Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0461981 Helianthus annuus HOM05D002459 ORTHO05D227103 3.7e-188 661.4 334 100.0
HanXRQChr12g0359071 Helianthus annuus HOM05D002459 ORTHO05D003006 8.2e-18 95.5 103 53.4
ECA236G2382 Erigeron canadensis HOM05D002459 ORTHO05D003006 1.4e-14 84.7 107 48.6
ECA234G2178 Erigeron canadensis HOM05D002459 ORTHO05D003006 1.9e-14 84.3 104 51.0
Prupe.4G288400 Prunus persica HOM05D002459 ORTHO05D003006 9.3e-14 82.0 130 40.8
MD03G1233800 Malus domestica HOM05D002459 ORTHO05D003006 2.1e-13 80.9 130 40.8
FvH4_1g25920 Fragaria vesca HOM05D002459 ORTHO05D003006 7.9e-13 79.0 51 78.4
FAN19G1658 Fragaria x ananassa HOM05D002459 ORTHO05D003006 7.9e-13 79.0 51 78.4
FAN26G2502 Fragaria x ananassa HOM05D002459 ORTHO05D003006 3.0e-12 77.0 49 79.6
Lsat_1_v5_gn_5_78841 Lactuca sativa HOM05D002459 ORTHO05D003006 3.0e-12 77.0 103 42.7
MD03G1212700 Malus domestica HOM05D002459 ORTHO05D003006 3.9e-12 76.6 130 39.2
FAN23G2218 Fragaria x ananassa HOM05D002459 ORTHO05D003006 6.7e-12 75.9 49 79.6
FAN28G0087 Fragaria x ananassa HOM05D002459 ORTHO05D003006 6.7e-12 75.9 49 79.6
RcHm_v2.0_Chr3g0485061 Rosa chinensis HOM05D002459 ORTHO05D003006 8.7e-12 75.5 48 81.2
BraA06t26381Z Brassica rapa HOM05D002459 ORTHO05D003006 2.5e-11 73.9 133 37.6
Cc00_g00830 Coffea canephora HOM05D002459 ORTHO05D003006 3.3e-11 73.6 103 47.6
Actinidia19945 Actinidia chinensis HOM05D002459 ORTHO05D003006 4.3e-11 73.2 100 41.0
arahy.Tifrunner.gnm1.ann1.QD9RQK Arachis hypogaea HOM05D002459 ORTHO05D003006 4.3e-11 73.2 100 44.0
PSO210G2919 Papaver somniferum HOM05D002459 ORTHO05D003006 4.3e-11 73.2 129 38.8
PSO210G5621 Papaver somniferum HOM05D002459 ORTHO05D003006 4.3e-11 73.2 129 38.8
MSTRG.21976 Avicennia marina HOM05D002459 ORTHO05D003006 7.4e-11 72.4 100 44.0
Dinv07279 Davidia involucrata HOM05D002459 ORTHO05D003006 1.3e-10 71.6 99 43.4
Thhalv10003814m.g Eutrema salsugineum HOM05D002459 ORTHO05D003006 1.3e-10 71.6 104 44.2
Lsat_1_v5_gn_7_45361 Lactuca sativa HOM05D002459 ORTHO05D003006 2.2e-10 70.9 100 40.0
QL10p037432 Quercus lobata HOM05D002459 ORTHO05D003006 2.2e-10 70.9 129 38.0
Aqoxy6G00039 Aquilegia oxysepala HOM05D002459 ORTHO05D003006 2.8e-10 70.5 129 39.5
Lsat_1_v5_gn_5_79701 Lactuca sativa HOM05D002459 ORTHO05D003006 2.8e-10 70.5 48 66.7
Rhsim11G0171500 Rhododendron simsii HOM05D002459 ORTHO05D003006 2.8e-10 70.5 101 40.6
Sc06g0005290 Simmondsia chinensis HOM05D002459 ORTHO05D003006 2.8e-10 70.5 48 68.8
