Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 3.0e-108 395.2 203 100.0
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 3.0e-108 395.2 203 100.0
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 8.0e-101 370.5 203 92.1
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 3.0e-100 368.6 203 90.6
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 5.4e-97 357.8 203 87.2
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 3.5e-96 355.1 203 87.2
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 1.0e-95 353.6 203 86.7
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.7e-95 352.8 203 86.7
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 1.7e-95 352.8 203 86.7
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.7e-95 352.8 203 86.7
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 2.3e-95 352.4 203 86.7
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 3.8e-95 351.7 203 85.7
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 3.8e-95 351.7 203 86.2
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 5.0e-95 351.3 203 85.2
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 8.6e-95 350.5 203 86.2
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 1.1e-94 350.1 202 87.1
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 1.1e-94 350.1 203 85.2
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 1.9e-94 349.4 203 85.2
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 3.3e-94 348.6 203 85.2
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.3e-94 348.6 203 86.2
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 3.3e-94 348.6 203 86.2
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 3.3e-94 348.6 203 86.2
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.2e-94 348.2 203 84.7
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.2e-94 348.2 203 84.7
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 4.2e-94 348.2 203 84.7
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 9.5e-94 347.1 203 83.7
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.2e-93 346.7 203 83.7
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.2e-93 346.7 203 85.2
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 1.2e-93 346.7 203 84.7
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 2.1e-93 345.9 203 84.2
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 2.1e-93 345.9 203 85.2
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.1e-93 345.9 203 84.2
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.8e-93 345.5 203 84.7
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 3.6e-93 345.1 203 84.7
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 3.6e-93 345.1 203 84.7
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.6e-93 345.1 203 84.7
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 4.7e-93 344.7 203 83.3
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 6.1e-93 344.4 203 84.2
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 6.1e-93 344.4 203 84.2
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 6.1e-93 344.4 203 84.2
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 6.1e-93 344.4 203 83.7
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 6.1e-93 344.4 203 83.3
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 1.0e-92 343.6 203 84.2
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 1.0e-92 343.6 203 83.3
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 1.0e-92 343.6 203 83.3
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 1.0e-92 343.6 203 84.2
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 1.4e-92 343.2 203 83.7
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 1.8e-92 342.8 203 82.8
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 1.8e-92 342.8 203 83.3
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 2.3e-92 342.4 203 84.2
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 3.0e-92 342.0 203 83.7
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 3.0e-92 342.0 203 82.8
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 4.0e-92 341.7 203 83.7
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 5.2e-92 341.3 203 82.8
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 8.9e-92 340.5 203 83.7
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 8.9e-92 340.5 203 83.7
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.5e-91 339.7 203 82.8
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 1.5e-91 339.7 203 82.8
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 1.5e-91 339.7 203 82.8
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 2.0e-91 339.3 203 82.3
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 2.0e-91 339.3 203 82.8
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.6e-91 339.0 203 81.8
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 3.4e-91 338.6 203 82.3
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 3.4e-91 338.6 203 82.3
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 4.4e-91 338.2 203 82.8
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 5.7e-91 337.8 203 82.3
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 7.5e-91 337.4 203 82.8
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 1.7e-90 336.3 203 84.7
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 2.2e-90 335.9 203 81.3
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 2.2e-90 335.9 202 83.2
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 2.2e-90 335.9 202 83.2
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 2.9e-90 335.5 203 82.3
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 2.9e-90 335.5 203 82.8
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 4.9e-90 334.7 203 82.3
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 8.3e-90 334.0 203 82.3
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 1.4e-89 333.2 203 80.8
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 1.4e-89 333.2 203 80.3
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 1.8e-89 332.8 203 81.8
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 2.4e-89 332.4 203 81.8
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.1e-89 331.6 203 81.3
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 5.4e-89 331.3 185 91.9
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 9.2e-89 330.5 203 81.3
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.6e-88 329.7 204 81.4
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 4.6e-88 328.2 203 79.8
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 5.9e-88 327.8 203 79.3
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 7.8e-88 327.4 203 80.3
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 1.3e-87 326.6 203 80.3
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.7e-87 326.2 203 80.3
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 3.9e-87 325.1 203 79.8
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 3.9e-87 325.1 203 79.8
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 5.0e-87 324.7 239 71.1
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 6.6e-87 324.3 202 79.2
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 6.6e-87 324.3 203 79.3
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 6.6e-87 324.3 203 78.3
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.1e-86 323.6 203 78.3
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.1e-86 323.6 203 78.3
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 1.1e-86 323.6 203 79.3
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 1.1e-86 323.6 202 79.2
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 1.5e-86 323.2 203 79.3
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 2.5e-86 322.4 203 78.3
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 2.5e-86 322.4 203 78.3
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 2.5e-86 322.4 203 78.3
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 2.5e-86 322.4 204 79.4
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 4.3e-86 321.6 203 77.8
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 6.4e-82 307.8 211 75.8
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 2.3e-79 299.3 203 75.4
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.9e-79 298.5 200 76.0
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 3.9e-79 298.5 203 74.4
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 1.5e-78 296.6 183 81.4
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 6.2e-77 291.2 179 81.0
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.8e-76 289.7 203 69.5
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 3.1e-76 288.9 203 68.0
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 1.6e-72 276.6 189 75.7
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 4.6e-72 275.0 197 70.1
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 3.6e-69 265.4 199 71.9
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 4.0e-68 261.9 181 74.6
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 5.2e-68 261.5 203 63.1
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 2.6e-67 259.2 158 81.6
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 8.1e-61 237.7 191 70.2
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 3.2e-57 225.7 218 57.8
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 3.5e-56 222.2 205 62.0
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 6.2e-53 211.5 126 81.7
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 6.2e-53 211.5 151 72.2
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 1.0e-47 194.1 117 83.8
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 5.3e-44 181.8 206 48.1
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.3e-39 167.2 95 88.4
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 1.1e-36 157.5 206 43.7
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.0e-35 153.3 122 67.2
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 4.5e-35 152.1 96 81.2
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 6.5e-34 148.3 93 82.8
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 2.1e-32 143.3 164 57.3
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.6e-32 142.1 80 88.8
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 7.9e-32 141.4 87 78.2
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.0e-31 139.4 126 59.5
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 3.0e-31 139.4 126 59.5
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.1e-30 137.5 80 86.2
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 8.2e-29 131.3 80 81.2
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 2.2e-26 123.2 81 72.8
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.0e-23 114.4 99 62.6
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 1.1e-22 110.9 81 61.7
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 3.4e-19 99.4 214 37.4
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 2.2e-13 80.1 47 74.5
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 4.7e-08 62.4 46 67.4
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.0e-07 61.2 38 81.6
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 8.8e-07 58.2 57 59.6
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 2.6e-06 56.6 43 62.8
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 5.7e-06 55.5 43 65.1


User provided reference genes

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