Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0299791 Helianthus annuus HOM05D000246 ORTHO05D008363 5.6e-25 116.7 55 100.0
HanXRQChr12g0385911 Helianthus annuus HOM05D000246 ORTHO05D008363 1.3e-21 105.5 56 91.1
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 1.7e-21 105.1 56 91.1
Lsat_1_v5_gn_4_2880 Lactuca sativa HOM05D000246 ORTHO05D008363 3.8e-21 104.0 56 89.3
ECA234G2532 Erigeron canadensis HOM05D000246 ORTHO05D008363 8.4e-21 102.8 56 87.5
Ah.03g133840 Amaranthus hybridus HOM05D000246 ORTHO05D008363 1.1e-20 102.4 56 85.7
Migut.K00698 Erythranthe guttata HOM05D000246 ORTHO05D008363 1.9e-20 101.7 56 87.5
TWI36G1065 Tripterygium wilfordii HOM05D000246 ORTHO05D008363 1.9e-20 101.7 56 87.5
Lj6C822G18 Lonicera japonica HOM05D000246 ORTHO05D008363 2.5e-20 101.3 56 87.5
arahy.Tifrunner.gnm1.ann1.L7S9V2 Arachis hypogaea HOM05D000246 ORTHO05D008363 3.2e-20 100.9 56 85.7
arahy.Tifrunner.gnm1.ann1.ZECH1J Arachis hypogaea HOM05D000246 ORTHO05D008363 3.2e-20 100.9 56 85.7
CSS0031830 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D008363 3.2e-20 100.9 56 85.7
DCAR_031182 Daucus carota HOM05D000246 ORTHO05D008363 3.2e-20 100.9 56 85.7
Oeu041679.1 Olea europaea HOM05D000246 ORTHO05D008363 3.2e-20 100.9 56 87.5
Phvul.002G176000 Phaseolus vulgaris HOM05D000246 ORTHO05D008363 3.2e-20 100.9 56 85.7
VMungo0251G2810 Vigna mungo HOM05D000246 ORTHO05D008363 3.2e-20 100.9 56 85.7
Aqoxy5G03513 Aquilegia oxysepala HOM05D000246 ORTHO05D008363 4.2e-20 100.5 56 85.7
Lj4g0022914 Lotus japonicus HOM05D000246 ORTHO05D008363 4.2e-20 100.5 56 85.7
Ca_18064_v3 Cicer arietinum L. HOM05D000246 ORTHO05D008363 5.5e-20 100.1 56 85.7
EL10Ac6g13439 Beta vulgaris HOM05D000246 ORTHO05D008363 9.3e-20 99.4 56 85.7
AUR62005572 Chenopodium quinoa HOM05D000246 ORTHO05D008363 9.3e-20 99.4 56 83.9
AUR62024158 Chenopodium quinoa HOM05D000246 ORTHO05D008363 9.3e-20 99.4 56 83.9
Cc11_g16610 Coffea canephora HOM05D000246 ORTHO05D008363 9.3e-20 99.4 56 82.1
Potri.010G056500 Populus trichocarpa HOM05D000246 ORTHO05D008363 9.3e-20 99.4 56 83.9
Atru.chr11.2248 Acer truncatum HOM05D000246 ORTHO05D008363 1.2e-19 99.0 56 85.7
Atru.chr11.2263 Acer truncatum HOM05D000246 ORTHO05D008363 1.2e-19 99.0 56 85.7
Actinidia25762 Actinidia chinensis HOM05D000246 ORTHO05D008363 2.1e-19 98.2 56 83.9
Nn4g22403 Nelumbo nucifera HOM05D000246 ORTHO05D008363 2.1e-19 98.2 56 82.1
TPR.G17092 Trifolium pratense HOM05D000246 ORTHO05D008363 2.1e-19 98.2 56 83.9
PSO782G1321 Papaver somniferum HOM05D000246 ORTHO05D008363 2.7e-19 97.8 56 83.9
QL03p054717 Quercus lobata HOM05D000246 ORTHO05D008363 2.7e-19 97.8 56 83.9