Aa31LG11G2970 Aethionema arabicum HOM05D002459 ORTHO05D003006 3.7e-10 70.1 105 41.9
SGA_v2.0_scaffold34G13683 Striga asiatica HOM05D002459 ORTHO05D003006 3.7e-10 70.1 49 67.3
arahy.Tifrunner.gnm1.ann1.30VNIJ Arachis hypogaea HOM05D002459 ORTHO05D003006 8.2e-10 68.9 100 43.0
CSS0046129 Camellia sinensis var. sinensis HOM05D002459 ORTHO05D003006 8.2e-10 68.9 101 39.6
MBI06_g32146_MAGBIO Magnolia biondii HOM05D002459 ORTHO05D003006 8.2e-10 68.9 100 39.0
Carub.0006s2134 Capsella rubella HOM05D002459 ORTHO05D003006 1.1e-09 68.6 105 41.0
CiPaw.15G185000 Carya illinoinensis HOM05D002459 ORTHO05D003006 1.1e-09 68.6 101 41.6
Sp2g23630 Schrenkiella parvula HOM05D002459 ORTHO05D003006 1.1e-09 68.6 134 35.8
COL.COLO4_33528 Corchorus olitorius HOM05D002459 ORTHO05D003006 1.4e-09 68.2 99 44.4
Sed0019408 Sechium edule HOM05D002459 ORTHO05D003006 1.4e-09 68.2 104 46.2
TPR.G7788 Trifolium pratense HOM05D002459 ORTHO05D003006 1.4e-09 68.2 103 44.7
AL6G34840 Arabidopsis lyrata HOM05D002459 ORTHO05D003006 1.8e-09 67.8 134 37.3
Cpa.g.sc138.39 Carica papaya HOM05D002459 ORTHO05D003006 1.8e-09 67.8 49 67.3
Ca_17044_v3 Cicer arietinum L. HOM05D002459 ORTHO05D003006 1.8e-09 67.8 100 45.0
CDE12G0492 Ceratophyllum demersum HOM05D002459 ORTHO05D003006 2.4e-09 67.4 100 40.0
TAR376G0537 Trochodendron aralioides HOM05D002459 ORTHO05D003006 3.1e-09 67.0 99 40.4
Ca_08895_v3 Cicer arietinum L. HOM05D002459 ORTHO05D003006 4.1e-09 66.6 113 42.5
Glyma.04G203600 Glycine max HOM05D002459 ORTHO05D003006 4.1e-09 66.6 103 39.8
Glyma.06G161700 Glycine max HOM05D002459 ORTHO05D003006 4.1e-09 66.6 103 40.8
Nitab4.5_0003717g0010 Nicotiana tabacum HOM05D002459 ORTHO05D003006 4.1e-09 66.6 100 41.0
SalBow2G2239 Salvia bowleyana HOM05D002459 ORTHO05D003006 4.1e-09 66.6 48 68.8
vmacro08855 Vaccinium macrocarpon HOM05D002459 ORTHO05D003006 4.1e-09 66.6 102 40.2
Atru.chr3.1464 Acer truncatum HOM05D002459 ORTHO05D003006 5.3e-09 66.2 78 50.0
ATR1089G089 Amborella trichopoda HOM05D002459 ORTHO05D003006 5.3e-09 66.2 100 42.0
Psat5g053480 Pisum sativum HOM05D002459 ORTHO05D003006 5.3e-09 66.2 51 58.8
Sed0019392 Sechium edule HOM05D002459 ORTHO05D003006 5.3e-09 66.2 48 70.8
THA.LOC104800496 Tarenaya hassleriana HOM05D002459 ORTHO05D003006 5.3e-09 66.2 103 38.8
VMungo1127G0706 Vigna mungo HOM05D002459 ORTHO05D003006 5.3e-09 66.2 103 41.7
C07p43980 Brassica napus HOM05D002459 ORTHO05D003006 6.9e-09 65.9 134 36.6
