Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 3.0e-171 605.1 311 100.0
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 8.1e-145 517.3 311 85.5
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 2.8e-137 492.3 311 81.7
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 9.3e-125 450.7 311 73.3
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.6e-121 439.9 311 73.6
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.1e-120 437.2 311 73.0
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 1.1e-120 437.2 311 71.1
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.4e-120 436.8 311 71.4
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.8e-120 436.4 311 73.3
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 2.4e-120 436.0 311 72.0
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 3.1e-120 435.6 311 73.3
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.2e-119 433.7 311 72.3
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 2.0e-119 433.0 316 71.2
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 7.6e-119 431.0 311 70.7
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 1.0e-118 430.6 316 70.9
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 1.7e-118 429.9 305 72.1
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.7e-118 429.9 317 70.7
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 2.9e-118 429.1 320 69.7
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 4.9e-118 428.3 306 72.5
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 6.5e-118 427.9 305 73.4
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 1.4e-117 426.8 311 72.0
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.9e-117 426.4 316 70.3
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 5.5e-117 424.9 308 71.8
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 5.5e-117 424.9 312 71.2
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 1.6e-116 423.3 311 70.4
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 2.1e-116 422.9 309 71.8
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.6e-116 421.8 309 72.2
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 4.6e-116 421.8 309 72.2
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 6.1e-116 421.4 309 72.2
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 6.1e-116 421.4 309 71.2
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 6.1e-116 421.4 309 71.2
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 1.0e-115 420.6 316 69.6
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.3e-115 420.2 309 71.2
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 5.1e-115 418.3 311 71.1
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 8.7e-115 417.5 313 70.0
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 8.7e-115 417.5 315 70.8
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 1.5e-114 416.8 305 71.1
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.5e-114 416.8 313 70.3
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 2.5e-114 416.0 313 69.3
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 3.3e-114 415.6 306 70.9
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 4.3e-114 415.2 310 70.6
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 4.3e-114 415.2 310 70.6
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 5.7e-114 414.8 312 68.6
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.7e-114 414.8 312 68.6
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 5.7e-114 414.8 305 70.8
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 7.4e-114 414.5 316 69.0
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 3.7e-113 412.1 311 70.1
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 4.8e-113 411.8 319 69.3
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.8e-113 411.8 313 69.0
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 6.3e-113 411.4 315 70.8
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 8.2e-113 411.0 320 67.5
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 1.8e-112 409.8 311 69.1
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 2.4e-112 409.5 311 69.1
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 3.1e-112 409.1 312 67.3
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 4.1e-112 408.7 318 69.5
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 4.1e-112 408.7 305 69.5
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.5e-111 406.8 317 67.5
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 4.5e-111 405.2 305 69.8
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 5.9e-111 404.8 319 68.0
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 5.9e-111 404.8 316 69.0
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 1.0e-110 404.1 312 67.3
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.3e-110 403.7 354 63.8
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.7e-110 403.3 311 67.5
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.7e-110 403.3 325 64.6
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 2.2e-110 402.9 320 65.9
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 2.9e-110 402.5 305 68.9
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 5.0e-110 401.7 318 68.6
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 6.5e-110 401.4 308 68.5
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 1.1e-109 400.6 312 67.6
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 4.2e-109 398.7 323 64.4
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.6e-108 396.7 311 68.2
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 3.6e-108 395.6 309 68.9
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 3.6e-108 395.6 203 100.0
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 3.6e-108 395.6 311 68.8
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 4.6e-108 395.2 311 67.2
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 4.6e-108 395.2 311 67.5
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 4.6e-108 395.2 311 67.5
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 4.6e-108 395.2 312 64.4
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 7.9e-108 394.4 317 66.9
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.0e-107 394.0 312 67.9
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 2.3e-107 392.9 311 67.2
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 2.3e-107 392.9 311 67.2
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 3.9e-107 392.1 343 62.7
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 5.1e-107 391.7 318 65.1
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 8.8e-107 391.0 311 65.9
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 8.8e-107 391.0 311 65.9
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 8.8e-107 391.0 311 65.9
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 5.7e-106 388.3 313 66.8
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 5.7e-106 388.3 312 67.0
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 1.3e-105 387.1 311 65.6
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 1.7e-105 386.7 305 66.9
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 1.7e-105 386.7 268 75.7
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 2.2e-105 386.3 323 63.8
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 4.8e-105 385.2 311 64.6
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.4e-103 379.0 311 66.9
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 4.5e-103 378.6 221 86.0
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 6.5e-102 374.8 291 68.4
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 1.9e-101 373.2 329 63.5
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.0e-99 367.5 305 65.6
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 8.8e-99 364.4 258 73.3
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 3.3e-98 362.5 340 60.0
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 7.4e-98 361.3 307 64.2
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 7.4e-98 361.3 339 57.8
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 3.7e-97 359.0 333 59.8
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.8e-94 349.0 287 64.5
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 5.0e-94 348.6 275 69.8
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.1e-90 337.4 308 57.1
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 5.7e-90 335.1 265 67.5
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.2e-89 333.2 316 55.7
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 2.8e-89 332.8 272 71.3
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 8.2e-89 331.3 185 91.9
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 4.1e-88 328.9 311 61.1
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 3.5e-87 325.9 211 77.7
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 3.8e-86 322.4 237 70.5
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 8.5e-86 321.2 268 64.6
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 4.4e-82 308.9 306 56.5
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 5.7e-82 308.5 311 57.2
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 3.1e-80 302.8 311 51.8
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 1.8e-67 260.4 210 67.6
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 1.2e-63 247.7 291 50.9
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 4.6e-63 245.7 243 60.1
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 1.9e-61 240.4 232 58.2
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.2e-60 237.7 191 70.2
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 3.6e-60 236.1 380 41.3
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 2.4e-48 196.8 227 47.6
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 1.6e-47 194.1 117 83.8
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 4.6e-47 192.6 312 43.9
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 7.6e-42 175.3 195 52.3
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 4.1e-40 169.5 241 42.3
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 2.1e-39 167.2 95 88.4
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.2e-36 157.9 142 61.3
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 2.8e-36 156.8 204 44.1
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.1e-35 153.3 122 67.2
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 6.8e-35 152.1 96 81.2
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 3.4e-34 149.8 268 42.2
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 9.9e-34 148.3 93 82.8
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.5e-31 139.8 126 59.5
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.5e-31 139.8 126 59.5
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.3e-28 131.3 80 81.2
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.4e-27 127.9 190 41.6
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 4.2e-24 116.3 229 38.4
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.6e-23 114.4 99 62.6
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 3.0e-22 110.2 140 47.9
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 4.2e-16 89.7 62 75.8
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.6e-15 87.8 89 56.2
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 3.8e-09 66.6 131 37.4
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 7.1e-08 62.4 46 67.4
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 1.3e-06 58.2 44 56.8
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 1.3e-06 58.2 57 59.6
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.0e-06 57.0 40 60.0
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 3.9e-06 56.6 43 62.8


User provided reference genes

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