Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr15g0478241 Helianthus annuus HOM05D003508 ORTHO05D004579 2.7e-94 348.6 171 100.0
HanXRQChr11g0342191 Helianthus annuus HOM05D003508 ORTHO05D004579 2.5e-47 192.6 138 72.5
Lsat_1_v5_gn_2_104600 Lactuca sativa HOM05D003508 ORTHO05D004579 5.6e-47 191.4 138 72.5
ECA238G0717 Erigeron canadensis HOM05D003508 ORTHO05D004579 1.6e-46 189.9 138 71.7
Lsat_1_v5_gn_0_7601 Lactuca sativa HOM05D003508 ORTHO05D004579 3.6e-46 188.7 138 71.7
CiPaw.13G040400 Carya illinoinensis HOM05D003508 ORTHO05D004579 4.4e-44 181.8 143 65.7
CSS0009164 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 1.3e-43 180.3 138 68.1
CSS0049709 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 1.7e-43 179.9 138 68.1
CANSAT56G3087 Cannabis sativa HOM05D003508 ORTHO05D004579 1.7e-43 179.9 143 65.7
Psat6g231280 Pisum sativum HOM05D003508 ORTHO05D004579 2.2e-43 179.5 138 67.4
Ciclev10015368m.g Citrus clementina HOM05D003508 ORTHO05D004579 3.8e-43 178.7 138 66.7
Hund14639 Selenicereus undatus HOM05D003508 ORTHO05D004579 4.9e-43 178.3 138 66.7
arahy.Tifrunner.gnm1.ann1.Q6BHJ0 Arachis hypogaea HOM05D003508 ORTHO05D004579 8.4e-43 177.6 138 65.9
arahy.Tifrunner.gnm1.ann1.Y4RU6H Arachis hypogaea HOM05D003508 ORTHO05D004579 8.4e-43 177.6 138 65.9
CiPaw.14G033200 Carya illinoinensis HOM05D003508 ORTHO05D004579 1.1e-42 177.2 143 64.3
Lalb_Chr06g0166461 Lupinus albus HOM05D003508 ORTHO05D004579 1.4e-42 176.8 138 67.4
AL4G36000 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 1.9e-42 176.4 137 66.4
Haze_03293 Corylus avellana HOM05D003508 ORTHO05D004579 1.9e-42 176.4 143 62.9
CAN.G645.2 Capsicum annuum HOM05D003508 ORTHO05D004579 2.4e-42 176.0 138 65.9
Lalb_Chr21g0309221 Lupinus albus HOM05D003508 ORTHO05D004579 3.2e-42 175.6 138 65.9
Medtr1g112230 Medicago truncatula HOM05D003508 ORTHO05D004579 3.2e-42 175.6 138 67.4
Nitab4.5_0001437g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 3.2e-42 175.6 138 65.2
Atru.chr12.1012 Acer truncatum HOM05D003508 ORTHO05D004579 4.2e-42 175.3 138 65.9
BcaB02g08480 Brassica carinata HOM05D003508 ORTHO05D004579 4.2e-42 175.3 137 65.7
BcaC02g09078 Brassica carinata HOM05D003508 ORTHO05D004579 4.2e-42 175.3 137 65.7
C04p38200 Brassica napus HOM05D003508 ORTHO05D004579 4.2e-42 175.3 137 65.7
Ca_25671_v3 Cicer arietinum L. HOM05D003508 ORTHO05D004579 4.2e-42 175.3 138 65.9
Cpa.g.sc183.13 Carica papaya HOM05D003508 ORTHO05D004579 5.4e-42 174.9 143 63.6
Cfa010322 Carpinus fangiana HOM05D003508 ORTHO05D004579 5.4e-42 174.9 143 62.9
Dinv11847 Davidia involucrata HOM05D003508 ORTHO05D004579 5.4e-42 174.9 143 62.9
Thhalv10016888m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 5.4e-42 174.9 137 66.4
MD02G1256300 Malus domestica HOM05D003508 ORTHO05D004579 5.4e-42 174.9 138 64.5
MD07G1064100 Malus domestica HOM05D003508 ORTHO05D004579 5.4e-42 174.9 138 64.5
