Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 2.9e-38 161.4 80 100.0
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 1.8e-32 142.1 72 94.4
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 1.8e-32 142.1 72 94.4
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 2.4e-32 141.7 72 94.4
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 2.0e-31 138.7 72 91.7
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 3.4e-31 137.9 72 90.3
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 3.4e-31 137.9 72 90.3
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 5.9e-31 137.1 75 86.7
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 7.7e-31 136.7 72 90.3
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 1.3e-30 136.0 72 88.9
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 1.3e-30 136.0 72 90.3
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 1.7e-30 135.6 72 88.9
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 2.2e-30 135.2 72 88.9
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 2.9e-30 134.8 72 87.5
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 2.9e-30 134.8 72 87.5
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 2.9e-30 134.8 72 87.5
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 2.9e-30 134.8 72 87.5
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 2.9e-30 134.8 72 87.5
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 3.8e-30 134.4 72 87.5
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 3.8e-30 134.4 72 88.9
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 3.8e-30 134.4 72 87.5
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 3.8e-30 134.4 72 86.1
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 3.8e-30 134.4 72 86.1
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 5.0e-30 134.0 72 87.5
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 5.0e-30 134.0 70 91.4
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 5.0e-30 134.0 71 88.7
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 6.5e-30 133.7 72 87.5
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 8.5e-30 133.3 72 87.5
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 8.5e-30 133.3 72 87.5
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 8.5e-30 133.3 72 86.1
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 1.1e-29 132.9 72 86.1
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 1.4e-29 132.5 72 86.1
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 1.4e-29 132.5 72 86.1
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 1.4e-29 132.5 72 86.1
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 1.4e-29 132.5 72 86.1
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 1.4e-29 132.5 72 86.1
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 1.4e-29 132.5 72 86.1
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 1.4e-29 132.5 72 86.1
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 1.4e-29 132.5 72 86.1
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 1.4e-29 132.5 72 86.1
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 1.4e-29 132.5 72 86.1
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 1.4e-29 132.5 72 86.1
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 1.9e-29 132.1 72 87.5
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 1.9e-29 132.1 72 87.5
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 2.5e-29 131.7 72 86.1
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 2.5e-29 131.7 72 86.1
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 2.5e-29 131.7 72 86.1
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 2.5e-29 131.7 72 86.1
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 2.5e-29 131.7 72 86.1
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 2.5e-29 131.7 72 86.1
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 2.5e-29 131.7 72 83.3
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 2.5e-29 131.7 72 83.3
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 2.5e-29 131.7 72 86.1
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 2.5e-29 131.7 72 86.1
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 3.2e-29 131.3 72 84.7
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 3.2e-29 131.3 72 84.7
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 3.2e-29 131.3 72 86.1
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 3.2e-29 131.3 72 86.1
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 3.2e-29 131.3 72 84.7
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 3.2e-29 131.3 72 86.1
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 3.2e-29 131.3 72 86.1
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 3.2e-29 131.3 72 84.7
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 4.2e-29 131.0 72 86.1
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 4.2e-29 131.0 72 86.1
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 4.2e-29 131.0 72 84.7
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 4.2e-29 131.0 72 86.1
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 4.2e-29 131.0 72 84.7
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 5.5e-29 130.6 72 84.7
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 5.5e-29 130.6 72 86.1
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 7.2e-29 130.2 72 84.7
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 7.2e-29 130.2 73 82.2
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 7.2e-29 130.2 72 84.7
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 7.2e-29 130.2 72 84.7
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 9.4e-29 129.8 72 83.3
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 9.4e-29 129.8 72 84.7
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 9.4e-29 129.8 70 87.1
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 9.4e-29 129.8 70 87.1
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 1.2e-28 129.4 72 83.3
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 1.2e-28 129.4 72 83.3
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 1.2e-28 129.4 72 83.3
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 1.6e-28 129.0 72 80.6
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 1.6e-28 129.0 72 84.7
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 1.6e-28 129.0 72 84.7
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 1.6e-28 129.0 72 83.3
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 1.6e-28 129.0 72 83.3
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 2.1e-28 128.6 72 83.3
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 2.1e-28 128.6 72 83.3
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 2.1e-28 128.6 72 83.3
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 2.1e-28 128.6 70 87.1
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 2.7e-28 128.3 72 81.9
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 2.7e-28 128.3 72 83.3
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 2.7e-28 128.3 72 83.3
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 2.7e-28 128.3 72 83.3
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 3.6e-28 127.9 72 81.9
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 4.6e-28 127.5 72 83.3
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 4.6e-28 127.5 70 84.3
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 4.6e-28 127.5 70 85.7
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 4.6e-28 127.5 72 81.9
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 4.6e-28 127.5 72 81.9
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 7.9e-28 126.7 72 80.6
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 7.9e-28 126.7 72 80.6
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 7.9e-28 126.7 72 80.6
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 7.9e-28 126.7 72 81.9
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 7.9e-28 126.7 72 80.6
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 7.9e-28 126.7 70 84.3
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 7.9e-28 126.7 72 81.9
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 7.9e-28 126.7 72 81.9
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 1.0e-27 126.3 72 80.6
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 1.0e-27 126.3 70 85.7
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 1.0e-27 126.3 70 85.7
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 1.0e-27 126.3 72 80.6
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 1.4e-27 125.9 72 81.9
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 1.4e-27 125.9 72 81.9
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 1.4e-27 125.9 72 81.9
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 1.8e-27 125.6 72 79.2
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 1.8e-27 125.6 72 80.6
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 3.0e-27 124.8 72 80.6
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 3.0e-27 124.8 72 84.7
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 3.0e-27 124.8 71 83.1
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.0e-27 124.8 72 81.9
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 3.0e-27 124.8 70 82.9
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 3.0e-27 124.8 72 80.6
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 6.7e-27 123.6 70 81.4
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 8.8e-27 123.2 71 84.5
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 1.1e-26 122.9 72 79.2
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 5.7e-26 120.6 72 76.4
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 1.7e-25 119.0 69 79.7
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 6.3e-25 117.1 72 73.6
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 8.2e-25 116.7 105 60.0
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 6.9e-24 113.6 69 73.9
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 7.7e-23 110.2 69 71.0
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 1.3e-22 109.4 71 70.4
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 5.0e-22 107.5 69 69.6
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 6.5e-22 107.1 133 47.4
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 1.8e-16 89.0 53 75.5
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 3.1e-16 88.2 72 58.3
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 2.2e-14 82.0 69 56.5
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 1.1e-13 79.7 69 56.5


User provided reference genes

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