Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 4.9e-66 254.2 120 100.0
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-61 238.4 120 96.7
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-61 238.4 120 96.7
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-61 238.4 120 96.7
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-61 238.4 120 96.7
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-61 238.4 120 96.7
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-61 238.4 120 96.7
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-61 238.4 120 96.7
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-61 238.4 120 96.7
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-61 238.4 120 96.7
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 3.4e-59 231.5 120 92.5
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 3.8e-58 228.0 120 90.8
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.9e-57 225.7 120 90.0
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.9e-57 225.7 120 90.0
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 3.2e-57 224.9 120 92.5
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 3.2e-57 224.9 118 90.7
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 4.2e-57 224.6 120 89.2
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 4.2e-57 224.6 120 88.3
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.5e-57 224.2 120 88.3
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 7.1e-57 223.8 120 88.3
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 7.1e-57 223.8 120 88.3
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 9.3e-57 223.4 120 90.0
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 2.7e-56 221.9 120 87.5
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 3.5e-56 221.5 120 86.7
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 4.6e-56 221.1 120 87.5
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 1.0e-55 219.9 117 88.0
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 1.8e-55 219.2 120 89.2
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.3e-55 218.8 120 87.5
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 2.3e-55 218.8 119 85.7
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 3.0e-55 218.4 120 85.8
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 5.1e-55 217.6 120 85.8
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 5.1e-55 217.6 120 84.2
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 5.1e-55 217.6 120 85.0
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 8.7e-55 216.9 120 85.8
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 1.1e-54 216.5 120 86.7
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.5e-54 216.1 120 85.0
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 1.9e-54 215.7 120 85.0
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.9e-54 215.7 117 85.5
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.9e-54 215.7 117 85.5
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.9e-54 215.7 117 85.5
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.5e-54 215.3 117 85.5
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 4.3e-54 214.5 120 89.2
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 9.7e-54 213.4 120 83.3
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 1.6e-53 212.6 117 84.6
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.6e-53 212.6 120 85.0
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.6e-53 212.6 120 84.2
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 4.8e-53 211.1 117 84.6
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 4.8e-53 211.1 120 83.3
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.1e-52 209.9 117 83.8
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 3.1e-52 208.4 120 84.2
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 1.2e-51 206.5 120 83.3
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 1.2e-51 206.5 120 83.3
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 1.2e-51 206.5 120 83.3
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 1.2e-51 206.5 120 83.3
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 1.2e-51 206.5 120 83.3
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 1.2e-51 206.5 120 83.3
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 3.4e-51 204.9 120 82.5
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 4.5e-51 204.5 120 82.5
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 7.7e-51 203.8 120 82.5
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 7.7e-51 203.8 120 82.5
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 7.7e-51 203.8 120 82.5
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 7.7e-51 203.8 120 82.5
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 7.7e-51 203.8 120 82.5
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 1.0e-50 203.4 120 81.7
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 5.0e-50 201.1 119 81.5
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 6.5e-50 200.7 117 82.1
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 1.9e-49 199.1 120 80.8
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 4.2e-49 198.0 117 83.8
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 9.4e-49 196.8 113 81.4
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 4.6e-48 194.5 120 79.2
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 3.9e-47 191.4 119 79.0
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 2.0e-46 189.1 119 76.5
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 3.3e-46 188.3 120 74.2
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 2.2e-45 185.7 112 75.9
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 5.3e-44 181.0 95 92.6
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 5.3e-44 181.0 95 92.6
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 9.1e-44 180.3 103 85.4
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.5e-43 179.5 115 73.0
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 1.5e-43 179.5 119 70.6
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 2.6e-43 178.7 97 89.7
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 2.6e-43 178.7 97 89.7
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 2.6e-43 178.7 114 73.7
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 4.5e-43 177.9 120 78.3
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 4.5e-43 177.9 96 89.6
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.7e-42 176.0 98 84.7
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 1.7e-42 176.0 94 89.4
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.0e-42 174.5 98 83.7
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 8.5e-42 173.7 96 86.5
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.4e-41 172.9 113 71.7
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.2e-41 171.8 120 71.7
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 5.5e-41 171.0 98 81.6