BolC7t44926H Brassica oleracea HOM05D002459 ORTHO05D003006 6.9e-09 65.9 134 36.6
Lj4A821T47 Lonicera japonica HOM05D002459 ORTHO05D003006 6.9e-09 65.9 103 40.8
MBI03_g05194_MAGBIO Magnolia biondii HOM05D002459 ORTHO05D003006 6.9e-09 65.9 100 38.0
Nitab4.5_0000218g0100 Nicotiana tabacum HOM05D002459 ORTHO05D003006 6.9e-09 65.9 100 41.0
Lj1C953T6 Lonicera japonica HOM05D002459 ORTHO05D003006 9.1e-09 65.5 131 35.1
Peaxi162Scf00651g00012 Petunia axillaris HOM05D002459 ORTHO05D003006 9.1e-09 65.5 100 39.0
Rhsim04G0059000 Rhododendron simsii HOM05D002459 ORTHO05D003006 9.1e-09 65.5 101 39.6
RhsimUnG0197500 Rhododendron simsii HOM05D002459 ORTHO05D003006 9.1e-09 65.5 101 39.6
SalBow2G2283 Salvia bowleyana HOM05D002459 ORTHO05D003006 1.2e-08 65.1 47 68.1
vmacro19786 Vaccinium macrocarpon HOM05D002459 ORTHO05D003006 1.2e-08 65.1 105 41.0
Phvul.009G159600 Phaseolus vulgaris HOM05D002459 ORTHO05D003006 1.5e-08 64.7 103 40.8
Rhsim04G0129300 Rhododendron simsii HOM05D002459 ORTHO05D003006 2.0e-08 64.3 96 44.8
CAN.G10.9 Capsicum annuum HOM05D002459 ORTHO05D003006 2.6e-08 63.9 100 39.0
Cfa020920 Carpinus fangiana HOM05D002459 ORTHO05D003006 2.6e-08 63.9 105 40.0
Haze_19354 Corylus avellana HOM05D002459 ORTHO05D003006 2.6e-08 63.9 105 40.0
Sabra19G0012600 Salix brachista HOM05D002459 ORTHO05D003006 2.6e-08 63.9 99 40.4
AT5G23570 Arabidopsis thaliana HOM05D002459 ORTHO05D003006 3.4e-08 63.5 79 45.6
MELO3C023207.2 Cucumis melo HOM05D002459 ORTHO05D003006 3.4e-08 63.5 49 65.3
CsaV3_2G019630 Cucumis sativus L. HOM05D002459 ORTHO05D003006 3.4e-08 63.5 49 65.3
Solyc04g025300.3 Solanum lycopersicum HOM05D002459 ORTHO05D003006 3.4e-08 63.5 100 40.0
Sopen04g011950 Solanum pennellii HOM05D002459 ORTHO05D003006 3.4e-08 63.5 100 40.0
Gohir.A10G158700 Gossypium hirsutum HOM05D002459 ORTHO05D003006 4.5e-08 63.2 99 42.4
Manes.12G081200 Manihot esculenta HOM05D002459 ORTHO05D003006 4.5e-08 63.2 130 35.4
TWI79G0941 Tripterygium wilfordii HOM05D002459 ORTHO05D003006 4.5e-08 63.2 48 62.5
Sabra04G0083500 Salix brachista HOM05D002459 ORTHO05D003006 5.9e-08 62.8 98 40.8
TWI31G0101 Tripterygium wilfordii HOM05D002459 ORTHO05D003006 5.9e-08 62.8 48 62.5
Ciclev10025262m.g Citrus clementina HOM05D002459 ORTHO05D003006 7.7e-08 62.4 79 50.6
Gohir.A10G158600 Gossypium hirsutum HOM05D002459 ORTHO05D003006 7.7e-08 62.4 130 36.9
Gohir.D10G109900 Gossypium hirsutum HOM05D002459 ORTHO05D003006 7.7e-08 62.4 130 36.9