Prupe.2G078900 Prunus persica HOM05D003508 ORTHO05D004579 5.4e-42 174.9 136 66.9
QL04p046077 Quercus lobata HOM05D003508 ORTHO05D004579 5.4e-42 174.9 138 65.9
Actinidia06698 Actinidia chinensis HOM05D003508 ORTHO05D004579 7.1e-42 174.5 143 63.6
AT2G38700 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 7.1e-42 174.5 137 65.7
A04p05510 Brassica napus HOM05D003508 ORTHO05D004579 7.1e-42 174.5 137 65.7
BraA04t16251Z Brassica rapa HOM05D003508 ORTHO05D004579 7.1e-42 174.5 137 65.7
Thhalv10023484m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 7.1e-42 174.5 137 65.7
Lalb_Chr02g0146341 Lupinus albus HOM05D003508 ORTHO05D004579 7.1e-42 174.5 138 65.9
PGR044G1695 Punica granatum HOM05D003508 ORTHO05D004579 7.1e-42 174.5 138 64.5
Sopen04g004800 Solanum pennellii HOM05D003508 ORTHO05D004579 7.1e-42 174.5 138 63.8
AL5G35290 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 9.3e-42 174.1 137 65.7
Carub.0004s2070 Capsella rubella HOM05D003508 ORTHO05D004579 9.3e-42 174.1 137 66.4
Lj5g0024073 Lotus japonicus HOM05D003508 ORTHO05D004579 9.3e-42 174.1 138 64.5
Potri.008G021100 Populus trichocarpa HOM05D003508 ORTHO05D004579 9.3e-42 174.1 138 65.2
Cc02_g09750 Coffea canephora HOM05D003508 ORTHO05D004579 1.2e-41 173.7 138 64.5
Aqoxy4G02791 Aquilegia oxysepala HOM05D003508 ORTHO05D004579 1.6e-41 173.3 143 62.2
Thhalv10010411m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 1.6e-41 173.3 137 65.0
Hma1.2p1_0356F.1_g134090 Hydrangea macrophylla HOM05D003508 ORTHO05D004579 2.1e-41 172.9 143 62.9
Potri.010G237900 Populus trichocarpa HOM05D003508 ORTHO05D004579 2.1e-41 172.9 138 63.8
VMungo0720G2493 Vigna mungo HOM05D003508 ORTHO05D004579 2.1e-41 172.9 138 64.5
Carub.0005s2084 Capsella rubella HOM05D003508 ORTHO05D004579 2.7e-41 172.6 137 65.0
COL.COLO4_24552 Corchorus olitorius HOM05D003508 ORTHO05D004579 2.7e-41 172.6 137 64.2
Dinv09607 Davidia involucrata HOM05D003508 ORTHO05D004579 2.7e-41 172.6 143 62.9
Nitab4.5_0005622g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 2.7e-41 172.6 138 64.5
CARHR133390 Cardamine hirsuta HOM05D003508 ORTHO05D004579 3.5e-41 172.2 137 64.2
Eucgr.J00991 Eucalyptus grandis HOM05D003508 ORTHO05D004579 3.5e-41 172.2 138 63.8
Nitab4.5_0000691g0130 Nicotiana tabacum HOM05D003508 ORTHO05D004579 3.5e-41 172.2 138 63.8
Nitab4.5_0003927g0020 Nicotiana tabacum HOM05D003508 ORTHO05D004579 3.5e-41 172.2 138 63.8
Phvul.007G021200 Phaseolus vulgaris HOM05D003508 ORTHO05D004579 3.5e-41 172.2 138 63.8
Thecc.10G106000 Theobroma cacao HOM05D003508 ORTHO05D004579 3.5e-41 172.2 137 64.2
BolC4t25395H Brassica oleracea HOM05D003508 ORTHO05D004579 4.6e-41 171.8 137 65.0
Gorai.013G012400 Gossypium raimondii HOM05D003508 ORTHO05D004579 4.6e-41 171.8 136 64.0
Manes.07G087500 Manihot esculenta HOM05D003508 ORTHO05D004579 4.6e-41 171.8 138 63.8
