Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0342451 Helianthus annuus HOM05D006964 ORTHO05D008861 9.6e-295 1016.1 539 100.0
Lsat_1_v5_gn_1_40040 Lactuca sativa HOM05D006964 ORTHO05D008861 3.4e-207 725.3 547 71.3
ECA234G0414 Erigeron canadensis HOM05D006964 ORTHO05D008861 4.0e-192 675.2 572 66.8
Potri.011G023800 Populus trichocarpa HOM05D006964 ORTHO05D008861 1.4e-184 650.2 561 63.5
QL04p064712 Quercus lobata HOM05D006964 ORTHO05D008861 6.9e-184 647.9 588 64.8
ClCG07G011010 Citrullus lanatus HOM05D006964 ORTHO05D008861 9.0e-184 647.5 566 63.6
QL04p064780 Quercus lobata HOM05D006964 ORTHO05D008861 5.8e-183 644.8 588 64.5
Cfa016256 Carpinus fangiana HOM05D006964 ORTHO05D008861 1.3e-182 643.7 558 65.2
Haze_00006 Corylus avellana HOM05D006964 ORTHO05D008861 1.1e-181 640.6 567 64.4
PGR031G2089 Punica granatum HOM05D006964 ORTHO05D008861 3.2e-181 639.0 585 61.7
Medtr5g098850 Medicago truncatula HOM05D006964 ORTHO05D008861 2.7e-180 636.0 548 64.2
Sabra11G0014800 Salix brachista HOM05D006964 ORTHO05D008861 3.5e-180 635.6 559 62.6
Lj1A623T74 Lonicera japonica HOM05D006964 ORTHO05D008861 3.9e-179 632.1 567 64.4
Sed0000140 Sechium edule HOM05D006964 ORTHO05D008861 6.7e-179 631.3 566 62.5
Lalb_Chr10g0101591 Lupinus albus HOM05D006964 ORTHO05D008861 5.6e-178 628.2 534 64.0
MBI18_g18636_MAGBIO Magnolia biondii HOM05D006964 ORTHO05D008861 2.1e-177 626.3 549 62.5
CAN.G843.21 Capsicum annuum HOM05D006964 ORTHO05D008861 4.0e-176 622.1 597 58.0
arahy.Tifrunner.gnm1.ann1.3RSR9Y Arachis hypogaea HOM05D006964 ORTHO05D008861 5.3e-176 621.7 566 61.0
Ca_06492_v3 Cicer arietinum L. HOM05D006964 ORTHO05D008861 6.9e-176 621.3 569 64.0
Gohir.D08G060500 Gossypium hirsutum HOM05D006964 ORTHO05D008861 6.9e-176 621.3 567 64.4
Gohir.A08G050700 Gossypium hirsutum HOM05D006964 ORTHO05D008861 9.0e-176 620.9 573 63.7
Atru.chr8.1035 Acer truncatum HOM05D006964 ORTHO05D008861 1.2e-175 620.5 567 61.0
arahy.Tifrunner.gnm1.ann1.EIVX2Z Arachis hypogaea HOM05D006964 ORTHO05D008861 1.2e-175 620.5 565 61.1
Nitab4.5_0000660g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 1.5e-175 620.2 581 59.6
Thhalv10009719m.g Eutrema salsugineum HOM05D006964 ORTHO05D008861 2.6e-175 619.4 531 63.5
Nn7g38387 Nelumbo nucifera HOM05D006964 ORTHO05D008861 2.6e-175 619.4 592 58.6
Gorai.004G062600 Gossypium raimondii HOM05D006964 ORTHO05D008861 3.4e-175 619.0 567 64.2
Solyc03g118320.1 Solanum lycopersicum HOM05D006964 ORTHO05D008861 4.5e-175 618.6 590 58.1
PGSC0003DMG400014180 Solanum tuberosum HOM05D006964 ORTHO05D008861 4.5e-175 618.6 593 58.5