Gohir.D10G110000 Gossypium hirsutum HOM05D002459 ORTHO05D003006 7.7e-08 62.4 130 36.9
Gorai.011G121000 Gossypium raimondii HOM05D002459 ORTHO05D003006 7.7e-08 62.4 130 36.9
Gorai.011G121100 Gossypium raimondii HOM05D002459 ORTHO05D003006 7.7e-08 62.4 130 36.9
Thecc.01G146500 Theobroma cacao HOM05D002459 ORTHO05D003006 7.7e-08 62.4 100 42.0
Lj1g0008149 Lotus japonicus HOM05D002459 ORTHO05D003006 1.0e-07 62.0 49 63.3
Medtr3g098240 Medicago truncatula HOM05D002459 ORTHO05D003006 1.0e-07 62.0 47 66.0
Nitab4.5_0000102g0250 Nicotiana tabacum HOM05D002459 ORTHO05D003006 1.0e-07 62.0 100 40.0
RcHm_v2.0_Chr7g0212021 Rosa chinensis HOM05D002459 ORTHO05D003006 1.0e-07 62.0 107 39.3
Migut.L00020 Erythranthe guttata HOM05D002459 ORTHO05D003006 1.3e-07 61.6 49 63.3
TPR.G7802 Trifolium pratense HOM05D002459 ORTHO05D003006 1.3e-07 61.6 47 63.8
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 2.2e-07 60.8 124 33.9
CARHR189950 Cardamine hirsuta HOM05D002459 ORTHO05D003006 2.2e-07 60.8 78 44.9
Medtr3g098260 Medicago truncatula HOM05D002459 ORTHO05D003006 2.2e-07 60.8 48 62.5
PSO384G1216 Papaver somniferum HOM05D002459 ORTHO05D003006 2.2e-07 60.8 127 34.6
Nitab4.5_0000027g0300 Nicotiana tabacum HOM05D002459 ORTHO05D003006 2.9e-07 60.5 100 38.0
Eucgr.H05056 Eucalyptus grandis HOM05D002459 ORTHO05D003006 3.8e-07 60.1 100 37.0
Nn5g27205 Nelumbo nucifera HOM05D002459 ORTHO05D003006 3.8e-07 60.1 130 33.8
PSO339G1333 Papaver somniferum HOM05D002459 ORTHO05D003006 3.8e-07 60.1 127 34.6
ClCG02G000180 Citrullus lanatus HOM05D002459 ORTHO05D003006 5.0e-07 59.7 49 63.3
FAN18G3053 Fragaria x ananassa HOM05D002459 ORTHO05D003006 5.0e-07 59.7 111 35.1
HPP92_004640 Vanilla planifolia HOM05D002459 ORTHO05D003006 5.0e-07 59.7 101 37.6
FAN18G1782 Fragaria x ananassa HOM05D002459 ORTHO05D003006 6.5e-07 59.3 111 34.2
Potri.018G137400 Populus trichocarpa HOM05D002459 ORTHO05D003006 6.5e-07 59.3 98 37.8
Potri.T045700 Populus trichocarpa HOM05D002459 ORTHO05D003006 6.5e-07 59.3 98 37.8
Hund21762 Selenicereus undatus HOM05D002459 ORTHO05D003006 6.5e-07 59.3 49 59.2
EL10Ac4g09741 Beta vulgaris HOM05D002459 ORTHO05D003006 8.5e-07 58.9 48 56.2
Sabra03G0012200 Salix brachista HOM05D002459 ORTHO05D003006 8.5e-07 58.9 100 38.0
FvH4_5g23140 Fragaria vesca HOM05D002459 ORTHO05D003006 1.1e-06 58.5 111 34.2
Gohir.D02G232600 Gossypium hirsutum HOM05D002459 ORTHO05D003006 1.1e-06 58.5 101 35.6
Gohir.D05G009600 Gossypium hirsutum HOM05D002459 ORTHO05D003006 1.1e-06 58.5 130 33.8
