Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr16g0505891 Helianthus annuus HOM05D002561 ORTHO05D006466 3.1e-72 275.0 136 100.0
ECA240G2497 Erigeron canadensis HOM05D002561 ORTHO05D006466 3.0e-11 72.4 64 67.2
Lsat_1_v5_gn_4_64440 Lactuca sativa HOM05D002561 ORTHO05D006466 3.0e-11 72.4 64 67.2
HanXRQChr05g0140561 Helianthus annuus HOM05D002561 ORTHO05D006466 6.7e-11 71.2 64 67.2
Thecc.02G185400 Theobroma cacao HOM05D002561 ORTHO05D006466 1.1e-10 70.5 64 65.6
Migut.D00238 Erythranthe guttata HOM05D002561 ORTHO05D006466 1.5e-10 70.1 64 64.1
PGR142G4043 Punica granatum HOM05D002561 ORTHO05D006466 1.5e-10 70.1 64 67.2
CAN.G209.6 Capsicum annuum HOM05D002561 ORTHO05D006466 2.0e-10 69.7 64 62.5
MELO3C018869.2 Cucumis melo HOM05D002561 ORTHO05D006466 2.0e-10 69.7 64 65.6
Nitab4.5_0000621g0150 Nicotiana tabacum HOM05D002561 ORTHO05D006466 2.0e-10 69.7 64 65.6
Nitab4.5_0004546g0040 Nicotiana tabacum HOM05D002561 ORTHO05D006466 2.0e-10 69.7 64 65.6
Cc05_g07670 Coffea canephora HOM05D002561 ORTHO05D006466 3.3e-10 68.9 64 65.6
Dinv00035 Davidia involucrata HOM05D002561 ORTHO05D006466 3.3e-10 68.9 64 65.6
Dinv07536 Davidia involucrata HOM05D002561 ORTHO05D006466 3.3e-10 68.9 64 65.6
Dinv10164 Davidia involucrata HOM05D002561 ORTHO05D006466 3.3e-10 68.9 64 65.6
Gohir.D02G177700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 3.3e-10 68.9 64 65.6
Gorai.005G199500 Gossypium raimondii HOM05D002561 ORTHO05D006466 3.3e-10 68.9 64 65.6
MSTRG.15131 Avicennia marina HOM05D002561 ORTHO05D006466 4.4e-10 68.6 64 64.1
Solyc07g053660.3 Solanum lycopersicum HOM05D002561 ORTHO05D006466 4.4e-10 68.6 64 64.1
Sopen07g027630 Solanum pennellii HOM05D002561 ORTHO05D006466 4.4e-10 68.6 64 64.1
CsaV3_7G003080 Cucumis sativus L. HOM05D002561 ORTHO05D006466 5.7e-10 68.2 64 65.6
Gohir.A03G154700 Gossypium hirsutum HOM05D002561 ORTHO05D006466 5.7e-10 68.2 63 66.7
Sed0023046 Sechium edule HOM05D002561 ORTHO05D006466 5.7e-10 68.2 64 65.6
COL.COLO4_28034 Corchorus olitorius HOM05D002561 ORTHO05D006466 7.4e-10 67.8 64 64.1
FvH4_2g10410 Fragaria vesca HOM05D002561 ORTHO05D006466 7.4e-10 67.8 64 64.1
FAN15G2087 Fragaria x ananassa HOM05D002561 ORTHO05D006466 7.4e-10 67.8 64 64.1
FAN20G3107 Fragaria x ananassa HOM05D002561 ORTHO05D006466 7.4e-10 67.8 64 64.1
FAN27G0984 Fragaria x ananassa HOM05D002561 ORTHO05D006466 7.4e-10 67.8 64 64.1
Peaxi162Scf00845g00022 Petunia axillaris HOM05D002561 ORTHO05D006466 9.7e-10 67.4 105 43.8
Prupe.1G573700 Prunus persica HOM05D002561 ORTHO05D006466 9.7e-10 67.4 64 65.6
Prupe.6G177000 Prunus persica HOM05D002561 ORTHO05D006466 9.7e-10 67.4 64 65.6
RcHm_v2.0_Chr6g0267881 Rosa chinensis HOM05D002561 ORTHO05D006466 9.7e-10 67.4 64 65.6
BcaC06g32621 Brassica carinata HOM05D002561 ORTHO05D006466 1.3e-09 67.0 64 60.9
A03p58100 Brassica napus HOM05D002561 ORTHO05D006466 1.3e-09 67.0 64 60.9
