Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 6.1e-163 577.4 288 100.0
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 2.2e-157 558.9 288 95.8
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 3.7e-144 515.0 287 88.5
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 3.2e-135 485.3 290 83.4
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 4.3e-132 474.9 287 81.5
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 7.5e-129 464.2 288 80.6
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 8.3e-128 460.7 289 80.3
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 1.1e-127 460.3 287 78.4
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 6.0e-126 454.5 291 78.0
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 1.3e-125 453.4 285 79.3
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 3.0e-125 452.2 285 78.9
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 3.9e-125 451.8 286 79.0
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 4.3e-124 448.4 285 78.2
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 2.8e-123 445.7 283 78.1
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 1.4e-122 443.4 292 76.4
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 1.4e-122 443.4 290 77.6
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 3.1e-122 442.2 297 75.1
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.5e-121 439.9 309 73.5
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 1.7e-120 436.4 297 76.1
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 4.9e-120 434.9 273 78.8
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 2.4e-119 432.6 296 74.7
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 5.4e-119 431.4 270 78.9
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 7.1e-119 431.0 295 74.2
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 9.2e-119 430.6 290 75.9
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 7.8e-118 427.6 290 75.2
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 1.7e-117 426.4 297 72.7
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 1.7e-117 426.4 298 72.1
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 3.9e-117 425.2 295 73.6
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 3.9e-117 425.2 299 74.2
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 8.6e-117 424.1 307 72.0
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 2.5e-116 422.5 292 74.3
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 3.3e-116 422.2 296 73.3
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 7.3e-116 421.0 277 76.2
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 2.8e-115 419.1 296 72.0
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 3.6e-115 418.7 298 72.1
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 6.2e-115 417.9 299 70.2
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 8.1e-115 417.5 295 71.9
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 1.1e-114 417.2 299 69.6
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 1.1e-114 417.2 296 72.3
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 2.4e-114 416.0 296 71.6
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 3.1e-114 415.6 300 71.7
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 4.0e-114 415.2 301 71.4
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 4.0e-114 415.2 296 71.6
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 6.8e-114 414.5 301 71.1
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 6.8e-114 414.5 299 71.2
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 8.9e-114 414.1 233 89.3
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 1.2e-113 413.7 297 70.4
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 2.0e-113 412.9 297 69.7
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 4.4e-113 411.8 300 71.0
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 7.6e-113 411.0 296 71.6
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 2.2e-112 409.5 302 70.9
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 2.9e-112 409.1 300 70.7
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 1.1e-111 407.1 301 69.1
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 1.4e-111 406.8 300 70.7
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 2.4e-111 406.0 300 70.3
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 7.1e-111 404.4 297 70.7
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 9.3e-111 404.1 302 69.5
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 1.2e-110 403.7 300 70.3
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 1.2e-110 403.7 300 69.3
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 2.1e-110 402.9 303 68.0
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 2.1e-110 402.9 300 69.7
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.1e-110 402.9 315 67.3
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.7e-110 402.5 315 67.3
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 3.5e-110 402.1 296 69.6
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 1.5e-108 396.7 295 67.8
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 1.5e-108 396.7 275 73.5
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 3.3e-108 395.6 294 68.7
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 3.3e-108 395.6 266 75.2
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 3.3e-108 395.6 296 68.2
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 2.1e-107 392.9 295 67.1
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 3.6e-107 392.1 295 67.8
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 6.2e-107 391.3 294 67.0
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 1.8e-106 389.8 295 67.5
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 5.3e-106 388.3 333 63.1
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 2.0e-105 386.3 294 66.3
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 4.4e-105 385.2 296 66.9
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 5.8e-105 384.8 296 67.2
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 2.2e-104 382.9 299 67.2
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 1.9e-103 379.8 308 65.3
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 2.4e-103 379.4 300 66.3
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 7.1e-103 377.9 304 64.1
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 1.3e-101 373.6 276 67.8
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 5.1e-101 371.7 255 74.1
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 7.4e-100 367.9 283 62.9
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 7.6e-97 357.8 296 64.9
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 6.4e-96 354.8 236 77.1
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 3.2e-95 352.4 296 59.5
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 3.0e-93 345.9 247 72.1
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 4.3e-92 342.0 252 71.0
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.6e-91 340.1 250 69.6
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 3.7e-91 339.0 243 70.4
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 4.8e-91 338.6 293 62.8
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 2.7e-86 322.8 203 77.3
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 1.3e-85 320.5 301 53.5
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 1.5e-84 317.0 238 69.7
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 1.9e-84 316.6 323 56.7
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 3.7e-83 312.4 203 76.8
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 6.3e-83 311.6 296 51.7
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.3e-80 303.9 230 70.4
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 1.9e-79 300.1 207 75.4
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 2.2e-75 286.6 221 67.0
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 6.9e-74 281.6 250 61.2
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 6.9e-74 281.6 217 68.2
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 9.0e-74 281.2 212 70.3
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 1.0e-69 267.7 149 83.9
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 1.1e-68 264.2 252 57.5
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 2.6e-68 263.1 289 52.6
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 7.4e-68 261.5 383 45.7
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 2.4e-66 256.5 228 62.3
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 2.0e-65 253.4 315 44.1
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.0e-56 224.6 183 63.9
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 2.9e-56 223.0 181 68.0
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 2.0e-49 200.3 177 60.5
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 7.2e-47 191.8 131 72.5
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 1.0e-45 188.0 111 77.5
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 1.5e-44 184.1 122 71.3
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 5.7e-44 182.2 95 92.6
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 5.4e-42 175.6 163 57.7
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 7.0e-42 175.3 202 54.0
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 3.2e-39 166.4 285 36.1
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 9.5e-39 164.9 116 75.0
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 2.1e-38 163.7 96 77.1
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 2.0e-33 147.1 152 52.6
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 6.6e-32 142.1 82 79.3
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 8.0e-30 135.2 334 29.6
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 1.7e-27 127.5 278 31.7
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 1.7e-24 117.5 70 82.9
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 1.1e-23 114.8 157 43.9
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 4.7e-22 109.4 138 39.9
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 6.8e-21 105.5 92 59.8
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.6e-20 103.6 83 65.1
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 5.4e-18 95.9 80 62.5
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 1.2e-14 84.7 92 53.3
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.4e-10 71.2 83 50.6
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 2.4e-10 70.5 31 87.1
HanXRQChr09g0274411 Helianthus annuus HOM05D005614 ORTHO05D006759 6.0e-09 65.9 33 97.0
SalBow3G3353 Salvia bowleyana HOM05D005614 ORTHO05D006759 4.3e-07 59.7 65 52.3


User provided reference genes

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