Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr12g0355211 Helianthus annuus HOM05D004857 ORTHO05D005663 2.8e-146 521.9 264 100.0
HanXRQChr12g0355141 Helianthus annuus HOM05D004857 ORTHO05D005663 6.6e-79 298.1 400 48.0
TAR383G0334 Trochodendron aralioides HOM05D004857 ORTHO05D005663 1.0e-68 264.2 425 42.4
Lsat_1_v5_gn_5_138760 Lactuca sativa HOM05D004857 ORTHO05D005663 1.8e-68 263.5 402 45.5
MSTRG.19426 Avicennia marina HOM05D004857 ORTHO05D005663 7.5e-67 258.1 423 41.6
Nn7g37725 Nelumbo nucifera HOM05D004857 ORTHO05D005663 9.8e-67 257.7 421 41.1
Peaxi162Scf01184g10017 Petunia axillaris HOM05D004857 ORTHO05D005663 2.2e-66 256.5 415 42.9
Dinv44702 Davidia involucrata HOM05D004857 ORTHO05D005663 2.9e-66 256.1 425 41.4
GSVIVG01015011001 Vitis vinifera HOM05D004857 ORTHO05D005663 4.9e-66 255.4 424 41.0
ATR0681G246 Amborella trichopoda HOM05D004857 ORTHO05D005663 6.4e-66 255.0 419 43.2
CAN.G457.2 Capsicum annuum HOM05D004857 ORTHO05D005663 6.4e-66 255.0 411 43.1
FAN23G0125 Fragaria x ananassa HOM05D004857 ORTHO05D005663 8.3e-66 254.6 422 41.9
Actinidia30259 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.4e-65 253.8 414 42.0
Actinidia39614 Actinidia chinensis HOM05D004857 ORTHO05D005663 1.4e-65 253.8 425 42.1
FAN28G2840 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.4e-65 253.8 422 41.5
CANSAT56G1105 Cannabis sativa HOM05D004857 ORTHO05D005663 1.9e-65 253.4 431 41.8
CiPaw.03G200100 Carya illinoinensis HOM05D004857 ORTHO05D005663 1.9e-65 253.4 416 41.6
Solyc07g017490.3 Solanum lycopersicum HOM05D004857 ORTHO05D005663 1.9e-65 253.4 414 42.0
Sopen07g006280 Solanum pennellii HOM05D004857 ORTHO05D005663 1.9e-65 253.4 414 42.0
SalBow6G1194 Salvia bowleyana HOM05D004857 ORTHO05D005663 2.4e-65 253.1 430 41.4
vmacro17076 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 2.4e-65 253.1 424 40.8
RcHm_v2.0_Chr2g0095991 Rosa chinensis HOM05D004857 ORTHO05D005663 3.2e-65 252.7 420 43.3
Thecc.09G070000 Theobroma cacao HOM05D004857 ORTHO05D005663 3.2e-65 252.7 413 43.6
PGSC0003DMG401015931 Solanum tuberosum HOM05D004857 ORTHO05D005663 4.1e-65 252.3 414 42.0
arahy.Tifrunner.gnm1.ann1.N9ATPP Arachis hypogaea HOM05D004857 ORTHO05D005663 5.4e-65 251.9 423 42.8
Gohir.D05G037700 Gossypium hirsutum HOM05D004857 ORTHO05D005663 5.4e-65 251.9 416 41.8
Gorai.009G038200 Gossypium raimondii HOM05D004857 ORTHO05D005663 5.4e-65 251.9 416 41.8
FvH4_1g09440 Fragaria vesca HOM05D004857 ORTHO05D005663 7.0e-65 251.5 420 42.4
Gohir.A05G036200 Gossypium hirsutum HOM05D004857 ORTHO05D005663 7.0e-65 251.5 417 41.7
Oeu041809.2 Olea europaea HOM05D004857 ORTHO05D005663 7.0e-65 251.5 410 43.4
SGA_v2.0_scaffold31G12698 Striga asiatica HOM05D004857 ORTHO05D005663 7.0e-65 251.5 415 40.7
MD15G1223900 Malus domestica HOM05D004857 ORTHO05D005663 9.2e-65 251.1 424 42.2
FAN26G0201 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.2e-64 250.8 422 41.5
Duzib168G0723 Durio zibethinus HOM05D004857 ORTHO05D005663 1.6e-64 250.4 412 43.4
arahy.Tifrunner.gnm1.ann1.N970BB Arachis hypogaea HOM05D004857 ORTHO05D005663 2.0e-64 250.0 423 42.6