Aa31sc26G40 Aethionema arabicum HOM05D003508 ORTHO05D004579 6.0e-41 171.4 137 65.0
Aa31sc79G100 Aethionema arabicum HOM05D003508 ORTHO05D004579 6.0e-41 171.4 137 65.0
Gohir.A13G010700 Gossypium hirsutum HOM05D003508 ORTHO05D004579 6.0e-41 171.4 136 64.0
Manes.10G058800 Manihot esculenta HOM05D003508 ORTHO05D004579 6.0e-41 171.4 138 63.0
Nn6g34927 Nelumbo nucifera HOM05D003508 ORTHO05D004579 6.0e-41 171.4 138 63.8
Sp4g21060 Schrenkiella parvula HOM05D003508 ORTHO05D004579 6.0e-41 171.4 137 65.7
Sabra10G0186100 Salix brachista HOM05D003508 ORTHO05D004579 7.8e-41 171.0 138 62.3
Sp5g08150 Schrenkiella parvula HOM05D003508 ORTHO05D004579 7.8e-41 171.0 137 65.0
CARHR164170 Cardamine hirsuta HOM05D003508 ORTHO05D004579 1.0e-40 170.6 137 64.2
Lj3A928T54 Lonicera japonica HOM05D003508 ORTHO05D004579 1.0e-40 170.6 138 62.3
A09p47250 Brassica napus HOM05D003508 ORTHO05D004579 1.3e-40 170.2 137 63.5
BolC8t50554H Brassica oleracea HOM05D003508 ORTHO05D004579 1.3e-40 170.2 137 63.5
BraA09t40187Z Brassica rapa HOM05D003508 ORTHO05D004579 1.3e-40 170.2 137 63.5
CDE04G3073 Ceratophyllum demersum HOM05D003508 ORTHO05D004579 1.3e-40 170.2 139 64.0
Peaxi162Scf00519g00710 Petunia axillaris HOM05D003508 ORTHO05D004579 1.3e-40 170.2 138 63.0
AT3G54250 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 1.7e-40 169.9 137 64.2
Hund11567 Selenicereus undatus HOM05D003508 ORTHO05D004579 1.7e-40 169.9 138 63.0
SGA_v2.0_scaffold62G21342 Striga asiatica HOM05D003508 ORTHO05D004579 1.7e-40 169.9 138 60.9
THA.LOC104824218 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 1.7e-40 169.9 137 63.5
unitig_736.g22527 Utricularia gibba HOM05D003508 ORTHO05D004579 1.7e-40 169.9 138 61.6
GSVIVG01011287001 Vitis vinifera HOM05D003508 ORTHO05D004579 1.7e-40 169.9 142 62.0
FvH4_7g05610 Fragaria vesca HOM05D003508 ORTHO05D004579 2.3e-40 169.5 138 63.8
FAN01G1243 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.3e-40 169.5 138 63.8
FAN03G1980 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.3e-40 169.5 138 63.8
FAN06G4590 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.3e-40 169.5 138 63.8
FAN10G3478 Fragaria x ananassa HOM05D003508 ORTHO05D004579 2.3e-40 169.5 138 63.8
Glyma.20G109900 Glycine max HOM05D003508 ORTHO05D004579 2.3e-40 169.5 138 63.8
TAR633G0880 Trochodendron aralioides HOM05D003508 ORTHO05D004579 2.3e-40 169.5 137 62.8
C08p29490 Brassica napus HOM05D003508 ORTHO05D004579 3.0e-40 169.1 137 62.8
AUR62007446 Chenopodium quinoa HOM05D003508 ORTHO05D004579 3.0e-40 169.1 138 62.3
Duzib106G0726 Durio zibethinus HOM05D003508 ORTHO05D004579 3.0e-40 169.1 137 63.5
THA.LOC104811335 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 5.1e-40 168.3 137 63.5
Actinidia34720 Actinidia chinensis HOM05D003508 ORTHO05D004579 6.6e-40 167.9 138 61.6
Ah.02g117270 Amaranthus hybridus HOM05D003508 ORTHO05D004579 6.6e-40 167.9 138 62.3