Glyma.14G003100 Glycine max HOM05D006964 ORTHO05D008861 5.8e-175 618.2 559 62.4
Sopen03g037220 Solanum pennellii HOM05D006964 ORTHO05D008861 5.8e-175 618.2 590 58.0
TPR.G35899 Trifolium pratense HOM05D006964 ORTHO05D008861 5.8e-175 618.2 580 60.0
THA.LOC104827506 Tarenaya hassleriana HOM05D006964 ORTHO05D008861 7.6e-175 617.8 541 62.3
Manes.16G000700 Manihot esculenta HOM05D006964 ORTHO05D008861 1.3e-174 617.1 557 61.8
Aqoxy7G03560 Aquilegia oxysepala HOM05D006964 ORTHO05D008861 3.8e-174 615.5 591 61.1
TAR464G0001 Trochodendron aralioides HOM05D006964 ORTHO05D008861 3.8e-174 615.5 592 61.8
BcaC06g35275 Brassica carinata HOM05D006964 ORTHO05D008861 6.5e-174 614.8 538 62.6
BolC7t42303H Brassica oleracea HOM05D006964 ORTHO05D008861 6.5e-174 614.8 538 62.6
Nitab4.5_0000663g0200 Nicotiana tabacum HOM05D006964 ORTHO05D008861 6.5e-174 614.8 608 57.7
Ciclev10011398m.g Citrus clementina HOM05D006964 ORTHO05D008861 2.5e-173 612.8 568 60.6
Oeu061991.1 Olea europaea HOM05D006964 ORTHO05D008861 5.5e-173 611.7 551 61.0
COL.COLO4_20003 Corchorus olitorius HOM05D006964 ORTHO05D008861 7.1e-173 611.3 584 59.6
Aa31LG7G9960 Aethionema arabicum HOM05D006964 ORTHO05D008861 9.3e-173 610.9 533 62.5
LjContig00081g0000792 Lotus japonicus HOM05D006964 ORTHO05D008861 9.3e-173 610.9 578 61.4
Dinv35124 Davidia involucrata HOM05D006964 ORTHO05D008861 1.2e-172 610.5 569 62.6
AT1G24290 Arabidopsis thaliana HOM05D006964 ORTHO05D008861 1.6e-172 610.1 538 61.7
Sp1g23470 Schrenkiella parvula HOM05D006964 ORTHO05D008861 1.6e-172 610.1 539 61.2
C07p17970 Brassica napus HOM05D006964 ORTHO05D008861 2.1e-172 609.8 536 62.7
CiPaw.05G264600 Carya illinoinensis HOM05D006964 ORTHO05D008861 2.1e-172 609.8 573 61.3
Hma1.2p1_0391F.1_g142860 Hydrangea macrophylla HOM05D006964 ORTHO05D008861 2.1e-172 609.8 601 58.6
RcHm_v2.0_Chr7g0233321 Rosa chinensis HOM05D006964 ORTHO05D008861 2.1e-172 609.8 549 60.7
Psat2g001680 Pisum sativum HOM05D006964 ORTHO05D008861 3.5e-172 609.0 440 71.1
Eucgr.A00951 Eucalyptus grandis HOM05D006964 ORTHO05D008861 4.6e-172 608.6 606 60.2
A07p12030 Brassica napus HOM05D006964 ORTHO05D008861 1.0e-171 607.4 537 62.6
Carub.0001s2577 Capsella rubella HOM05D006964 ORTHO05D008861 1.0e-171 607.4 533 62.1
Thecc.01G176000 Theobroma cacao HOM05D006964 ORTHO05D008861 1.0e-171 607.4 587 60.8
BraA07t28989Z Brassica rapa HOM05D006964 ORTHO05D008861 1.3e-171 607.1 537 62.4
Nitab4.5_0004302g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 1.3e-171 607.1 570 59.3
