Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0315471 Helianthus annuus HOM05D002783 ORTHO05D221941 4.9e-51 204.1 100 100.0
TAR636G0909 Trochodendron aralioides HOM05D002783 ORTHO05D003055 1.9e-07 59.3 35 80.0
ATR0804G019 Amborella trichopoda HOM05D002783 ORTHO05D003055 4.3e-07 58.2 34 82.4
BolC9t58471H Brassica oleracea HOM05D002783 ORTHO05D003055 4.3e-07 58.2 37 73.0
CDE05G2571 Ceratophyllum demersum HOM05D002783 ORTHO05D003055 4.3e-07 58.2 34 82.4
HanXRQChr10g0315451 Helianthus annuus HOM05D002783 ORTHO05D003055 4.3e-07 58.2 34 82.4
BcaB08g36544 Brassica carinata HOM05D002783 ORTHO05D003055 9.6e-07 57.0 34 79.4
BraA01t01319Z Brassica rapa HOM05D002783 ORTHO05D003055 9.6e-07 57.0 80 45.0
Carub.0006s3187 Capsella rubella HOM05D002783 ORTHO05D003055 9.6e-07 57.0 50 64.0
Haze_20880 Corylus avellana HOM05D002783 ORTHO05D003055 9.6e-07 57.0 34 79.4
Haze_20889 Corylus avellana HOM05D002783 ORTHO05D003055 9.6e-07 57.0 34 79.4
Lsat_1_v5_gn_8_59100 Lactuca sativa HOM05D002783 ORTHO05D003055 9.6e-07 57.0 34 79.4
BcaC04g19407 Brassica carinata HOM05D002783 ORTHO05D003055 1.3e-06 56.6 34 76.5
C09p56040 Brassica napus HOM05D002783 ORTHO05D003055 1.3e-06 56.6 34 76.5
COL.COLO4_07527 Corchorus olitorius HOM05D002783 ORTHO05D003055 1.3e-06 56.6 39 71.8
Nitab4.5_0008116g0020 Nicotiana tabacum HOM05D002783 ORTHO05D003055 1.3e-06 56.6 56 55.4
vmacro06127 Vaccinium macrocarpon HOM05D002783 ORTHO05D003055 1.3e-06 56.6 34 79.4
Actinidia07428 Actinidia chinensis HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Actinidia13164 Actinidia chinensis HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Actinidia21993 Actinidia chinensis HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Actinidia26394 Actinidia chinensis HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Actinidia40466 Actinidia chinensis HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Ah.09g233520 Amaranthus hybridus HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
MSTRG.12795 Avicennia marina HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
MSTRG.18022 Avicennia marina HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
EL10Ac8g18640 Beta vulgaris HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
BcaB01g01756 Brassica carinata HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Carub.0006s1854 Capsella rubella HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Carub.0006s1855 Capsella rubella HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Carub.0007s1892 Capsella rubella HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
CAN.G230.4 Capsicum annuum HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
CAN.G230.9 Capsicum annuum HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
CAN.G697.4 Capsicum annuum HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Cc06_g08600 Coffea canephora HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Dinv35544 Davidia involucrata HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Dinv36532 Davidia involucrata HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Dinv37118 Davidia involucrata HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
ECA234G0314 Erigeron canadensis HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Eucgr.C04195 Eucalyptus grandis HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Gohir.A06G056600 Gossypium hirsutum HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Gohir.A08G238900 Gossypium hirsutum HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Gohir.D06G055000 Gossypium hirsutum HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Gohir.D08G259600 Gossypium hirsutum HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Gorai.004G277400 Gossypium raimondii HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Gorai.010G064300 Gossypium raimondii HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
HanXRQChr12g0356331 Helianthus annuus HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Hma1.2p1_1521F.1_g288630 Hydrangea macrophylla HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
MBI02_g12518_MAGBIO Magnolia biondii HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
MBI02_g15891_MAGBIO Magnolia biondii HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
MBI18_g28221_MAGBIO Magnolia biondii HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Manes.06G048900 Manihot esculenta HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Manes.14G131800 Manihot esculenta HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Nn2g11285 Nelumbo nucifera HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Nn2g13526 Nelumbo nucifera HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Oeu013159.1 Olea europaea HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Oeu030553.1 Olea europaea HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Os03g0241200 Oryza sativa ssp. japonica HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Peaxi162Scf00014g01621 Petunia axillaris HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Peaxi162Scf00975g00130 Petunia axillaris HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Prupe.5G003200 Prunus persica HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Prupe.7G241400 Prunus persica HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Rhsim01G0073000 Rhododendron simsii HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Rhsim01G0073800 Rhododendron simsii HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