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 1.6e-40 169.5 97 83.5
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 3.6e-40 168.3 94 84.0
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 3.6e-40 168.3 97 80.4
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 7.9e-40 167.2 100 78.0
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 1.0e-39 166.8 94 84.0
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 1.0e-39 166.8 90 87.8
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 2.3e-39 165.6 103 76.7
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 3.0e-39 165.2 94 83.0
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 3.9e-39 164.9 98 79.6
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 6.7e-39 164.1 95 80.0
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 6.7e-39 164.1 94 84.0
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 2.0e-38 162.5 94 80.9
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 2.6e-38 162.2 122 68.0
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.3e-38 161.8 87 87.4
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 5.7e-38 161.0 93 80.6
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 7.4e-38 160.6 95 78.9
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 7.4e-38 160.6 117 69.2
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 2.2e-37 159.1 92 80.4
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 6.3e-37 157.5 89 80.9
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.1e-36 156.8 92 79.3
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 9.1e-36 153.7 93 75.3
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.2e-34 149.1 86 80.2
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.8e-34 148.3 117 65.0
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 6.5e-34 147.5 88 79.5
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.5e-33 144.4 88 75.0
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 7.2e-33 144.1 98 71.4
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 7.2e-33 144.1 126 58.7
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 7.2e-33 144.1 86 83.7
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 8.0e-32 140.6 78 82.1
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 5.2e-31 137.9 84 77.4
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 8.8e-31 137.1 86 80.2
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 1.5e-30 136.3 81 77.8
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 2.8e-29 132.1 73 82.2
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 8.2e-29 130.6 68 83.8
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 1.4e-28 129.8 124 50.8
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.4e-28 129.0 79 75.9
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.4e-28 129.0 78 76.9
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.4e-28 129.0 78 76.9
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.4e-28 129.0 78 76.9
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.4e-28 129.0 78 76.9
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 2.4e-28 129.0 78 76.9
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.0e-28 127.5 77 76.6
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.0e-28 127.5 77 76.6
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.0e-28 127.5 77 76.6
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.0e-28 127.5 77 76.6
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 7.0e-28 127.5 77 76.6
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 9.1e-28 127.1 117 49.6
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 9.1e-28 127.1 66 87.9
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 1.0e-26 123.6 125 48.8
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 3.8e-26 121.7 118 57.6
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 7.2e-25 117.5 121 50.4
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 1.4e-23 113.2 59 88.1
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 1.5e-22 109.8 96 58.3
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 2.6e-22 109.0 64 79.7
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 5.7e-22 107.8 91 58.2
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 7.5e-22 107.5 70 67.1
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 1.3e-21 106.7 56 87.5
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 6.3e-21 104.4 64 81.2
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 8.3e-21 104.0 75 65.3
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 5.3e-20 101.3 62 77.4
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 7.0e-20 100.9 60 80.0
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 9.1e-20 100.5 61 80.3
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.0e-19 99.4 110 49.1
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 2.7e-19 99.0 111 45.0
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 3.5e-19 98.6 62 74.2
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 1.0e-18 97.1 87 56.3
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 1.5e-17 93.2 62 75.8
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 1.6e-16 89.7 55 80.0
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 2.7e-16 89.0 93 51.6
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 6.1e-16 87.8 61 73.8
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.0e-15 85.5 53 77.4
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.0e-15 85.5 53 77.4
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.5e-14 83.2 41 90.2
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 5.7e-14 81.3 49 79.6
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 1.7e-13 79.7 52 71.2
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 2.2e-13 79.3 57 73.7
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 4.1e-12 75.1 33 100.0
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 7.0e-12 74.3 47 74.5
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 9.1e-12 73.9 41 78.0
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 1.6e-11 73.2 34 91.2
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 1.6e-11 73.2 34 91.2
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 3.5e-11 72.0 49 71.4
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 2.3e-10 69.3 49 69.4
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 5.0e-10 68.2 41 80.5
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 8.6e-10 67.4 45 75.6
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.1e-08 62.8 37 67.6
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 2.1e-08 62.8 47 66.0
Migut.H00990 Erythranthe guttata HOM05D000806 ORTHO05D007429 1.0e-07 60.5 35 85.7
SGA_v2.0_scaffold213G42216 Striga asiatica HOM05D000806 ORTHO05D007429 3.0e-07 58.9 36 75.0
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 7.5e-06 54.3 34 79.4


User provided reference genes

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