Gorai.005G260400 Gossypium raimondii HOM05D002459 ORTHO05D003006 1.1e-06 58.5 101 35.6
Gorai.009G009900 Gossypium raimondii HOM05D002459 ORTHO05D003006 1.1e-06 58.5 130 33.8
Sc21g0002080 Simmondsia chinensis HOM05D002459 ORTHO05D003006 1.1e-06 58.5 49 57.1
VMungo0251G2061 Vigna mungo HOM05D002459 ORTHO05D003006 1.1e-06 58.5 50 62.0
Gohir.A03G211000 Gossypium hirsutum HOM05D002459 ORTHO05D003006 1.4e-06 58.2 101 35.6
Potri.003G021000 Populus trichocarpa HOM05D002459 ORTHO05D003006 1.4e-06 58.2 100 38.0
SEGI_32121 Sequoiadendron giganteum HOM05D002459 ORTHO05D003006 1.4e-06 58.2 99 35.4
unitig_748.g8674 Utricularia gibba HOM05D002459 ORTHO05D003006 1.4e-06 58.2 53 54.7
Ah.11g042130 Amaranthus hybridus HOM05D002459 ORTHO05D003006 1.9e-06 57.8 79 43.0
Lalb_Chr23g0272791 Lupinus albus HOM05D002459 ORTHO05D003006 1.9e-06 57.8 48 60.4
Duzib132G0430 Durio zibethinus HOM05D002459 ORTHO05D003006 2.5e-06 57.4 133 30.8
HanXRQChr03g0062691 Helianthus annuus HOM05D002459 ORTHO05D003006 2.5e-06 57.4 101 36.6
Oeu032236.1 Olea europaea HOM05D002459 ORTHO05D003006 2.5e-06 57.4 42 66.7
Thecc.02G040600 Theobroma cacao HOM05D002459 ORTHO05D003006 2.5e-06 57.4 131 31.3
DCAR_019949 Daucus carota HOM05D002459 ORTHO05D003006 3.2e-06 57.0 102 35.3
CANSAT54G2711 Cannabis sativa HOM05D002459 ORTHO05D003006 4.2e-06 56.6 100 38.0
FAN04G0571 Fragaria x ananassa HOM05D002459 ORTHO05D003006 4.2e-06 56.6 111 34.2
Glyma.05G198500 Glycine max HOM05D002459 ORTHO05D003006 4.2e-06 56.6 49 61.2
Gohir.A05G008900 Gossypium hirsutum HOM05D002459 ORTHO05D003006 4.2e-06 56.6 130 33.1
Os12g0197500 Oryza sativa ssp. japonica HOM05D002459 ORTHO05D003006 4.2e-06 56.6 49 51.0
Phvul.002G279500 Phaseolus vulgaris HOM05D002459 ORTHO05D003006 4.2e-06 56.6 50 60.0
Os12g0197700 Oryza sativa ssp. japonica HOM05D002459 ORTHO05D003006 7.2e-06 55.8 47 57.4
SEGI_36126 Sequoiadendron giganteum HOM05D002459 ORTHO05D003006 7.2e-06 55.8 99 33.3
Zm00001eb264310 Zea mays HOM05D002459 ORTHO05D003006 7.2e-06 55.8 49 55.1
FAN08G2985 Fragaria x ananassa HOM05D002459 ORTHO05D003006 9.4e-06 55.5 112 35.7
Manes.07G014000 Manihot esculenta HOM05D002459 ORTHO05D003006 9.4e-06 55.5 101 31.7
Potri.003G187800 Populus trichocarpa HOM05D002459 ORTHO05D003006 9.4e-06 55.5 99 33.3
PGSC0003DMG400030985 Solanum tuberosum HOM05D002459 ORTHO05D003006 9.4e-06 55.5 138 31.2


User provided reference genes

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