Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0322921 Helianthus annuus HOM05D003044 ORTHO05D001869 8.4e-145 517.7 419 100.0
HanXRQChr07g0201481 Helianthus annuus HOM05D003044 ORTHO05D001869 1.4e-91 340.9 426 66.7
HanXRQChr07g0194411 Helianthus annuus HOM05D003044 ORTHO05D001869 2.6e-85 320.1 503 65.6
HanXRQChr07g0195181 Helianthus annuus HOM05D003044 ORTHO05D001869 1.6e-74 284.3 413 62.0
Lsat_1_v5_gn_2_106321 Lactuca sativa HOM05D003044 ORTHO05D001869 3.6e-23 113.6 436 37.8
Lsat_1_v5_gn_8_21821 Lactuca sativa HOM05D003044 ORTHO05D001869 1.9e-19 101.3 474 36.9
CSS0031943 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 7.1e-19 99.4 194 46.4
Lj2A36T50 Lonicera japonica HOM05D003044 ORTHO05D001869 7.1e-19 99.4 222 40.5
Dinv03806 Davidia involucrata HOM05D003044 ORTHO05D001869 1.2e-18 98.6 179 44.1
MELO3C019915.2 Cucumis melo HOM05D003044 ORTHO05D001869 4.6e-18 96.7 144 50.0
CsaV3_6G004440 Cucumis sativus L. HOM05D003044 ORTHO05D001869 4.6e-18 96.7 144 50.0
HanXRQChr08g0217351 Helianthus annuus HOM05D003044 ORTHO05D001869 4.6e-18 96.7 168 53.6
EL10Ac8g19444 Beta vulgaris HOM05D003044 ORTHO05D001869 3.9e-17 93.6 152 45.4
Migut.F01554 Erythranthe guttata HOM05D003044 ORTHO05D001869 6.6e-17 92.8 142 45.8
Lj3A920T29 Lonicera japonica HOM05D003044 ORTHO05D001869 1.1e-16 92.0 223 39.0
ECA233G5261 Erigeron canadensis HOM05D003044 ORTHO05D001869 3.3e-16 90.5 489 38.4
Ca_18140_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 5.6e-16 89.7 179 44.7
GSVIVG01034601001 Vitis vinifera HOM05D003044 ORTHO05D001869 9.6e-16 89.0 192 41.7
Nitab4.5_0000687g0150 Nicotiana tabacum HOM05D003044 ORTHO05D001869 1.3e-15 88.6 134 49.3
Phvul.007G233800 Phaseolus vulgaris HOM05D003044 ORTHO05D001869 1.3e-15 88.6 146 45.9
Manes.07G084000 Manihot esculenta HOM05D003044 ORTHO05D001869 1.6e-15 88.2 195 42.6
Oeu015285.1 Olea europaea HOM05D003044 ORTHO05D001869 1.6e-15 88.2 189 40.7
Gohir.D04G019000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 2.8e-15 87.4 242 36.8
Hund22391 Selenicereus undatus HOM05D003044 ORTHO05D001869 3.6e-15 87.0 171 45.0
Gohir.A05G396000 Gossypium hirsutum HOM05D003044 ORTHO05D001869 4.8e-15 86.7 316 33.2
Gorai.012G022800 Gossypium raimondii HOM05D003044 ORTHO05D001869 4.8e-15 86.7 174 43.1
QL04p048819 Quercus lobata HOM05D003044 ORTHO05D001869 4.8e-15 86.7 151 49.0
QL04p049165 Quercus lobata HOM05D003044 ORTHO05D001869 4.8e-15 86.7 151 49.0
MSTRG.27548 Avicennia marina HOM05D003044 ORTHO05D001869 8.1e-15 85.9 194 39.2
Atru.chr12.1090 Acer truncatum HOM05D003044 ORTHO05D001869 1.1e-14 85.5 182 43.4
Gohir.A05G396100 Gossypium hirsutum HOM05D003044 ORTHO05D001869 1.4e-14 85.1 170 43.5