C07p56220 Brassica napus HOM05D002561 ORTHO05D006466 1.3e-09 67.0 64 60.9
BolC7t46099H Brassica oleracea HOM05D002561 ORTHO05D006466 1.3e-09 67.0 64 60.9
BraA03t14876Z Brassica rapa HOM05D002561 ORTHO05D006466 1.3e-09 67.0 64 60.9
Sc24g0000990 Simmondsia chinensis HOM05D002561 ORTHO05D006466 1.3e-09 67.0 64 64.1
PGSC0003DMG401009395 Solanum tuberosum HOM05D002561 ORTHO05D006466 1.3e-09 67.0 64 62.5
CSS0024007 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D006466 1.7e-09 66.6 64 64.1
Eucgr.K01052 Eucalyptus grandis HOM05D002561 ORTHO05D006466 1.7e-09 66.6 64 65.6
AT4G28450 Arabidopsis thaliana HOM05D002561 ORTHO05D006466 2.2e-09 66.2 64 62.5
AUR62008772 Chenopodium quinoa HOM05D002561 ORTHO05D006466 2.2e-09 66.2 64 62.5
FAN07G0711 Fragaria x ananassa HOM05D002561 ORTHO05D006466 2.2e-09 66.2 60 65.0
Lj8C108T5 Lonicera japonica HOM05D002561 ORTHO05D006466 2.2e-09 66.2 64 64.1
Potri.017G014700 Populus trichocarpa HOM05D002561 ORTHO05D006466 2.2e-09 66.2 64 64.1
Sabra17G0011900 Salix brachista HOM05D002561 ORTHO05D006466 2.2e-09 66.2 64 64.1
GSVIVG01020601001 Vitis vinifera HOM05D002561 ORTHO05D006466 2.2e-09 66.2 64 64.1
Atru.chr6.2875 Acer truncatum HOM05D002561 ORTHO05D006466 2.8e-09 65.9 64 62.5
Aa31LG2G21970 Aethionema arabicum HOM05D002561 ORTHO05D006466 2.8e-09 65.9 64 62.5
AL7G24110 Arabidopsis lyrata HOM05D002561 ORTHO05D006466 2.8e-09 65.9 64 62.5
Carub.0007s1225 Capsella rubella HOM05D002561 ORTHO05D006466 2.8e-09 65.9 64 62.5
CARHR236220 Cardamine hirsuta HOM05D002561 ORTHO05D006466 2.8e-09 65.9 64 62.5
Manes.13G142500 Manihot esculenta HOM05D002561 ORTHO05D006466 2.8e-09 65.9 64 62.5
Sp7g26430 Schrenkiella parvula HOM05D002561 ORTHO05D006466 2.8e-09 65.9 64 62.5
unitig_85.g27364 Utricularia gibba HOM05D002561 ORTHO05D006466 2.8e-09 65.9 64 59.4
Cfa014656 Carpinus fangiana HOM05D002561 ORTHO05D006466 3.7e-09 65.5 64 62.5
CiPaw.03G181000 Carya illinoinensis HOM05D002561 ORTHO05D006466 3.7e-09 65.5 64 60.9
COL.COLO4_18046 Corchorus olitorius HOM05D002561 ORTHO05D006466 3.7e-09 65.5 63 61.9
FvH4_4g06150 Fragaria vesca HOM05D002561 ORTHO05D006466 3.7e-09 65.5 59 66.1
Hund07915 Selenicereus undatus HOM05D002561 ORTHO05D006466 3.7e-09 65.5 64 64.1
THA.LOC104804051 Tarenaya hassleriana HOM05D002561 ORTHO05D006466 3.7e-09 65.5 64 60.9
vmacro12361 Vaccinium macrocarpon HOM05D002561 ORTHO05D006466 3.7e-09 65.5 64 62.5
DCAR_013032 Daucus carota HOM05D002561 ORTHO05D006466 4.8e-09 65.1 64 60.9
Sc04g0004740 Simmondsia chinensis HOM05D002561 ORTHO05D006466 4.8e-09 65.1 64 62.5
Sc04g0004780 Simmondsia chinensis HOM05D002561 ORTHO05D006466 4.8e-09 65.1 64 62.5
Ciclev10015209m.g Citrus clementina HOM05D002561 ORTHO05D006466 6.3e-09 64.7 64 62.5
Nn1g06426 Nelumbo nucifera HOM05D002561 ORTHO05D006466 6.3e-09 64.7 64 62.5
TAR624G0407 Trochodendron aralioides HOM05D002561 ORTHO05D006466 6.3e-09 64.7 64 62.5
