Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 0.0e+00 1166.4 589 100.0
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 5.7e-240 834.3 510 82.2
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 4.1e-230 801.6 465 85.2
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 1.2e-189 667.2 505 67.7
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 2.3e-188 662.9 507 67.1
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 1.5e-187 660.2 493 69.6
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 1.9e-187 659.8 519 66.3
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 5.6e-187 658.3 519 66.3
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 9.5e-187 657.5 527 65.7
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 9.5e-187 657.5 525 65.0
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 4.7e-186 655.2 527 65.3
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.5e-184 650.2 527 64.5
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 1.7e-183 646.7 490 68.6
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 1.4e-182 643.7 507 66.5
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 1.9e-182 643.3 509 65.8
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 4.1e-182 642.1 508 65.7
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 1.6e-181 640.2 513 65.1
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 2.7e-181 639.4 528 64.2
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 2.3e-180 636.3 509 65.0
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 3.0e-180 636.0 524 64.5
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 5.0e-180 635.2 548 62.0
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.1e-179 634.0 475 68.0
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 7.3e-179 631.3 508 64.2
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 1.6e-178 630.2 516 64.7
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 2.8e-178 629.4 511 64.0
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 6.2e-178 628.2 512 65.4
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 2.3e-177 626.3 531 62.9
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 4.0e-177 625.5 551 60.3
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 1.5e-176 623.6 505 64.0
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 3.4e-176 622.5 528 64.2
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 9.9e-176 620.9 532 61.8
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 3.7e-175 619.0 526 62.2
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 4.9e-175 618.6 532 61.7
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.4e-174 617.1 532 61.8
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 1.9e-174 616.7 510 63.7
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 1.9e-174 616.7 510 63.3
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 9.2e-174 614.4 528 63.1
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 6.0e-173 611.7 445 70.8
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 7.8e-173 611.3 530 61.3
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 2.3e-172 609.8 513 63.5
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 2.3e-172 609.8 514 63.0
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 3.9e-172 609.0 531 62.0
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 5.1e-172 608.6 513 63.5
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 6.6e-172 608.2 524 61.6
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 6.6e-172 608.2 490 64.7
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 1.1e-171 607.4 521 63.0
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 1.9e-171 606.7 489 65.6
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 1.9e-171 606.7 539 62.0
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 3.3e-171 605.9 489 65.6
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 3.3e-171 605.9 565 59.1
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 3.3e-171 605.9 500 64.2
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 4.3e-171 605.5 523 61.0
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 1.2e-170 604.0 514 62.3
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 2.1e-170 603.2 511 61.4
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 2.8e-170 602.8 532 62.8
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 3.6e-170 602.4 521 62.4
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 4.7e-170 602.1 486 65.4
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 8.1e-170 601.3 486 65.4
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 8.1e-170 601.3 473 65.1
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 8.1e-170 601.3 523 62.0
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 1.4e-169 600.5 529 61.1
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 2.4e-169 599.7 486 65.2
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 3.1e-169 599.4 512 61.7
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 5.2e-169 598.6 523 60.6
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 5.2e-169 598.6 509 61.9
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 6.8e-169 598.2 496 63.7
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 8.9e-169 597.8 489 63.4
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 1.5e-168 597.0 525 61.5
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 2.0e-168 596.7 489 63.2
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 2.6e-168 596.3 475 65.1
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 4.4e-168 595.5 542 60.7
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 9.9e-168 594.3 480 64.0
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 2.2e-167 593.2 545 57.8
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 3.8e-167 592.4 481 63.8
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 1.9e-166 590.1 538 60.6
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 2.4e-166 589.7 483 62.7
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 9.2e-166 587.8 482 62.9
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 2.7e-165 586.3 530 58.7
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 4.6e-165 585.5 503 61.2
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 1.3e-164 583.9 528 59.7
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 1.7e-164 583.6 532 59.4
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 2.3e-164 583.2 556 57.6
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 3.9e-164 582.4 452 66.2
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 1.6e-162 577.0 520 60.6
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 1.1e-161 574.3 483 62.1
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 1.1e-161 574.3 530 57.7
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 5.4e-158 562.0 465 64.5
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.3e-154 550.8 562 55.2
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 1.2e-152 544.3 435 64.6
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 9.9e-152 541.2 487 58.1
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 3.8e-151 539.3 487 58.7
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 2.7e-149 533.1 431 64.7
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 2.7e-141 506.5 423 62.9
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 5.7e-131 472.2 495 53.7
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 4.2e-126 456.1 511 52.3
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.8e-92 344.4 373 53.1
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 2.6e-91 340.5 302 60.3
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.5e-86 324.7 268 63.4
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 8.6e-79 298.9 270 58.5
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 4.7e-77 293.1 440 40.5
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 1.3e-74 285.0 187 71.7
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 9.5e-70 268.9 422 37.0
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 2.8e-69 267.3 281 53.7
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 4.3e-62 243.4 240 55.4
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 3.6e-61 240.4 394 37.6
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 8.9e-60 235.7 575 31.0
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 8.6e-55 219.2 191 61.3
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 5.6e-54 216.5 206 56.3
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 3.1e-52 210.7 188 58.0
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 4.0e-52 210.3 120 77.5
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 5.8e-51 206.5 120 79.2
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.6e-45 188.3 151 61.6
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 2.0e-43 181.4 171 57.3
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 2.4e-41 174.5 86 95.3
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 4.2e-41 173.7 252 38.5
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 2.1e-29 134.8 78 75.6
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 5.8e-27 126.7 140 57.9
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 1.4e-25 122.1 219 37.0
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 3.2e-25 120.9 109 61.5
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 2.0e-19 101.7 96 55.2
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 2.2e-18 98.2 124 54.0
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 2.2e-18 98.2 83 67.5
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 1.5e-14 85.5 53 69.8
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 5.7e-14 83.6 99 51.5
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 1.1e-12 79.3 45 68.9
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 7.7e-11 73.2 94 51.1
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 4.2e-09 67.4 68 61.8
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 7.2e-09 66.6 192 34.4
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 5.1e-07 60.5 79 46.8
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 4.3e-06 57.4 32 78.1


User provided reference genes

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