Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1472.6 741 100.0
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1416.0 741 95.4
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1395.6 741 94.3
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1379.8 742 93.0
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1327.8 740 87.8
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1327.8 741 88.0
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1327.4 741 87.6
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1327.0 740 87.8
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1327.0 739 88.8
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1325.5 741 88.4
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1324.3 741 87.9
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1322.0 741 87.6
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1321.2 741 87.2
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1320.8 741 87.3
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1320.1 741 87.4
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1319.3 741 87.2
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1318.5 741 86.8
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1317.4 741 86.6
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1317.0 742 87.2
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1316.2 741 87.4
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1315.1 741 87.2
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1314.7 741 87.3
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1313.9 741 86.9
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1313.1 741 87.7
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1312.0 739 87.8
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1311.6 743 87.1
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1311.6 740 86.9
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1310.0 741 87.0
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1310.0 741 87.3
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1309.7 741 87.4
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1309.3 739 87.7
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1308.5 741 86.5
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 741 87.0
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 741 86.8
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1307.4 747 85.8
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1306.6 742 86.7
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1303.5 741 86.2
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1303.1 741 86.5
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1303.1 743 87.1
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1303.1 741 86.2
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1302.7 741 86.1
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1302.7 741 86.2
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 741 87.4
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 741 86.0
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1300.0 741 86.1
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1299.6 741 85.7
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1298.9 741 86.5
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1298.9 738 86.4
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1298.5 741 85.6
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1297.7 741 86.4
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1297.7 738 87.1
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1296.6 741 85.6
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1296.2 743 86.0
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1296.2 741 86.1
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1295.8 741 85.6
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1295.0 743 85.7
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1295.0 739 85.9
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 741 86.1
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1294.3 741 86.8
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1293.9 744 87.4
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1292.3 742 85.7
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1291.6 768 83.2
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1290.4 741 85.2
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1289.6 742 85.6
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1288.1 741 85.0
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1286.9 745 85.2
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1286.9 740 85.1
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1286.2 741 85.4
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1286.2 740 85.3
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1286.2 743 86.5
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1285.4 740 85.1
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1284.6 743 85.3
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1282.3 742 85.0
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1282.3 743 84.9
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1280.8 741 85.4
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1280.8 763 83.6
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1280.8 763 83.6
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1280.0 743 85.7
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1280.0 741 84.6
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1279.2 744 85.6
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1277.7 741 85.2
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1276.2 740 84.7
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1275.4 738 85.6
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1274.6 740 84.5
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1273.8 740 84.3
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1273.5 741 85.0
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1273.5 740 84.5
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1271.9 741 84.8
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1271.9 744 85.1
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1270.0 740 84.1
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1269.6 707 88.3
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1269.2 740 83.6
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1268.8 740 83.9
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1266.5 742 84.0
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1265.8 740 83.5
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1265.0 743 83.8
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1265.0 803 79.1
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1264.2 744 84.4
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1260.7 740 84.2
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1260.0 822 78.0
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1259.2 741 83.1
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1257.7 745 83.8
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1257.3 744 83.7
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1255.7 757 82.6
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1253.4 747 83.7
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1250.7 736 84.1
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1250.7 711 86.5
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1250.0 741 84.2
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1245.7 747 82.9
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1241.1 710 86.5
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1240.7 720 85.4
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1232.6 707 86.0
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1232.2 772 80.3
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1223.4 735 83.4
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1216.1 737 81.4
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1194.5 669 87.4
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1189.1 746 80.8
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1188.3 747 79.8
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1176.4 674 85.6
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1142.9 739 76.5
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1133.6 616 89.4
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1125.2 688 79.7
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1116.3 630 86.7
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1114.8 746 74.1
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1098.2 737 73.1
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1075.5 712 74.0
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 1.1e-296 1023.1 636 78.8
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 5.3e-243 844.7 667 62.5
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 5.8e-234 814.7 681 60.8
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.6e-228 796.6 538 77.1
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 2.6e-218 762.7 644 61.5
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 3.2e-208 729.2 523 72.8
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 4.2e-208 728.8 453 80.8
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.3e-204 717.2 741 54.7
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 2.4e-203 713.0 739 54.4
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 7.2e-200 701.4 464 76.1
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 9.6e-144 515.0 263 97.0
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 5.3e-134 482.6 433 61.0
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.1e-96 358.6 218 82.1
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 1.6e-85 321.6 578 37.2
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 7.2e-75 286.2 151 90.7
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 3.6e-74 283.9 143 96.5
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.0e-60 236.9 170 72.4
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 5.2e-41 173.7 294 38.1
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.9e-38 165.2 84 91.7
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 7.3e-35 153.3 80 90.0
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.1e-33 147.9 98 70.4
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 2.2e-31 141.7 72 94.4
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 5.3e-25 120.6 71 81.7
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.6e-24 118.2 80 68.8
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 3.2e-22 111.3 69 71.0
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 7.9e-21 106.7 108 55.6
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 7.9e-21 106.7 70 74.3
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 4.3e-19 100.9 85 60.0
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.3e-18 99.4 73 71.2
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.7e-18 97.8 67 73.1
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 8.1e-18 96.7 222 32.4
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 2.4e-17 95.1 69 66.7
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.1e-17 94.7 67 70.1
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 1.2e-16 92.8 85 56.5
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 5.5e-14 84.0 49 87.8
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.6e-13 82.4 61 65.6
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 3.5e-13 81.3 47 83.0
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.8e-10 71.6 43 72.1
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 2.4e-09 68.6 41 75.6
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 2.6e-08 65.1 47 61.7
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 7.6e-08 63.5 52 51.9
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 7.6e-08 63.5 46 60.9
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.0e-07 63.2 45 62.2
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 1.7e-07 62.4 33 87.9
CAN.G970.17 Capsicum annuum HOM05D004298 ORTHO05D115446 1.1e-06 59.7 58 55.2


User provided reference genes

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