Lj6g0010651 Lotus japonicus HOM05D004857 ORTHO05D005663 2.0e-64 250.0 418 42.3
MD02G1102700 Malus domestica HOM05D004857 ORTHO05D005663 2.0e-64 250.0 434 40.3
CSS0030162 Camellia sinensis var. sinensis HOM05D004857 ORTHO05D005663 2.7e-64 249.6 417 41.0
FAN19G2563 Fragaria x ananassa HOM05D004857 ORTHO05D005663 2.7e-64 249.6 422 41.9
VMungo1309G0172 Vigna mungo HOM05D004857 ORTHO05D005663 2.7e-64 249.6 415 41.7
PSO104G0255 Papaver somniferum HOM05D004857 ORTHO05D005663 3.5e-64 249.2 426 41.3
Migut.J00878 Erythranthe guttata HOM05D004857 ORTHO05D005663 4.6e-64 248.8 435 39.3
Cfa002936 Carpinus fangiana HOM05D004857 ORTHO05D005663 6.0e-64 248.4 417 41.2
MBI19_g37995_MAGBIO Magnolia biondii HOM05D004857 ORTHO05D005663 6.0e-64 248.4 417 40.3
Phvul.009G223400 Phaseolus vulgaris HOM05D004857 ORTHO05D005663 6.0e-64 248.4 415 42.2
Rhsim05G0001900 Rhododendron simsii HOM05D004857 ORTHO05D005663 6.0e-64 248.4 413 42.1
Glyma.09G074100 Glycine max HOM05D004857 ORTHO05D005663 7.8e-64 248.1 415 41.2
Nitab4.5_0001114g0050 Nicotiana tabacum HOM05D004857 ORTHO05D005663 7.8e-64 248.1 412 41.7
Nitab4.5_0002665g0010 Nicotiana tabacum HOM05D004857 ORTHO05D005663 7.8e-64 248.1 412 42.2
HPP92_017869 Vanilla planifolia HOM05D004857 ORTHO05D005663 7.8e-64 248.1 395 44.3
CDE05G0890 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.0e-63 247.7 424 40.3
Manes.16G090200 Manihot esculenta HOM05D004857 ORTHO05D005663 1.0e-63 247.7 412 42.5
CDE05G0310 Ceratophyllum demersum HOM05D004857 ORTHO05D005663 1.3e-63 247.3 424 40.1
Eucgr.C00765 Eucalyptus grandis HOM05D004857 ORTHO05D005663 1.3e-63 247.3 423 40.9
Sc08g0005030 Simmondsia chinensis HOM05D004857 ORTHO05D005663 1.3e-63 247.3 423 39.7
Ciclev10007866m.g Citrus clementina HOM05D004857 ORTHO05D005663 1.7e-63 246.9 427 40.7
Lj4A920T60 Lonicera japonica HOM05D004857 ORTHO05D005663 1.7e-63 246.9 428 40.2
Glyma.15G183100 Glycine max HOM05D004857 ORTHO05D005663 2.3e-63 246.5 413 41.9
Cc06_g12730 Coffea canephora HOM05D004857 ORTHO05D005663 3.0e-63 246.1 423 40.0
PSO421G0319 Papaver somniferum HOM05D004857 ORTHO05D005663 3.9e-63 245.7 436 40.4
Duzib187G1561 Durio zibethinus HOM05D004857 ORTHO05D005663 5.0e-63 245.4 415 41.9
Lalb_Chr08g0232851 Lupinus albus HOM05D004857 ORTHO05D005663 5.0e-63 245.4 418 41.1
Aqoxy6G02713 Aquilegia oxysepala HOM05D004857 ORTHO05D005663 6.6e-63 245.0 418 42.1
vmacro03340 Vaccinium macrocarpon HOM05D004857 ORTHO05D005663 6.6e-63 245.0 438 39.0
COL.COLO4_21204 Corchorus olitorius HOM05D004857 ORTHO05D005663 1.5e-62 243.8 436 39.4
Prupe.7G191600 Prunus persica HOM05D004857 ORTHO05D005663 1.5e-62 243.8 432 40.0
THA.LOC104819454 Tarenaya hassleriana HOM05D004857 ORTHO05D005663 2.5e-62 243.0 420 40.2
Ca_02281_v3 Cicer arietinum L. HOM05D004857 ORTHO05D005663 3.3e-62 242.7 414 41.8
MELO3C009580.2 Cucumis melo HOM05D004857 ORTHO05D005663 7.3e-62 241.5 413 40.9
CsaV3_3G038370 Cucumis sativus L. HOM05D004857 ORTHO05D005663 7.3e-62 241.5 413 40.9