CsaV3_4G007230 Cucumis sativus L. HOM05D006964 ORTHO05D008861 1.8e-171 606.7 446 69.7
Cpa.g.sc332.3 Carica papaya HOM05D006964 ORTHO05D008861 3.9e-171 605.5 548 61.5
Rhsim02G0171800 Rhododendron simsii HOM05D006964 ORTHO05D008861 3.9e-171 605.5 573 60.7
BcaB03g13997 Brassica carinata HOM05D006964 ORTHO05D008861 5.1e-171 605.1 531 62.3
FvH4_5g33930 Fragaria vesca HOM05D006964 ORTHO05D008861 2.5e-170 602.8 552 61.8
Phvul.008G290000 Phaseolus vulgaris HOM05D006964 ORTHO05D008861 9.7e-170 600.9 567 60.0
vmacro11021 Vaccinium macrocarpon HOM05D006964 ORTHO05D008861 1.6e-169 600.1 583 59.3
SHI28197 Sapria himalayana HOM05D006964 ORTHO05D008861 2.8e-169 599.4 553 60.6
AL1G40630 Arabidopsis lyrata HOM05D006964 ORTHO05D008861 1.4e-168 597.0 535 61.7
FAN18G1087 Fragaria x ananassa HOM05D006964 ORTHO05D008861 2.4e-168 596.3 536 60.8
EL10Ac6g15329 Beta vulgaris HOM05D006964 ORTHO05D008861 6.9e-168 594.7 568 59.5
FAN08G0714 Fragaria x ananassa HOM05D006964 ORTHO05D008861 6.9e-168 594.7 536 60.6
Lj1C622G7 Lonicera japonica HOM05D006964 ORTHO05D008861 9.0e-168 594.3 442 70.8
CARHR026810 Cardamine hirsuta HOM05D006964 ORTHO05D008861 1.2e-167 594.0 536 61.0
Peaxi162Scf00314g00515 Petunia axillaris HOM05D006964 ORTHO05D008861 2.0e-167 593.2 559 59.0
MD03G1299000 Malus domestica HOM05D006964 ORTHO05D008861 2.6e-167 592.8 582 57.9
GSVIVG01015905001 Vitis vinifera HOM05D006964 ORTHO05D008861 3.4e-167 592.4 418 73.7
unitig_699.g19570 Utricularia gibba HOM05D006964 ORTHO05D008861 5.9e-167 591.7 528 60.0
DCAR_005902 Daucus carota HOM05D006964 ORTHO05D008861 3.8e-166 589.0 559 59.4
SGA_v2.0_scaffold73G24408 Striga asiatica HOM05D006964 ORTHO05D008861 5.5e-165 585.1 560 59.5
Ah.02g121270 Amaranthus hybridus HOM05D006964 ORTHO05D008861 1.6e-164 583.6 560 59.8
AUR62017863 Chenopodium quinoa HOM05D006964 ORTHO05D008861 1.6e-164 583.6 544 59.9
Cc11_g00270 Coffea canephora HOM05D006964 ORTHO05D008861 1.3e-161 573.9 481 64.4
Sc07g0001890 Simmondsia chinensis HOM05D006964 ORTHO05D008861 1.7e-161 573.5 599 57.3
CDE02G0076 Ceratophyllum demersum HOM05D006964 ORTHO05D008861 1.1e-160 570.9 549 58.3
Nitab4.5_0002450g0010 Nicotiana tabacum HOM05D006964 ORTHO05D008861 4.4e-154 548.9 609 53.4
ATR0763G192 Amborella trichopoda HOM05D006964 ORTHO05D008861 1.2e-151 540.8 609 51.4
AUR62003549 Chenopodium quinoa HOM05D006964 ORTHO05D008861 1.4e-149 533.9 532 57.1
Actinidia35156 Actinidia chinensis HOM05D006964 ORTHO05D008861 3.9e-147 525.8 461 62.3
SEGI_30607 Sequoiadendron giganteum HOM05D006964 ORTHO05D008861 1.2e-140 504.2 572 50.5