Hma1.2p1_0098F.1_g048320 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 1.4e-14 85.1 129 48.8
PGSC0003DMG400023499 Solanum tuberosum HOM05D003044 ORTHO05D001869 1.8e-14 84.7 121 50.4
Aqoxy2G00627 Aquilegia oxysepala HOM05D003044 ORTHO05D001869 3.1e-14 84.0 179 40.2
Gorai.012G022400 Gossypium raimondii HOM05D003044 ORTHO05D001869 6.9e-14 82.8 141 44.7
Sopen05g033570 Solanum pennellii HOM05D003044 ORTHO05D001869 9.0e-14 82.4 161 44.1
PSO384G0573 Papaver somniferum HOM05D003044 ORTHO05D001869 1.2e-13 82.0 202 42.6
VMungo0720G1731 Vigna mungo HOM05D003044 ORTHO05D001869 4.5e-13 80.1 149 41.6
Gohir.D04G018900 Gossypium hirsutum HOM05D003044 ORTHO05D001869 5.8e-13 79.7 167 40.1
Cpa.g.sc33.124 Carica papaya HOM05D003044 ORTHO05D001869 7.6e-13 79.3 116 48.3
Gorai.012G022500 Gossypium raimondii HOM05D003044 ORTHO05D001869 7.6e-13 79.3 165 41.8
Ciclev10014057m.g Citrus clementina HOM05D003044 ORTHO05D001869 1.3e-12 78.6 131 43.5
Lalb_Chr19g0128991 Lupinus albus HOM05D003044 ORTHO05D001869 1.3e-12 78.6 124 43.5
Manes.10G059500 Manihot esculenta HOM05D003044 ORTHO05D001869 1.3e-12 78.6 218 39.4
Sabra08G0009300 Salix brachista HOM05D003044 ORTHO05D001869 1.3e-12 78.6 190 40.0
Ah.14g085720 Amaranthus hybridus HOM05D003044 ORTHO05D001869 1.7e-12 78.2 134 47.8
PGR044G1498 Punica granatum HOM05D003044 ORTHO05D001869 1.7e-12 78.2 137 46.0
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 2.2e-12 77.8 152 42.1
Lj6g0024518 Lotus japonicus HOM05D003044 ORTHO05D001869 6.4e-12 76.3 165 41.2
Oeu020482.1 Olea europaea HOM05D003044 ORTHO05D001869 6.4e-12 76.3 171 42.7
Rhsim09G0140200 Rhododendron simsii HOM05D003044 ORTHO05D001869 6.4e-12 76.3 172 39.5
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 6.4e-12 76.3 506 29.1
SalBow6G6809 Salvia bowleyana HOM05D003044 ORTHO05D001869 8.4e-12 75.9 193 39.9
Cc02_g09260 Coffea canephora HOM05D003044 ORTHO05D001869 1.1e-11 75.5 155 43.2
ECA238G0186 Erigeron canadensis HOM05D003044 ORTHO05D001869 1.1e-11 75.5 413 33.9
Nn6g34615 Nelumbo nucifera HOM05D003044 ORTHO05D001869 1.1e-11 75.5 131 42.7
Duzib106G0590 Durio zibethinus HOM05D003044 ORTHO05D001869 1.4e-11 75.1 245 35.5
Lalb_Chr01g0010681 Lupinus albus HOM05D003044 ORTHO05D001869 1.4e-11 75.1 167 39.5
Nitab4.5_0005247g0010 Nicotiana tabacum HOM05D003044 ORTHO05D001869 1.9e-11 74.7 117 47.9
Cfa010501 Carpinus fangiana HOM05D003044 ORTHO05D001869 2.4e-11 74.3 134 44.0
CDE04G3330 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 2.4e-11 74.3 108 46.3
CiPaw.13G045500 Carya illinoinensis HOM05D003044 ORTHO05D001869 3.2e-11 73.9 164 45.1
Sabra10G0191200 Salix brachista HOM05D003044 ORTHO05D001869 3.2e-11 73.9 247 34.0
arahy.Tifrunner.gnm1.ann1.JKR5UJ Arachis hypogaea HOM05D003044 ORTHO05D001869 4.2e-11 73.6 160 45.0