Solyc11g007020.2 Solanum lycopersicum HOM05D003508 ORTHO05D004579 6.6e-40 167.9 138 63.8
Sopen11g002940 Solanum pennellii HOM05D003508 ORTHO05D004579 6.6e-40 167.9 138 63.8
PGSC0003DMG400023978 Solanum tuberosum HOM05D003508 ORTHO05D004579 6.6e-40 167.9 138 63.8
ATR0081G016 Amborella trichopoda HOM05D003508 ORTHO05D004579 8.7e-40 167.5 140 62.9
RcHm_v2.0_Chr1g0332421 Rosa chinensis HOM05D003508 ORTHO05D004579 8.7e-40 167.5 138 63.0
SGA_v2.0_scaffold7G04100 Striga asiatica HOM05D003508 ORTHO05D004579 8.7e-40 167.5 144 59.0
TWI63G0607 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 8.7e-40 167.5 143 61.5
EL10Ac5g12977 Beta vulgaris HOM05D003508 ORTHO05D004579 1.1e-39 167.2 138 62.3
Os02g0109100 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 1.1e-39 167.2 137 63.5
Zm00001eb056620 Zea mays HOM05D003508 ORTHO05D004579 1.1e-39 167.2 137 63.5
PGSC0003DMG400016014 Solanum tuberosum HOM05D003508 ORTHO05D004579 1.5e-39 166.8 138 62.3
Os02g0107200 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 1.9e-39 166.4 137 63.5
PSO339G4868 Papaver somniferum HOM05D003508 ORTHO05D004579 1.9e-39 166.4 138 60.9
PSO384G2067 Papaver somniferum HOM05D003508 ORTHO05D004579 1.9e-39 166.4 138 60.9
Sabra08G0014400 Salix brachista HOM05D003508 ORTHO05D004579 1.9e-39 166.4 138 62.3
TWI38G0289 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 1.9e-39 166.4 143 61.5
SalBow6G1879 Salvia bowleyana HOM05D003508 ORTHO05D004579 2.5e-39 166.0 144 59.0
AUR62027288 Chenopodium quinoa HOM05D003508 ORTHO05D004579 3.3e-39 165.6 138 61.6
Zm00001eb257840 Zea mays HOM05D003508 ORTHO05D004579 3.3e-39 165.6 137 62.8
Migut.F00911 Erythranthe guttata HOM05D003508 ORTHO05D004579 4.3e-39 165.2 143 59.4
Glyma.10G279800 Glycine max HOM05D003508 ORTHO05D004579 7.3e-39 164.5 138 62.3
MSTRG.27535 Avicennia marina HOM05D003508 ORTHO05D004579 9.6e-39 164.1 142 57.7
vmacro10305 Vaccinium macrocarpon HOM05D003508 ORTHO05D004579 1.3e-38 163.7 138 60.9
BcaNung06364 Brassica carinata HOM05D003508 ORTHO05D004579 3.6e-38 162.2 140 60.0
CsaV3_5G035560 Cucumis sativus L. HOM05D003508 ORTHO05D004579 3.6e-38 162.2 137 59.9
Rhsim09G0142500 Rhododendron simsii HOM05D003508 ORTHO05D004579 3.6e-38 162.2 138 60.9
MELO3C012357.2 Cucumis melo HOM05D003508 ORTHO05D004579 8.1e-38 161.0 137 59.9
SHI21271 Sapria himalayana HOM05D003508 ORTHO05D004579 8.1e-38 161.0 138 59.4
ClCG05G021710 Citrullus lanatus HOM05D003508 ORTHO05D004579 1.1e-37 160.6 137 59.9
PGSC0003DMG400011923 Solanum tuberosum HOM05D003508 ORTHO05D004579 1.1e-37 160.6 137 59.9
Sed0023449 Sechium edule HOM05D003508 ORTHO05D004579 1.8e-37 159.8 137 59.9
HPP92_006808 Vanilla planifolia HOM05D003508 ORTHO05D004579 2.4e-37 159.5 136 60.3
CSS0018426 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 4.0e-37 158.7 138 58.7
