Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 0.0e+00 1370.9 685 100.0
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 1.8e-277 959.1 717 69.9
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 8.5e-272 940.3 753 65.1
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 1.6e-265 919.5 762 64.3
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 1.0e-264 916.8 762 64.2
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 1.7e-264 916.0 727 65.1
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 8.0e-262 907.1 690 67.4
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 2.3e-261 905.6 755 62.6
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 3.0e-261 905.2 713 66.2
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 5.2e-261 904.4 720 65.6
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 2.6e-260 902.1 733 64.8
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 9.8e-260 900.2 725 64.7
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 1.3e-259 899.8 707 65.8
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 2.8e-259 898.7 720 65.0
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 4.9e-259 897.9 751 61.7
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 8.3e-259 897.1 720 64.9
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 7.3e-255 884.0 756 60.8
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 4.7e-254 881.3 670 67.0
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 6.1e-254 880.9 729 64.1
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 6.1e-254 880.9 712 63.5
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 1.8e-253 879.4 761 60.7
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 6.8e-253 877.5 756 60.1
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 7.5e-252 874.0 783 59.5
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 1.7e-251 872.8 755 60.3
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 6.4e-251 870.9 764 60.5
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 1.1e-250 870.2 745 61.2
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 1.4e-250 869.8 774 59.6
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 3.2e-250 868.6 713 62.7
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 9.2e-250 867.1 766 60.1
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 9.2e-250 867.1 739 60.8
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 1.2e-249 866.7 761 60.1
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 3.5e-249 865.1 756 60.7
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 4.6e-249 864.8 739 60.1
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 1.3e-248 863.2 756 59.8
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 1.7e-248 862.8 707 63.6
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 2.3e-248 862.4 764 59.0
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 3.0e-248 862.1 754 61.1
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 5.0e-248 861.3 762 59.6
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 8.6e-248 860.5 741 60.2
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 8.6e-248 860.5 741 60.2
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 3.3e-247 858.6 735 59.0
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 4.3e-247 858.2 756 59.4
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 5.6e-247 857.8 749 59.0
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 9.5e-247 857.1 717 61.5
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 1.6e-246 856.3 753 59.6
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 1.6e-246 856.3 769 59.4
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 3.6e-246 855.1 746 60.2
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 3.6e-246 855.1 712 62.2
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 6.2e-246 854.4 752 59.2
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 8.0e-246 854.0 749 59.5
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 1.8e-245 852.8 746 59.4
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 8.9e-245 850.5 770 58.1
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 1.5e-244 849.7 717 61.9
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 2.0e-244 849.4 745 59.5
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 4.4e-244 848.2 746 59.5
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 1.3e-243 846.7 715 60.6
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.2e-243 845.9 751 59.0
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 1.9e-242 842.8 767 58.9
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 1.9e-242 842.8 752 58.5
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.4e-242 842.4 763 58.8
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 5.4e-242 841.3 747 59.8
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 9.2e-242 840.5 762 58.3
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 6.6e-240 834.3 768 58.5
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 1.5e-239 833.2 698 61.6
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 9.5e-239 830.5 696 61.5
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.8e-238 828.9 702 61.3
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 1.4e-237 826.6 702 61.3
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 3.1e-237 825.5 692 61.6
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 2.6e-236 822.4 711 59.6
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 4.4e-236 821.6 810 54.6
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.7e-235 819.7 681 62.6
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 2.9e-235 818.9 685 62.6
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 4.9e-235 818.1 691 61.1
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 1.1e-234 817.0 705 60.3
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 1.2e-233 813.5 676 61.7
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 1.6e-233 813.1 691 60.8
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.3e-232 810.1 685 61.2
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 8.6e-232 807.4 738 58.4
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 1.1e-231 807.0 690 60.6
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 2.4e-229 799.3 574 73.2
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 4.2e-226 788.5 662 60.6
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 4.2e-226 788.5 662 60.6
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 4.2e-226 788.5 720 58.8
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 2.3e-224 782.7 755 55.2
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 1.1e-221 773.9 705 56.0
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 2.6e-220 769.2 708 58.3
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 9.3e-218 760.8 991 46.1
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 1.6e-209 733.4 700 55.4
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 3.9e-208 728.8 856 48.0
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 6.7e-208 728.0 677 56.0
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 1.5e-207 726.9 692 57.8
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 2.6e-204 716.1 948 45.6
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 3.4e-204 715.7 639 59.0
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 6.2e-198 694.9 655 58.5
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 7.6e-196 688.0 758 48.8
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 7.6e-196 688.0 601 58.4
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 2.4e-181 639.8 680 49.0
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 7.2e-178 628.2 460 69.1
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 4.2e-170 602.4 516 60.9
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.5e-162 577.4 599 54.8
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 1.5e-162 577.4 744 43.7
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 1.4e-157 560.8 783 40.9
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 3.1e-149 533.1 729 43.5
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 3.3e-130 469.9 391 60.1
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 2.0e-127 460.7 381 60.4
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.9e-118 430.3 633 41.1
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 1.6e-108 397.9 448 47.8
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.3e-107 394.0 451 47.7
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 9.0e-104 382.1 455 47.5
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 3.2e-101 373.6 652 38.2
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 1.9e-82 311.2 306 54.6
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.2e-79 302.0 327 53.5
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 4.3e-74 283.5 259 59.8
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.8e-73 280.8 294 54.4
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 4.8e-73 280.0 1015 25.6
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 1.1e-66 258.8 188 68.1
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 2.5e-61 241.1 271 53.1
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 1.8e-59 235.0 654 29.2
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 4.4e-58 230.3 330 43.0
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.2e-55 222.2 266 43.2
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 1.0e-54 219.2 160 65.0
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 2.5e-53 214.5 227 52.0
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 2.0e-50 204.9 156 60.3
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 5.0e-46 190.3 169 56.2
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 1.6e-44 185.3 124 67.7
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 1.0e-30 139.4 99 71.7
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 5.0e-30 137.1 145 48.3
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.0e-27 129.4 106 60.4
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 3.2e-24 117.9 258 37.2
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.0e-23 115.2 103 55.3
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 1.1e-21 109.4 100 62.0
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 2.3e-19 101.7 79 65.8
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 3.1e-19 101.3 207 31.4
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 3.3e-13 81.3 123 34.1
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 2.8e-12 78.2 64 57.8
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 2.2e-09 68.6 183 30.6
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 1.1e-08 66.2 166 27.7
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 9.2e-08 63.2 54 51.9
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 1.0e-06 59.7 170 24.1
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.3e-06 59.3 110 37.3
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 1.3e-06 59.3 38 65.8
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 3.0e-06 58.2 49 44.9
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 3.0e-06 58.2 49 44.9


User provided reference genes

Program Settings