arahy.Tifrunner.gnm1.ann1.Y6HWEI Arachis hypogaea HOM05D003044 ORTHO05D001869 4.2e-11 73.6 160 45.0
Psat6g171360 Pisum sativum HOM05D003044 ORTHO05D001869 4.2e-11 73.6 206 36.9
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 4.2e-11 73.6 109 46.8
Dinv04420 Davidia involucrata HOM05D003044 ORTHO05D001869 5.4e-11 73.2 506 36.8
Glyma.20G195200 Glycine max HOM05D003044 ORTHO05D001869 5.4e-11 73.2 178 42.1
PSO339G5639 Papaver somniferum HOM05D003044 ORTHO05D001869 5.4e-11 73.2 184 41.3
Haze_03430 Corylus avellana HOM05D003044 ORTHO05D001869 9.3e-11 72.4 139 46.0
CARHR085230 Cardamine hirsuta HOM05D003044 ORTHO05D001869 1.2e-10 72.0 142 42.3
Glyma.10G120200 Glycine max HOM05D003044 ORTHO05D001869 1.2e-10 72.0 172 40.1
AT3G10650 Arabidopsis thaliana HOM05D003044 ORTHO05D001869 1.6e-10 71.6 135 43.0
Ca_10422_v3 Cicer arietinum L. HOM05D003044 ORTHO05D001869 1.6e-10 71.6 221 37.1
Glyma.10G194700 Glycine max HOM05D003044 ORTHO05D001869 1.6e-10 71.6 219 36.5
AUR62033063 Chenopodium quinoa HOM05D003044 ORTHO05D001869 2.1e-10 71.2 173 39.3
MBI05_g36784_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 2.7e-10 70.9 130 44.6
Medtr1g040610 Medicago truncatula HOM05D003044 ORTHO05D001869 2.7e-10 70.9 192 42.7
AUR62042206 Chenopodium quinoa HOM05D003044 ORTHO05D001869 4.6e-10 70.1 123 43.1
DCAR_018987 Daucus carota HOM05D003044 ORTHO05D001869 4.6e-10 70.1 231 35.1
Migut.F00829 Erythranthe guttata HOM05D003044 ORTHO05D001869 4.6e-10 70.1 148 39.9
Solyc05g055130.1 Solanum lycopersicum HOM05D003044 ORTHO05D001869 7.9e-10 69.3 101 48.5
Ah.09g231710 Amaranthus hybridus HOM05D003044 ORTHO05D001869 1.0e-09 68.9 159 40.3
CAN.G765.14 Capsicum annuum HOM05D003044 ORTHO05D001869 1.0e-09 68.9 176 37.5
Lj5g0009221 Lotus japonicus HOM05D003044 ORTHO05D001869 1.3e-09 68.6 118 44.9
Os03g0788300 Oryza sativa ssp. japonica HOM05D003044 ORTHO05D001869 1.8e-09 68.2 153 39.9
Sed0010208 Sechium edule HOM05D003044 ORTHO05D001869 1.8e-09 68.2 121 43.0
Zm00001eb060090 Zea mays HOM05D003044 ORTHO05D001869 2.3e-09 67.8 147 44.9
Duzib114G0797 Durio zibethinus HOM05D003044 ORTHO05D001869 3.0e-09 67.4 179 36.9
Hma1.2p1_0098F.1_g048290 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 3.0e-09 67.4 175 41.1
THA.LOC104816476 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 3.9e-09 67.0 120 41.7
Thecc.10G119700 Theobroma cacao HOM05D003044 ORTHO05D001869 5.1e-09 66.6 129 40.3
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 6.7e-09 66.2 160 42.5
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 8.7e-09 65.9 504 30.4
CANSAT56G3871 Cannabis sativa HOM05D003044 ORTHO05D001869 1.1e-08 65.5 185 38.9
Prupe.2G074800 Prunus persica HOM05D003044 ORTHO05D001869 1.9e-08 64.7 152 45.4