SMO116G0181 Selaginella moellendorffii HOM05D006964 ORTHO05D008861 1.4e-136 490.7 423 59.6
HPP92_016414 Vanilla planifolia HOM05D006964 ORTHO05D008861 3.2e-133 479.6 516 51.9
Mapoly0100s0005 Marchantia polymorpha HOM05D006964 ORTHO05D008861 6.6e-118 428.7 619 44.3
Pp3c24_11680 Physcomitrium patens HOM05D006964 ORTHO05D008861 4.1e-112 409.5 583 44.3
HPP92_016337 Vanilla planifolia HOM05D006964 ORTHO05D008861 3.5e-111 406.4 462 51.1
Pp3c23_21270 Physcomitrium patens HOM05D006964 ORTHO05D008861 5.6e-101 372.5 625 39.0
Cfa024934 Carpinus fangiana HOM05D006964 ORTHO05D008861 2.7e-87 327.0 430 44.7
Nitab4.5_0000843g0040 Nicotiana tabacum HOM05D006964 ORTHO05D008861 9.6e-85 318.5 238 66.4
PSO677G0001 Papaver somniferum HOM05D006964 ORTHO05D008861 1.8e-83 314.3 240 67.1
Haze_26752 Corylus avellana HOM05D006964 ORTHO05D008861 4.9e-81 306.2 418 42.6
Ca_28576_v3 Cicer arietinum L. HOM05D006964 ORTHO05D008861 2.4e-80 303.9 428 42.8
SalBow7G3142 Salvia bowleyana HOM05D006964 ORTHO05D008861 9.0e-67 258.8 351 48.1
SalBow7G2824 Salvia bowleyana HOM05D006964 ORTHO05D008861 1.0e-65 255.4 155 78.1
Eucgr.F00067 Eucalyptus grandis HOM05D006964 ORTHO05D008861 1.8e-43 181.4 144 65.3
Nn1g06845 Nelumbo nucifera HOM05D006964 ORTHO05D008861 1.7e-41 174.9 140 62.9
Actinidia18866 Actinidia chinensis HOM05D006964 ORTHO05D008861 5.0e-41 173.3 236 45.8
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.8e-38 164.9 273 43.6
Migut.M00128 Erythranthe guttata HOM05D006964 ORTHO05D008861 2.0e-37 161.4 255 49.4
PGSC0003DMG400021041 Solanum tuberosum HOM05D006964 ORTHO05D008861 2.4e-27 127.9 78 75.6
Medtr6g036640 Medicago truncatula HOM05D006964 ORTHO05D008861 9.1e-27 125.9 126 59.5
Pp3c7_25960 Physcomitrium patens HOM05D006964 ORTHO05D008861 4.4e-21 107.1 101 53.5
MD11G1318300 Malus domestica HOM05D006964 ORTHO05D008861 2.2e-20 104.8 64 76.6
SEGI_03426 Sequoiadendron giganteum HOM05D006964 ORTHO05D008861 1.3e-12 79.0 100 46.0
CBR_g61476 Chara braunii HOM05D001470 ORTHO05D006756 1.5e-08 65.5 237 24.9
Cre06.g251800 Chlamydomonas reinhardtii HOM05D001470 ORTHO05D006430 9.5e-08 62.8 256 26.2
PSO170G5389 Papaver somniferum HOM05D001195 ORTHO05D012394 1.6e-07 62.0 196 30.1
Cfa025569 Carpinus fangiana HOM05D001470 ORTHO05D006756 2.1e-07 61.6 374 23.5
HanXRQChr11g0326191 Helianthus annuus HOM05D001470 ORTHO05D006430 2.1e-07 61.6 248 24.6
CDE04G2297 Ceratophyllum demersum HOM05D001195 ORTHO05D001138 2.8e-07 61.2 275 28.0
Aqoxy1G02492 Aquilegia oxysepala HOM05D006964 ORTHO05D008861 3.6e-07 60.8 75 45.3
