Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 0.0e+00 2217.2 1118 100.0
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 0.0e+00 1320.1 1394 55.2
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 0.0e+00 1209.1 1234 56.8
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 1.8e-295 1019.6 1183 51.1
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 2.9e-293 1012.3 1161 50.9
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 1.1e-292 1010.4 1197 49.3
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 4.6e-291 1005.0 1184 50.3
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 9.9e-286 987.3 1191 49.9
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 4.3e-281 971.8 1176 49.3
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 5.6e-281 971.5 1171 48.1
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 4.0e-279 965.3 1204 48.3
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 3.8e-277 958.7 1174 49.3
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 1.1e-276 957.2 1166 48.7
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 7.9e-275 951.0 1178 47.0
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 7.9e-275 951.0 1250 47.0
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 3.3e-273 945.7 1170 48.5
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 1.1e-271 940.6 1243 47.5
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 4.1e-271 938.7 1195 47.5
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 7.6e-270 934.5 1186 47.7
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 2.7e-267 926.0 1209 47.1
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 4.6e-267 925.2 1180 46.1
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 1.0e-266 924.1 1188 48.7
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 5.1e-266 921.8 1183 47.2
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 3.1e-263 912.5 1213 45.9
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 2.7e-259 899.4 1186 46.1
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 3.6e-259 899.0 1209 44.8
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 3.6e-259 899.0 1175 46.1
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 6.3e-256 888.3 1029 49.3
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 2.4e-255 886.3 1180 45.1
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 2.0e-254 883.2 1173 45.4
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 4.5e-254 882.1 1192 45.0
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 7.7e-254 881.3 1190 45.2
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 7.7e-254 881.3 1192 45.2
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 2.9e-253 879.4 1175 45.8
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 3.8e-253 879.0 1176 45.6
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 3.8e-253 879.0 1247 44.1
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.9e-252 876.7 1187 45.1
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 4.2e-252 875.5 1205 44.1
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 9.4e-252 874.4 1062 49.9
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 4.7e-251 872.1 1146 46.5
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 6.7e-250 868.2 1205 43.7
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.4e-249 865.5 1234 44.0
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 2.2e-248 863.2 1233 44.1
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 1.1e-247 860.9 1205 43.9
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.8e-247 860.1 1001 50.1
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 2.4e-247 859.8 1186 44.8
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 1.2e-246 857.4 1197 44.9
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 2.6e-246 856.3 1002 49.8
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.5e-244 850.5 1211 43.4
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 2.7e-243 846.3 1243 43.1
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 2.3e-242 843.2 1203 43.4
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 4.0e-242 842.4 1215 43.3
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 4.8e-240 835.5 902 52.0
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 4.8e-240 835.5 1264 42.5
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 1.2e-238 830.9 1202 42.7
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 7.7e-238 828.2 1165 43.5
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.7e-237 827.0 1203 43.0
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 2.2e-237 826.6 1213 42.9
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 3.2e-236 822.8 1135 45.9
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.6e-235 820.5 1279 41.8
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 4.7e-235 818.9 1253 42.0
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 6.1e-235 818.5 1198 42.0
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 3.0e-234 816.2 1023 46.5
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 3.0e-234 816.2 1270 41.4
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 1.5e-233 813.9 1002 47.4
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 4.4e-233 812.4 1186 43.4
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 1.7e-232 810.4 1229 42.0
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 2.2e-232 810.1 1160 42.9
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.8e-232 809.7 1035 46.1
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 3.7e-232 809.3 1207 41.2
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 9.1e-231 804.7 1181 42.7
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 3.5e-230 802.7 1212 41.6
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 2.5e-228 796.6 977 47.6
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 3.6e-227 792.7 1231 41.5
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 6.1e-227 792.0 1165 42.7
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 1.2e-225 787.7 1165 42.5
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 5.4e-223 778.9 1086 44.4
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 7.0e-223 778.5 1090 44.4
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 2.3e-221 773.5 1040 45.0
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 5.0e-221 772.3 1198 41.5
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 5.0e-221 772.3 1198 41.5
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.2e-219 767.7 643 61.0
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 2.1e-219 766.9 1167 41.5
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 6.8e-218 761.9 1266 40.7
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 5.7e-217 758.8 1009 45.3
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 2.2e-216 756.9 995 46.0
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 2.9e-216 756.5 1032 45.3
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 3.7e-216 756.1 1234 40.5
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 4.1e-215 752.7 1173 42.2
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 1.6e-214 750.7 1043 44.1
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 1.2e-209 734.6 1249 38.5
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 4.4e-209 732.6 1098 42.2
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 6.0e-206 722.2 702 54.4
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 4.4e-201 706.1 992 43.8
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 1.1e-199 701.4 1186 38.9
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 1.9e-199 700.7 969 45.3
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 6.0e-198 695.7 948 44.9
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 1.4e-194 684.5 631 58.2
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 2.0e-193 680.6 864 45.8
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 4.3e-180 636.3 1090 39.3
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 1.6e-179 634.4 906 43.7
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.7e-176 624.4 633 51.7
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 7.6e-169 599.0 807 45.1
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 9.3e-167 592.0 1002 38.5
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 1.2e-166 591.7 1145 36.3
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.6e-155 554.7 632 49.2
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 1.7e-147 528.1 735 45.3
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 4.8e-147 526.6 506 56.7
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 6.7e-141 506.1 721 42.7
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.1e-140 505.4 430 60.0
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 8.2e-139 499.2 839 41.2
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 5.0e-120 436.8 644 43.9
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 1.0e-109 402.5 647 38.5
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 5.2e-101 373.6 1052 31.0
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 1.8e-98 365.2 656 36.4
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.8e-98 365.2 342 54.4
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.5e-95 355.5 766 33.9
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 2.2e-91 341.7 314 57.6
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 7.0e-90 336.7 302 57.9
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.1e-86 325.1 294 55.1
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.4e-85 322.4 768 34.6
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 6.4e-83 313.5 952 32.1
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 8.3e-83 313.2 952 32.1
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 1.5e-79 302.4 265 54.7
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 4.8e-62 244.2 351 41.6
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 9.0e-61 240.0 402 35.6
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 8.4e-43 180.3 516 33.9
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 6.5e-35 154.1 834 24.7
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.4e-29 135.6 622 27.5
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 2.7e-25 122.1 250 34.8
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 3.9e-24 118.2 294 26.9
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 4.5e-20 104.8 270 30.7
Ah.11g042510 Amaranthus hybridus HOM05D005064 ORTHO05D006611 4.1e-13 81.6 263 28.9
SHI12870 Sapria himalayana HOM05D005064 ORTHO05D006611 8.5e-11 73.9 120 37.5
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 2.7e-09 68.9 59 52.5


User provided reference genes

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