CiPaw.14G036200 Carya illinoinensis HOM05D003044 ORTHO05D001869 2.5e-08 64.3 154 40.3
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 2.5e-08 64.3 198 39.9
VMungo0720G0604 Vigna mungo HOM05D003044 ORTHO05D001869 2.5e-08 64.3 153 37.3
CSS0000792 Camellia sinensis var. sinensis HOM05D003044 ORTHO05D001869 3.3e-08 63.9 119 46.2
ClCG08G008450 Citrullus lanatus HOM05D003044 ORTHO05D001869 4.3e-08 63.5 448 27.7
CAN.G1433.1 Capsicum annuum HOM05D003044 ORTHO05D001869 5.6e-08 63.2 167 37.1
Psat6g049400 Pisum sativum HOM05D003044 ORTHO05D001869 5.6e-08 63.2 183 34.4
HanXRQChr02g0049311 Helianthus annuus HOM05D003044 ORTHO05D001869 7.4e-08 62.8 423 31.0
Potri.008G015350 Populus trichocarpa HOM05D003044 ORTHO05D001869 7.4e-08 62.8 204 37.7
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 9.6e-08 62.4 174 36.8
SHI21256 Sapria himalayana HOM05D003044 ORTHO05D001869 1.3e-07 62.0 110 41.8
Lalb_Chr02g0150891 Lupinus albus HOM05D003044 ORTHO05D001869 1.6e-07 61.6 199 37.7
SGA_v2.0_scaffold13G06427 Striga asiatica HOM05D003044 ORTHO05D001869 1.6e-07 61.6 176 38.1
Lalb_Chr21g0312741 Lupinus albus HOM05D003044 ORTHO05D001869 2.1e-07 61.2 239 34.3
THA.LOC104823155 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 2.1e-07 61.2 130 43.8
Potri.008G014800 Populus trichocarpa HOM05D003044 ORTHO05D001869 2.8e-07 60.8 188 41.5
TWI15G1087 Tripterygium wilfordii HOM05D003044 ORTHO05D001869 2.8e-07 60.8 147 42.2
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 2.8e-07 60.8 122 43.4
Phvul.007G136500 Phaseolus vulgaris HOM05D003044 ORTHO05D001869 3.7e-07 60.5 134 37.3
Nitab4.5_0001781g0070 Nicotiana tabacum HOM05D003044 ORTHO05D001869 6.2e-07 59.7 133 38.3
Medtr1g090340 Medicago truncatula HOM05D003044 ORTHO05D001869 8.1e-07 59.3 203 33.0
Gohir.D04G019080 Gossypium hirsutum HOM05D003044 ORTHO05D001869 1.8e-06 58.2 140 41.4
Sc12g0008100 Simmondsia chinensis HOM05D003044 ORTHO05D001869 1.8e-06 58.2 147 39.5
Psat4g227200 Pisum sativum HOM05D003044 ORTHO05D001869 3.1e-06 57.4 101 41.6
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 3.1e-06 57.4 166 35.5
AL3G22120 Arabidopsis lyrata HOM05D003044 ORTHO05D001869 5.3e-06 56.6 178 38.2
BolC3t16701H Brassica oleracea HOM05D003044 ORTHO05D001869 5.3e-06 56.6 143 41.3
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 5.3e-06 56.6 176 35.2
Carub.0003s0988 Capsella rubella HOM05D003044 ORTHO05D001869 6.9e-06 56.2 165 41.2
Duzib128G0650 Durio zibethinus HOM05D003044 ORTHO05D001869 9.0e-06 55.8 243 32.1
SGA_v2.0_scaffold90G27707 Striga asiatica HOM05D003044 ORTHO05D001869 9.0e-06 55.8 215 35.8


User provided reference genes

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