CBR_g49986 Chara braunii HOM05D001470 ORTHO05D006430 4.7e-07 60.5 232 24.6
Thhalv10008129m.g Eutrema salsugineum HOM05D001470 ORTHO05D006430 4.7e-07 60.5 252 25.0
PSO017G4404 Papaver somniferum HOM05D001195 ORTHO05D012394 4.7e-07 60.5 214 28.0
Sp1g19230 Schrenkiella parvula HOM05D001470 ORTHO05D006430 4.7e-07 60.5 252 25.0
Carub.0002s2436 Capsella rubella HOM05D001470 ORTHO05D006756 6.1e-07 60.1 221 28.1
Cpa.g.sc74.70 Carica papaya HOM05D001470 ORTHO05D006967 6.1e-07 60.1 224 24.6
Ciclev10001597m.g Citrus clementina HOM05D001470 ORTHO05D006756 6.1e-07 60.1 220 26.4
THA.LOC104800216 Tarenaya hassleriana HOM05D001470 ORTHO05D006430 6.1e-07 60.1 245 24.1
CARHR022040 Cardamine hirsuta HOM05D001470 ORTHO05D006430 1.0e-06 59.3 243 24.3
ClCG11G015940 Citrullus lanatus HOM05D001470 ORTHO05D006430 1.0e-06 59.3 247 24.3
CsaV3_4G028050 Cucumis sativus L. HOM05D001470 ORTHO05D006430 1.0e-06 59.3 247 23.9
Manes.02G166700 Manihot esculenta HOM05D001470 ORTHO05D006430 1.0e-06 59.3 234 23.9
PSO447G0240 Papaver somniferum HOM05D001195 ORTHO05D001138 1.0e-06 59.3 198 26.3
Sed0019306 Sechium edule HOM05D001470 ORTHO05D006430 1.0e-06 59.3 247 23.9
AL1G34850 Arabidopsis lyrata HOM05D001470 ORTHO05D006430 1.4e-06 58.9 252 24.6
Cfa018559 Carpinus fangiana HOM05D001470 ORTHO05D006430 1.4e-06 58.9 245 24.9
CARHR070990 Cardamine hirsuta HOM05D001470 ORTHO05D006756 1.8e-06 58.5 227 27.3
Aa31LG4G7480 Aethionema arabicum HOM05D001470 ORTHO05D006756 2.3e-06 58.2 245 26.9
Aa31LG7G5660 Aethionema arabicum HOM05D001470 ORTHO05D006430 2.3e-06 58.2 234 23.9
Aqoxy5G02375 Aquilegia oxysepala HOM05D001470 ORTHO05D006430 2.3e-06 58.2 243 25.9
arahy.Tifrunner.gnm1.ann1.0P0L33 Arachis hypogaea HOM05D001470 ORTHO05D006756 2.3e-06 58.2 238 25.6
Gohir.A05G236800 Gossypium hirsutum HOM05D001470 ORTHO05D006756 2.3e-06 58.2 221 26.7
Hma1.2p1_0129F.1_g060430 Hydrangea macrophylla HOM05D001470 ORTHO05D006756 2.3e-06 58.2 228 25.9
Lalb_Chr08g0241231 Lupinus albus HOM05D001470 ORTHO05D006430 2.3e-06 58.2 245 23.7
THA.LOC104800207 Tarenaya hassleriana HOM05D001470 ORTHO05D006756 2.3e-06 58.2 220 25.0
arahy.Tifrunner.gnm1.ann1.D58UPY Arachis hypogaea HOM05D001470 ORTHO05D006756 3.0e-06 57.8 239 26.4
BraA08t34817Z Brassica rapa HOM05D001470 ORTHO05D006430 3.0e-06 57.8 248 24.6
Pp3s356_30 Physcomitrium patens HOM05D006964 ORTHO05D317654 3.0e-06 57.8 278 25.5
RcHm_v2.0_Chr6g0296411 Rosa chinensis HOM05D001470 ORTHO05D006430 3.0e-06 57.8 243 24.7
AagrBONN_evm.TU.Sc2ySwM_344.1249 Anthoceros agrestis HOM05D001470 ORTHO05D006430 4.0e-06 57.4 234 24.8