SalBow1G1255 Salvia bowleyana HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
SalBow2G1329 Salvia bowleyana HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Hund09134 Selenicereus undatus HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Sc08g0006680 Simmondsia chinensis HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Sc18g0000630 Simmondsia chinensis HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Solyc09g011420.3 Solanum lycopersicum HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Sopen09g006150 Solanum pennellii HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Sopen09g034950 Solanum pennellii HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
PGSC0003DMG400024264 Solanum tuberosum HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
PGSC0003DMG400026414 Solanum tuberosum HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
SGA_v2.0_scaffold3G01671 Striga asiatica HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
SGA_v2.0_scaffold6G03310 Striga asiatica HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
TWI32G1036 Tripterygium wilfordii HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
TWI53G1874 Tripterygium wilfordii HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
TWI63G0307 Tripterygium wilfordii HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
TWI74G0062 Tripterygium wilfordii HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
TAR369G0132 Trochodendron aralioides HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
TAR623G1184 Trochodendron aralioides HOM05D000015 ORTHO05D000270 1.6e-06 56.2 34 79.4
TAR633G1360 Trochodendron aralioides HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
vmacro20549 Vaccinium macrocarpon HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
HPP92_010463 Vanilla planifolia HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
HPP92_017406 Vanilla planifolia HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
GSVIVG01015520001 Vitis vinifera HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
GSVIVG01016438001 Vitis vinifera HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Zm00001eb010300 Zea mays HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Zm00001eb399010 Zea mays HOM05D002783 ORTHO05D003055 1.6e-06 56.2 34 79.4
Oeu001837.1 Olea europaea HOM05D002783 ORTHO05D003055 2.1e-06 55.8 34 76.5
PSO339G3638 Papaver somniferum HOM05D002783 ORTHO05D003055 2.1e-06 55.8 34 76.5
BolC1t01612H Brassica oleracea HOM05D002783 ORTHO05D003055 2.8e-06 55.5 44 63.6
Aa31LG4G12710 Aethionema arabicum HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Aa31LG4G12720 Aethionema arabicum HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
arahy.Tifrunner.gnm1.ann1.211B66 Arachis hypogaea HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
arahy.Tifrunner.gnm1.ann1.I4NI6I Arachis hypogaea HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
CANSAT11G2471 Cannabis sativa HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
CiPaw.03G243300 Carya illinoinensis HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Ca_02671_v3 Cicer arietinum L. HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
ClCG06G011020 Citrullus lanatus HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
ClCG11G002970 Citrullus lanatus HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
MELO3C004514.2 Cucumis melo HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
MELO3C010355.2 Cucumis melo HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
CsaV3_2G002790 Cucumis sativus L. HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
DCAR_028813 Daucus carota HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Duzib114G0961 Durio zibethinus HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Duzib187G1828 Durio zibethinus HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
ECA240G3036 Erigeron canadensis HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Migut.D02563 Erythranthe guttata HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Migut.D02587 Erythranthe guttata HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Eucgr.C01159 Eucalyptus grandis HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Glyma.02G229800 Glycine max HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Glyma.13G167800 Glycine max HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Glyma.14G196700 Glycine max HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Glyma.17G115400 Glycine max HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
HanXRQChr09g0242291 Helianthus annuus HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Lj1g0027472 Lotus japonicus HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Lj6g0016322 Lotus japonicus HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Lalb_Chr01g0011811 Lupinus albus HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Lalb_Chr25g0278621 Lupinus albus HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Medtr0011s0330 Medicago truncatula HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
PSO339G4056 Papaver somniferum HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