TAR626G1404 Trochodendron aralioides HOM05D002561 ORTHO05D006466 6.3e-09 64.7 64 62.5
Actinidia11004 Actinidia chinensis HOM05D002561 ORTHO05D006466 8.2e-09 64.3 64 62.5
Actinidia11101 Actinidia chinensis HOM05D002561 ORTHO05D006466 8.2e-09 64.3 64 62.5
CANSAT64G1696 Cannabis sativa HOM05D002561 ORTHO05D006466 8.2e-09 64.3 64 60.9
Duzib052G0349 Durio zibethinus HOM05D002561 ORTHO05D006466 8.2e-09 64.3 64 62.5
Sabra07G0110300 Salix brachista HOM05D002292 ORTHO05D003256 1.1e-08 63.9 64 62.5
Sc04g0004800 Simmondsia chinensis HOM05D002561 ORTHO05D006466 1.1e-08 63.9 60 65.0
MD15G1410700 Malus domestica HOM05D002561 ORTHO05D006466 1.4e-08 63.5 64 60.9
Potri.007G137300 Populus trichocarpa HOM05D002561 ORTHO05D006466 1.4e-08 63.5 64 60.9
MD08G1220200 Malus domestica HOM05D002561 ORTHO05D006466 1.8e-08 63.2 64 59.4
Thhalv10025176m.g Eutrema salsugineum HOM05D002561 ORTHO05D006466 2.4e-08 62.8 64 59.4
Glyma.02G251700 Glycine max HOM05D002561 ORTHO05D006466 2.4e-08 62.8 64 59.4
Glyma.14G065100 Glycine max HOM05D002561 ORTHO05D006466 2.4e-08 62.8 64 59.4
QL08p040074 Quercus lobata HOM05D002561 ORTHO05D006466 2.4e-08 62.8 64 62.5
Lalb_Chr25g0280621 Lupinus albus HOM05D002561 ORTHO05D006466 3.1e-08 62.4 64 57.8
Cpa.g.sc83.89 Carica papaya HOM05D002561 ORTHO05D006466 4.1e-08 62.0 64 57.8
Lj3g0012051 Lotus japonicus HOM05D002561 ORTHO05D006466 4.1e-08 62.0 64 56.2
MBI07_g29117_MAGBIO Magnolia biondii HOM05D002561 ORTHO05D006466 5.3e-08 61.6 68 60.3
Phvul.006G037700 Phaseolus vulgaris HOM05D002561 ORTHO05D006466 7.0e-08 61.2 64 57.8
ATR0665G052 Amborella trichopoda HOM05D002561 ORTHO05D006466 9.1e-08 60.8 64 59.4
Medtr1g022960 Medicago truncatula HOM05D002561 ORTHO05D006466 9.1e-08 60.8 64 57.8
arahy.Tifrunner.gnm1.ann1.TSZ6TX Arachis hypogaea HOM05D002561 ORTHO05D006466 1.2e-07 60.5 64 59.4
Ca_13381_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 1.5e-07 60.1 64 54.7
Ca_30047_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 1.5e-07 60.1 64 54.7
ClCG02G002370 Citrullus lanatus HOM05D002561 ORTHO05D006466 1.5e-07 60.1 63 60.3
Mapoly0143s0027 Marchantia polymorpha HOM05D002561 ORTHO05D006466 2.6e-07 59.3 60 56.7
TPR.G22970 Trifolium pratense HOM05D002561 ORTHO05D006466 2.6e-07 59.3 64 54.7
Psat6g009760 Pisum sativum HOM05D002561 ORTHO05D006466 3.4e-07 58.9 64 56.2
HPP92_000278 Vanilla planifolia HOM05D002561 ORTHO05D006466 4.5e-07 58.5 64 56.2
PSO210G7210 Papaver somniferum HOM05D002561 ORTHO05D006466 7.7e-07 57.8 64 56.2
EL10Ac9g20811 Beta vulgaris HOM05D002561 ORTHO05D006466 1.3e-06 57.0 64 56.2
Ah.03g138410 Amaranthus hybridus HOM05D002561 ORTHO05D006466 1.7e-06 56.6 64 51.6
CDE03G0236 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 6.5e-06 54.7 64 51.6


User provided reference genes

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