Gohir.A01G156200 Gossypium hirsutum HOM05D000246 ORTHO05D008363 3.5e-19 97.4 56 82.1
Psat7g079560 Pisum sativum HOM05D000246 ORTHO05D008363 3.5e-19 97.4 56 83.9
Prupe.1G233100 Prunus persica HOM05D000246 ORTHO05D008363 3.5e-19 97.4 56 80.4
RcHm_v2.0_Chr4g0431111 Rosa chinensis HOM05D000246 ORTHO05D008363 4.6e-19 97.1 56 78.6
Gohir.D01G154200 Gossypium hirsutum HOM05D000246 ORTHO05D008363 6.0e-19 96.7 56 80.4
Gorai.002G190800 Gossypium raimondii HOM05D000246 ORTHO05D008363 6.0e-19 96.7 56 80.4
TAR629G2337 Trochodendron aralioides HOM05D000246 ORTHO05D008363 6.0e-19 96.7 56 83.9
CiPaw.05G115000 Carya illinoinensis HOM05D000246 ORTHO05D008363 7.9e-19 96.3 56 82.1
Dinv14802 Davidia involucrata HOM05D000246 ORTHO05D008363 7.9e-19 96.3 56 80.4
Glyma.08G102300 Glycine max HOM05D000246 ORTHO05D008363 7.9e-19 96.3 56 82.1
PSO063G0842 Papaver somniferum HOM05D000246 ORTHO05D008363 7.9e-19 96.3 56 82.1
Sc04g0005060 Simmondsia chinensis HOM05D000246 ORTHO05D008363 1.0e-18 95.9 56 82.1
GSVIVG01010342001 Vitis vinifera HOM05D000246 ORTHO05D008363 1.0e-18 95.9 56 82.1
CsaV3_5G030500 Cucumis sativus L. HOM05D000246 ORTHO05D008363 1.3e-18 95.5 56 82.1
Eucgr.B03462 Eucalyptus grandis HOM05D000246 ORTHO05D008363 1.3e-18 95.5 56 78.6
FAN17G1269 Fragaria x ananassa HOM05D000246 ORTHO05D008363 1.3e-18 95.5 56 78.6
FAN22G1025 Fragaria x ananassa HOM05D000246 ORTHO05D008363 1.3e-18 95.5 56 78.6
Medtr8g080160 Medicago truncatula HOM05D000246 ORTHO05D008363 1.3e-18 95.5 56 82.1
Solyc05g014690.3 Solanum lycopersicum HOM05D000246 ORTHO05D008363 1.3e-18 95.5 56 78.6
Sopen05g009850 Solanum pennellii HOM05D000246 ORTHO05D008363 1.3e-18 95.5 56 78.6
Cpa.g.sc351.1 Carica papaya HOM05D000246 ORTHO05D008363 1.8e-18 95.1 56 80.4
Thecc.02G274400 Theobroma cacao HOM05D000246 ORTHO05D008363 1.8e-18 95.1 56 80.4
CAN.G524.28 Capsicum annuum HOM05D000246 ORTHO05D008363 2.3e-18 94.7 56 78.6
ClCG11G013890 Citrullus lanatus HOM05D000246 ORTHO05D008363 2.3e-18 94.7 56 80.4
MELO3C011889.2 Cucumis melo HOM05D000246 ORTHO05D008363 2.3e-18 94.7 56 80.4
Duzib251G0641 Durio zibethinus HOM05D000246 ORTHO05D008363 2.3e-18 94.7 56 80.4
Sabra10G0048600 Salix brachista HOM05D000246 ORTHO05D008363 2.3e-18 94.7 56 80.4
FAN07G2267 Fragaria x ananassa HOM05D000246 ORTHO05D008363 3.0e-18 94.4 56 76.8
Sed0026556 Sechium edule HOM05D000246 ORTHO05D008363 3.0e-18 94.4 56 80.4
SGA_v2.0_scaffold100G29590 Striga asiatica HOM05D000246 ORTHO05D008363 3.0e-18 94.4 56 82.1
Cfa009315 Carpinus fangiana HOM05D003830 ORTHO05D008363 3.9e-18 94.0 56 80.4