PSO384G0595 Papaver somniferum HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Phvul.003G163950 Phaseolus vulgaris HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Phvul.008G269000 Phaseolus vulgaris HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Potri.013G116800 Populus trichocarpa HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
QL02p088196 Quercus lobata HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Sed0027011 Sechium edule HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
SEGI_23989 Sequoiadendron giganteum HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
Thecc.09G125300 Theobroma cacao HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
TPR.G21261 Trifolium pratense HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
TAR383G0378 Trochodendron aralioides HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
TAR625G0003 Trochodendron aralioides HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
TAR636G0842 Trochodendron aralioides HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
unitig_32.g10953 Utricularia gibba HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
unitig_748.g8156 Utricularia gibba HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
VMungo0647G0461 Vigna mungo HOM05D002783 ORTHO05D003055 3.7e-06 55.1 34 76.5
AL7G31230 Arabidopsis lyrata HOM05D002783 ORTHO05D003055 4.8e-06 54.7 34 76.5
CARHR192670 Cardamine hirsuta HOM05D002783 ORTHO05D003055 4.8e-06 54.7 33 78.8
Mapoly0003s0247 Marchantia polymorpha HOM05D002783 ORTHO05D003055 4.8e-06 54.7 34 76.5
Sp6g24250 Schrenkiella parvula HOM05D002783 ORTHO05D003055 4.8e-06 54.7 34 76.5
Sp7g20510 Schrenkiella parvula HOM05D002783 ORTHO05D003055 4.8e-06 54.7 34 76.5
MSTRG.20938 Avicennia marina HOM05D002783 ORTHO05D003055 6.2e-06 54.3 34 76.5
BraA03t12172Z Brassica rapa HOM05D002783 ORTHO05D003055 6.2e-06 54.3 36 72.2
AUR62011121 Chenopodium quinoa HOM05D002783 ORTHO05D003055 6.2e-06 54.3 34 76.5
AUR62013370 Chenopodium quinoa HOM05D002783 ORTHO05D003055 6.2e-06 54.3 34 76.5
Os10g0124000 Oryza sativa ssp. japonica HOM05D002783 ORTHO05D003055 6.2e-06 54.3 35 74.3
Atru.chr13.2221 Acer truncatum HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
Atru.chr7.1225 Acer truncatum HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
AL6G31710 Arabidopsis lyrata HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
AL6G47560 Arabidopsis lyrata HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
AT4G22380 Arabidopsis thaliana HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
AT5G20160 Arabidopsis thaliana HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
BcaB01g02624 Brassica carinata HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
BcaB05g23734 Brassica carinata HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
BcaC01g04578 Brassica carinata HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
BcaC03g16263 Brassica carinata HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
BcaC04g21247 Brassica carinata HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
BcaC09g51101 Brassica carinata HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
A01p13740 Brassica napus HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
A02p25470 Brassica napus HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
A03p29820 Brassica napus HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
A09p26750 Brassica napus HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
C02p40530 Brassica napus HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
C03p36080 Brassica napus HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
C09p33880 Brassica napus HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
BolC2t10079H Brassica oleracea HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
BolC3t15917H Brassica oleracea HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
BraA02t07535Z Brassica rapa HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
BraA09t38247Z Brassica rapa HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
CSS0018316 Camellia sinensis var. sinensis HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
CSS0020311 Camellia sinensis var. sinensis HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
CARHR253570 Cardamine hirsuta HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
Ciclev10009899m.g Citrus clementina HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
Thhalv10015017m.g Eutrema salsugineum HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
Thhalv10026563m.g Eutrema salsugineum HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
Thhalv10029067m.g Eutrema salsugineum HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
Sabra13G0098900 Salix brachista HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 73.5
Sed0005229 Sechium edule HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 73.5
Sed0009803 Sechium edule HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 73.5
THA.LOC104799743 Tarenaya hassleriana HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
THA.LOC104811033 Tarenaya hassleriana HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 76.5
VMungo1215G2726 Vigna mungo HOM05D002783 ORTHO05D003055 8.2e-06 53.9 34 73.5


User provided reference genes

Program Settings