BcaB07g32165 Brassica carinata HOM05D001470 ORTHO05D006430 4.0e-06 57.4 245 23.7
BcaC05g26087 Brassica carinata HOM05D001470 ORTHO05D006430 4.0e-06 57.4 245 23.7
A06p17770 Brassica napus HOM05D001470 ORTHO05D006430 4.0e-06 57.4 245 23.7
A08p28860 Brassica napus HOM05D001470 ORTHO05D006430 4.0e-06 57.4 248 23.8
C08p21000 Brassica napus HOM05D001470 ORTHO05D006430 4.0e-06 57.4 248 24.6
BolC5t30765H Brassica oleracea HOM05D001470 ORTHO05D006430 4.0e-06 57.4 245 23.7
BraA06t24869Z Brassica rapa HOM05D001470 ORTHO05D006430 4.0e-06 57.4 245 23.7
Potri.002G081200 Populus trichocarpa HOM05D001470 ORTHO05D006756 4.0e-06 57.4 226 25.2
MSTRG.25372 Avicennia marina HOM05D001470 ORTHO05D006756 5.2e-06 57.0 231 25.1
Duzib093G1303 Durio zibethinus HOM05D001470 ORTHO05D006430 5.2e-06 57.0 234 24.8
Thhalv10018756m.g Eutrema salsugineum HOM05D001470 ORTHO05D006756 5.2e-06 57.0 227 26.4
Gohir.A06G046900 Gossypium hirsutum HOM05D001470 ORTHO05D006430 5.2e-06 57.0 245 24.1
Gohir.D06G047200 Gossypium hirsutum HOM05D001470 ORTHO05D006430 5.2e-06 57.0 245 24.1
Gorai.010G052800 Gossypium raimondii HOM05D001470 ORTHO05D006430 5.2e-06 57.0 245 24.1
MD15G1344500 Malus domestica HOM05D001470 ORTHO05D006430 5.2e-06 57.0 232 25.0
Mapoly0014s0096 Marchantia polymorpha HOM05D001470 ORTHO05D006430 5.2e-06 57.0 243 23.0
Sp5g32630 Schrenkiella parvula HOM05D001470 ORTHO05D006756 5.2e-06 57.0 227 26.4
Atru.chr13.1511 Acer truncatum HOM05D001470 ORTHO05D006756 6.8e-06 56.6 220 24.5
arahy.Tifrunner.gnm1.ann1.414R5A Arachis hypogaea HOM05D001470 ORTHO05D006967 6.8e-06 56.6 227 25.6
C05p20660 Brassica napus HOM05D001470 ORTHO05D006430 6.8e-06 56.6 241 23.7
CSS0028817 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006756 6.8e-06 56.6 220 25.0
Glyma.06G116000 Glycine max HOM05D001470 ORTHO05D006430 6.8e-06 56.6 234 23.9
SMO308G0051 Selaginella moellendorffii HOM05D001470 ORTHO05D006430 6.8e-06 56.6 250 26.0
A07p27990 Brassica napus HOM05D001470 ORTHO05D006756 8.9e-06 56.2 241 25.7
Carub.0001s2112 Capsella rubella HOM05D001470 ORTHO05D006430 8.9e-06 56.2 245 23.7
Eucgr.F04342 Eucalyptus grandis HOM05D001470 ORTHO05D006756 8.9e-06 56.2 239 24.7
Lj1g0008455 Lotus japonicus HOM05D001470 ORTHO05D006756 8.9e-06 56.2 230 28.3
Nitab4.5_0005296g0020 Nicotiana tabacum HOM05D001470 ORTHO05D006756 8.9e-06 56.2 220 25.5
PSO210G3331 Papaver somniferum HOM05D001195 ORTHO05D001138 8.9e-06 56.2 198 25.8


User provided reference genes

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