Haze_12369 Corylus avellana HOM05D000246 ORTHO05D008363 3.9e-18 94.0 56 80.4
FvH4_4g24310 Fragaria vesca HOM05D000246 ORTHO05D008363 3.9e-18 94.0 56 76.8
FAN12G3886 Fragaria x ananassa HOM05D000246 ORTHO05D008363 3.9e-18 94.0 56 76.8
MD16G1111900 Malus domestica HOM05D000246 ORTHO05D008363 3.9e-18 94.0 56 78.6
PGR102G1013 Punica granatum HOM05D000246 ORTHO05D008363 3.9e-18 94.0 56 78.6
vmacro16133 Vaccinium macrocarpon HOM05D000246 ORTHO05D008363 3.9e-18 94.0 56 80.4
Hma1.2p1_1340F.1_g276760 Hydrangea macrophylla HOM05D000246 ORTHO05D008363 5.1e-18 93.6 56 80.4
Hma1.2p1_1340F.1_g276770 Hydrangea macrophylla HOM05D000246 ORTHO05D008363 5.1e-18 93.6 56 80.4
Lalb_Chr12g0206361 Lupinus albus HOM05D000246 ORTHO05D008363 6.7e-18 93.2 56 78.6
MSTRG.7982 Avicennia marina HOM05D000246 ORTHO05D008363 8.7e-18 92.8 56 78.6
SHI17940 Sapria himalayana HOM05D000246 ORTHO05D008363 1.9e-17 91.7 56 75.0
Hund25439 Selenicereus undatus HOM05D000246 ORTHO05D008363 7.4e-17 89.7 54 79.6
Aa31sc262G10 Aethionema arabicum HOM05D000246 ORTHO05D008363 1.3e-16 89.0 56 75.0
unitig_22.g6411 Utricularia gibba HOM05D000246 ORTHO05D008363 1.3e-16 89.0 57 73.7
CARHR027560 Cardamine hirsuta HOM05D000246 ORTHO05D008363 1.6e-16 88.6 56 73.2
THA.LOC104820520 Tarenaya hassleriana HOM05D000246 ORTHO05D008363 2.8e-16 87.8 56 75.0
BcaB03g13967 Brassica carinata HOM05D000246 ORTHO05D008363 3.7e-16 87.4 56 73.2
BcaC06g35322 Brassica carinata HOM05D000246 ORTHO05D008363 3.7e-16 87.4 56 73.2
A07p11560 Brassica napus HOM05D000246 ORTHO05D008363 3.7e-16 87.4 56 73.2
C07p17440 Brassica napus HOM05D000246 ORTHO05D008363 3.7e-16 87.4 56 73.2
BolC7t42249H Brassica oleracea HOM05D000246 ORTHO05D008363 3.7e-16 87.4 56 73.2
BraA07t28944Z Brassica rapa HOM05D000246 ORTHO05D008363 3.7e-16 87.4 56 73.2
Sp1g24070 Schrenkiella parvula HOM05D000246 ORTHO05D008363 3.7e-16 87.4 56 73.2
Thhalv10006736m.g Eutrema salsugineum HOM05D000246 ORTHO05D008363 4.8e-16 87.0 56 71.4
Peaxi162Scf00128g00937 Petunia axillaris HOM05D000246 ORTHO05D008363 4.8e-16 87.0 56 73.2
SEGI_35750 Sequoiadendron giganteum HOM05D000246 ORTHO05D008363 6.2e-16 86.7 56 73.2
ATR0824G260 Amborella trichopoda HOM05D000246 ORTHO05D008363 8.2e-16 86.3 56 75.0
AL1G41360 Arabidopsis lyrata HOM05D000246 ORTHO05D008363 8.2e-16 86.3 56 71.4
AT1G27880 Arabidopsis thaliana HOM05D000246 ORTHO05D008363 8.2e-16 86.3 56 71.4
Zm00001eb425250 Zea mays HOM05D000246 ORTHO05D008363 8.2e-16 86.3 56 71.4
HPP92_008108 Vanilla planifolia HOM05D000246 ORTHO05D008363 2.4e-15 84.7 56 71.4
arahy.Tifrunner.gnm1.ann1.9VK01Q Arachis hypogaea HOM05D000246 ORTHO05D008363 4.0e-15 84.0 51 76.5
