Gene: AT4G22380

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G22380
  • Transcript Identifier AT4G22380.1
  • Gene Type Coding gene
  • Location Chr4 : 11812041-11812922 : negative

Gene Family Information

  • ID HOM05D002783
  • #Genes/#Species 248/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G22380.1
  • uniprot Q8LCC7

Descriptions

  • Description Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
  • Computational description Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote (InterPro:IPR002415), Ribosomal protein L7Ae/L8/Nhp2 family (InterPro:IPR018492), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038), Ribosomal protein L7Ae conserved site (InterPro:IPR004037); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT5G20160.1); Has 1809 Blast hits to 1809 proteins in 413 species: Archae - 342; Bacteria - 16; Metazoa - 564; Fungi - 259; Plants - 274; Viruses - 0; Other Eukaryotes - 354 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042254
IEA
GOA Databaseribosome biogenesis
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0030490
IBA
Gene Ontologymaturation of SSU-rRNA1
GO:0000470
IBA
Gene Ontologymaturation of LSU-rRNA1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046540
IBA
Gene OntologyU4/U6 x U5 tri-snRNP complex1
GO:0005730
IDA
IEA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus2
GO:0005730
IEA
InterPronucleolus
GO:1990904
IEA
GOA Databaseribonucleoprotein complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005840
IEA
GOA Databaseribosome
GO:0032040
IBA
Gene Ontologysmall-subunit processome1
GO:0071011
IBA
Gene Ontologyprecatalytic spliceosome1
GO:0031428
IBA
Gene Ontologybox C/D RNP complex1
GO:0005829
HDA
Gene Ontologycytosol3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR029064 50S ribosomal protein L30e-like
IPR002415 H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
IPR018492 Ribosomal protein L7Ae/L8/Nhp2 family
Mapman id Description
16.2.1.3.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U4/U6 small nuclear ribonucleoprotein particle (snRNP).protein factor (NHP2L1/SNU13)
17.1.1.2.1.5.4 Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.component Snu13