Lj2C31T21 Lonicera japonica HOM05D003508 ORTHO05D004579 4.4e-36 155.2 118 63.6
QL04p041546 Quercus lobata HOM05D003508 ORTHO05D004579 9.9e-36 154.1 106 71.7
Actinidia18595 Actinidia chinensis HOM05D003508 ORTHO05D004579 1.3e-35 153.7 127 62.2
SEGI_06330 Sequoiadendron giganteum HOM05D003508 ORTHO05D004579 4.2e-34 148.7 137 56.2
HanXRQChr02g0038371 Helianthus annuus HOM05D003508 ORTHO05D004579 3.0e-32 142.5 75 93.3
Eucgr.G02693 Eucalyptus grandis HOM05D003508 ORTHO05D004579 5.1e-32 141.7 138 51.4
Peaxi162Scf00173g00046 Petunia axillaris HOM05D003508 ORTHO05D004579 6.6e-32 141.4 138 58.0
Rhsim03G0099000 Rhododendron simsii HOM05D003508 ORTHO05D004579 6.6e-32 141.4 174 47.7
Pp3c6_12700 Physcomitrium patens HOM05D003508 ORTHO05D004579 1.6e-30 136.7 137 53.3
Pp3c5_15100 Physcomitrium patens HOM05D003508 ORTHO05D004579 2.1e-30 136.3 137 51.8
AagrBONN_evm.TU.Sc2ySwM_117.3316 Anthoceros agrestis HOM05D003508 ORTHO05D004579 3.6e-30 135.6 137 52.6
CBR_g26358 Chara braunii HOM05D003508 ORTHO05D004579 4.8e-30 135.2 138 52.9
SMO203G0120 Selaginella moellendorffii HOM05D003508 ORTHO05D004579 9.0e-29 131.0 137 51.8
PGSC0003DMG400011919 Solanum tuberosum HOM05D003508 ORTHO05D004579 3.4e-28 129.0 92 67.4
Actinidia36696 Actinidia chinensis HOM05D003508 ORTHO05D004579 5.4e-26 121.7 83 71.1
TPR.G2474 Trifolium pratense HOM05D003508 ORTHO05D004579 4.6e-25 118.6 131 52.7
MBI16_g04457_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 1.3e-24 117.1 118 55.1
Nn5g30614 Nelumbo nucifera HOM05D003508 ORTHO05D004579 1.1e-21 107.5 111 51.4
MBI17_g42676_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 4.0e-21 105.5 83 63.9
Haze_01394 Corylus avellana HOM05D003508 ORTHO05D004579 1.2e-20 104.0 82 63.4
QL04p041875 Quercus lobata HOM05D003508 ORTHO05D004579 9.3e-18 94.4 88 56.8
CsaV3_7G016190 Cucumis sativus L. HOM05D003508 ORTHO05D004579 1.8e-16 90.1 120 43.3
Rhsim03G0099400 Rhododendron simsii HOM05D003508 ORTHO05D004579 2.8e-14 82.8 57 66.7
Mapoly0007s0128 Marchantia polymorpha HOM05D003508 ORTHO05D004579 1.0e-11 74.3 74 47.3
Haze_01395 Corylus avellana HOM05D003508 ORTHO05D004579 5.0e-11 72.0 63 54.0
BcaNung06362 Brassica carinata HOM05D003508 ORTHO05D004579 6.5e-11 71.6 61 59.0
Nn8g38869 Nelumbo nucifera HOM05D003508 ORTHO05D004579 1.4e-10 70.5 61 59.0
Sc06g0002320 Simmondsia chinensis HOM05D003508 ORTHO05D004579 1.6e-09 67.0 53 62.3
Atru.chr5.1129 Acer truncatum HOM05D003508 ORTHO05D004579 2.7e-09 66.2 76 48.7
Haze_26564 Corylus avellana HOM05D003508 ORTHO05D004579 3.9e-08 62.4 131 32.8
TAR636G0237 Trochodendron aralioides HOM05D003508 ORTHO05D004579 5.1e-08 62.0 59 57.6
Nitab4.5_0000561g0090 Nicotiana tabacum HOM05D003508 ORTHO05D017053 6.7e-08 61.6 63 54.0
Prupe.2G078500 Prunus persica HOM05D003508 ORTHO05D335769 2.2e-06 56.6 43 62.8


User provided reference genes

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