Medtr2g044200 Medicago truncatula HOM05D004857 ORTHO05D005663 7.3e-62 241.5 415 41.7
PGR142G2122 Punica granatum HOM05D004857 ORTHO05D005663 7.3e-62 241.5 423 40.9
QL11p002992 Quercus lobata HOM05D004857 ORTHO05D005663 7.3e-62 241.5 418 40.7
Sed0019967 Sechium edule HOM05D004857 ORTHO05D005663 7.3e-62 241.5 413 40.0
DCAR_024780 Daucus carota HOM05D004857 ORTHO05D005663 9.5e-62 241.1 432 39.4
FAN26G1404 Fragaria x ananassa HOM05D004857 ORTHO05D005663 1.6e-61 240.4 449 39.0
EL10Ac4g09573 Beta vulgaris HOM05D004857 ORTHO05D005663 2.1e-61 240.0 430 40.2
Potri.018G064100 Populus trichocarpa HOM05D004857 ORTHO05D005663 3.6e-61 239.2 416 40.1
Sabra18G0057000 Salix brachista HOM05D004857 ORTHO05D005663 3.6e-61 239.2 414 40.3
Hund21824 Selenicereus undatus HOM05D004857 ORTHO05D005663 4.7e-61 238.8 410 41.5
arahy.Tifrunner.gnm1.ann1.I7JLU4 Arachis hypogaea HOM05D004857 ORTHO05D005663 1.1e-60 237.7 124 96.0
Haze_26072 Corylus avellana HOM05D004857 ORTHO05D005663 2.3e-60 236.5 124 95.2
AUR62000486 Chenopodium quinoa HOM05D004857 ORTHO05D005663 4.0e-60 235.7 378 43.1
AUR62006828 Chenopodium quinoa HOM05D004857 ORTHO05D005663 6.8e-60 235.0 406 42.1
ClCG10G017920 Citrullus lanatus HOM05D004857 ORTHO05D005663 6.8e-60 235.0 125 93.6
Cpa.g.sc82.61 Carica papaya HOM05D004857 ORTHO05D005663 8.9e-60 234.6 124 95.2
Os11g0146700 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 1.5e-59 233.8 426 38.3
Atru.chr7.1770 Acer truncatum HOM05D004857 ORTHO05D005663 2.0e-59 233.4 133 88.0
Zm00001eb405000 Zea mays HOM05D004857 ORTHO05D005663 3.4e-59 232.6 424 37.7
TWI34G1843 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 4.4e-59 232.3 125 92.8
arahy.Tifrunner.gnm1.ann1.97VZCN Arachis hypogaea HOM05D004857 ORTHO05D005663 5.8e-59 231.9 124 93.5
Psat1g138640 Pisum sativum HOM05D004857 ORTHO05D005663 5.8e-59 231.9 124 94.4
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 7.5e-59 231.5 134 85.8
SHI27983 Sapria himalayana HOM05D004857 ORTHO05D005663 2.9e-58 229.6 431 38.1
TWI32G0792 Tripterygium wilfordii HOM05D004857 ORTHO05D005663 2.9e-58 229.6 124 92.7
Lsat_1_v5_gn_7_48600 Lactuca sativa HOM05D004857 ORTHO05D005663 3.7e-58 229.2 134 85.8
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 4.9e-58 228.8 134 85.1
Mapoly0117s0005 Marchantia polymorpha HOM05D004857 ORTHO05D005663 6.4e-58 228.4 430 37.7
SEGI_40202 Sequoiadendron giganteum HOM05D004857 ORTHO05D005663 1.1e-57 227.6 124 91.9
CARHR114530 Cardamine hirsuta HOM05D004857 ORTHO05D005663 5.4e-57 225.3 415 38.8
Zm00001eb163350 Zea mays HOM05D004857 ORTHO05D005663 5.4e-57 225.3 423 37.1
BcaB08g35315 Brassica carinata HOM05D004857 ORTHO05D005663 9.2e-57 224.6 436 36.5
A09p55180 Brassica napus HOM05D004857 ORTHO05D005663 3.5e-56 222.6 421 38.5
BcaC07g40818 Brassica carinata HOM05D004857 ORTHO05D005663 4.6e-56 222.2 422 38.6
C08p38110 Brassica napus HOM05D004857 ORTHO05D005663 4.6e-56 222.2 422 38.6
BolC8t51386H Brassica oleracea HOM05D004857 ORTHO05D005663 4.6e-56 222.2 422 38.6
BraA09t40926Z Brassica rapa HOM05D004857 ORTHO05D005663 4.6e-56 222.2 422 38.6
