56.6 156 26.9
Duzib106G0860 Durio zibethinus HOM05D002024 ORTHO05D004352 6.0e-06 56.2 154 26.6
AT2G32415 Arabidopsis thaliana HOM05D002024 ORTHO05D007288 7.9e-06 55.8 154 28.6
AUR62035829 Chenopodium quinoa HOM05D002024 ORTHO05D004352 7.9e-06 55.8 148 24.3
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 7.9e-06 55.8 153 26.8
Gohir.A13G164100 Gossypium hirsutum HOM05D002024 ORTHO05D004352 7.9e-06 55.8 152 27.0
Medtr7g086370 Medicago truncatula HOM05D002024 ORTHO05D004352 7.9e-06 55.8 225 24.9
Thecc.05G244100 Theobroma cacao HOM05D002024 ORTHO05D004352 7.9e-06 55.8 154 26.0


User provided reference genes

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