Oeu000275.2 Olea europaea HOM05D004857 ORTHO05D005663 6.0e-56 221.9 125 88.0
Sp4g07340 Schrenkiella parvula HOM05D004857 ORTHO05D005663 6.0e-56 221.9 412 39.1
Thhalv10001246m.g Eutrema salsugineum HOM05D004857 ORTHO05D005663 2.3e-55 219.9 419 37.5
Os12g0143400 Oryza sativa ssp. japonica HOM05D004857 ORTHO05D005663 3.9e-55 219.2 134 80.6
AL4G19270 Arabidopsis lyrata HOM05D004857 ORTHO05D005663 6.6e-55 218.4 410 39.3
Carub.0004s0646 Capsella rubella HOM05D004857 ORTHO05D005663 1.5e-54 217.2 418 37.1
Aa31LG5G9410 Aethionema arabicum HOM05D004857 ORTHO05D005663 2.5e-54 216.5 394 40.4
TPR.G27074 Trifolium pratense HOM05D004857 ORTHO05D005663 6.2e-53 211.8 417 38.1
AT2G26460 Arabidopsis thaliana HOM05D004857 ORTHO05D005663 3.1e-52 209.5 129 80.6
SMO266G0005 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 8.9e-52 208.0 425 36.7
CBR_g41264 Chara braunii HOM05D004857 ORTHO05D005663 2.6e-51 206.5 125 84.0
HanXRQChr12g0354251 Helianthus annuus HOM05D004857 ORTHO05D005663 2.2e-42 176.8 211 55.5
SMO270G0044 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 4.9e-42 175.6 128 68.0
Nn2g14232 Nelumbo nucifera HOM05D004857 ORTHO05D005663 9.9e-35 151.4 103 79.6
AagrBONN_evm.TU.Sc2ySwM_344.4798 Anthoceros agrestis HOM05D004857 ORTHO05D005663 1.5e-30 137.5 73 89.0
BcaB08g35309 Brassica carinata HOM05D004857 ORTHO05D005663 1.5e-30 137.5 134 58.2
BcaB08g35312 Brassica carinata HOM05D004857 ORTHO05D005663 1.5e-30 137.5 134 58.2
BcaB08g35314 Brassica carinata HOM05D004857 ORTHO05D005663 1.5e-30 137.5 134 58.2
Lsat_1_v5_gn_5_77300 Lactuca sativa HOM05D004857 ORTHO05D005663 1.3e-26 124.4 81 76.5
TAR626G1635 Trochodendron aralioides HOM05D001862 ORTHO05D005663 4.9e-26 122.5 66 87.9
BcaB08g35310 Brassica carinata HOM05D004857 ORTHO05D005663 2.1e-21 107.1 89 62.9
ECA234G1433 Erigeron canadensis HOM05D000959 ORTHO05D000775 8.1e-21 105.1 111 55.0
Dinv32013 Davidia involucrata HOM05D004857 ORTHO05D005663 2.6e-19 100.1 50 94.0
Atru.chr7.1769 Acer truncatum HOM05D004857 ORTHO05D005663 1.4e-17 94.4 64 68.8
BcaB08g35308 Brassica carinata HOM05D004857 ORTHO05D005663 3.5e-16 89.7 62 62.9
Pp3c19_4680 Physcomitrium patens HOM05D004857 ORTHO05D005663 7.9e-16 88.6 67 61.2
QL05p089308 Quercus lobata HOM05D004857 ORTHO05D005663 1.8e-15 87.4 54 77.8
BcaB08g35311 Brassica carinata HOM05D004857 ORTHO05D005663 1.7e-10 70.9 40 77.5
Cpa.g.sc3709.1 Carica papaya HOM05D004857 ORTHO05D005663 6.5e-10 68.9 47 68.1
SMO270G0035 Selaginella moellendorffii HOM05D004857 ORTHO05D005663 4.2e-09 66.2 65 50.8
ECA247G2383 Erigeron canadensis HOM05D004857 ORTHO05D005663 5.5e-09 65.9 33 84.8
PSO832G3983 Papaver somniferum HOM05D004857 ORTHO05D005663 3.6e-08 63.2 97 36.1
PSO541G5242 Papaver somniferum HOM05D004857 ORTHO05D005663 8.7e-07 58.5 29 86.2
Cre16.g688750 Chlamydomonas reinhardtii HOM05D004857 ORTHO05D005663 1.9e-06 57.4 124 35.5
PSO407G0399 Papaver somniferum HOM05D001929 ORTHO05D002426 3.3e-06 56.6 29 82.8


User provided reference genes

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