Carub.0001s2633 Capsella rubella HOM05D000246 ORTHO05D008363 4.0e-15 84.0 56 71.4
HPP92_008127 Vanilla planifolia HOM05D000246 ORTHO05D008363 4.0e-15 84.0 56 71.4
Pp3c11_4840 Physcomitrium patens HOM05D000246 ORTHO05D008363 9.0e-15 82.8 56 67.9
Os04g0486800 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D008363 4.5e-14 80.5 56 66.1
Mapoly0097s0064 Marchantia polymorpha HOM05D000246 ORTHO05D008363 1.4e-12 75.5 56 64.3
SMO118G0075 Selaginella moellendorffii HOM05D000246 ORTHO05D008363 1.4e-12 75.5 56 64.3
MBI08_g29122_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D008363 2.5e-09 64.7 32 90.6
Ciclev10030662m.g Citrus clementina HOM05D000246 ORTHO05D008363 2.4e-07 58.2 53 56.6
CAN.G692.6 Capsicum annuum HOM05D000246 ORTHO05D008363 3.1e-07 57.8 68 45.6
PRCOL_00002614 Prasinoderma coloniale HOM05D000246 ORTHO05D008363 5.3e-07 57.0 54 51.9
Zm00001eb354210 Zea mays HOM05D000246 ORTHO05D007179 9.0e-07 56.2 44 59.1
MCO05G045 Micromonas commoda HOM05D000246 ORTHO05D008363 1.2e-06 55.8 56 50.0
Haze_26952 Corylus avellana HOM05D000246 ORTHO05D002923 2.0e-06 55.1 55 47.3
Os04g0433800 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005396 2.0e-06 55.1 55 47.3
SGA_v2.0_scaffold158G37464 Striga asiatica HOM05D000246 ORTHO05D009140 2.0e-06 55.1 50 50.0
Nitab4.5_0000240g0090 Nicotiana tabacum HOM05D000246 ORTHO05D008363 2.6e-06 54.7 36 61.1
Nitab4.5_0011772g0040 Nicotiana tabacum HOM05D000246 ORTHO05D008363 2.6e-06 54.7 36 61.1
MCO11G650 Micromonas commoda HOM05D000246 ORTHO05D005396 3.4e-06 54.3 55 49.1
Pp3c20_2130 Physcomitrium patens HOM05D000246 ORTHO05D007179 3.4e-06 54.3 46 60.9
SEGI_40367 Sequoiadendron giganteum HOM05D000246 ORTHO05D007179 3.4e-06 54.3 46 58.7
Manes.13G015900 Manihot esculenta HOM05D000246 ORTHO05D008363 4.5e-06 53.9 32 78.1
SGA_v2.0_scaffold158G37461 Striga asiatica HOM05D000246 ORTHO05D009140 4.5e-06 53.9 50 48.0
MBI19_g41249_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D007179 5.9e-06 53.5 44 56.8
Rhsim11G0127500 Rhododendron simsii HOM05D000246 ORTHO05D005396 5.9e-06 53.5 55 45.5
ATR0210G017 Amborella trichopoda HOM05D000246 ORTHO05D007179 7.7e-06 53.1 44 56.8
MSTRG.18522 Avicennia marina HOM05D000246 ORTHO05D009140 7.7e-06 53.1 50 50.0
Haze_27071 Corylus avellana HOM05D000246 ORTHO05D002923 7.7e-06 53.1 43 55.8
DCAR_006693 Daucus carota HOM05D000246 ORTHO05D005396 7.7e-06 53.1 55 43.6
Solyc01g103960.3 Solanum lycopersicum HOM05D000246 ORTHO05D005396 7.7e-06 53.1 55 45.5
Sopen01g046350 Solanum pennellii HOM05D000246 ORTHO05D005396 7.7e-06 53.1 55 45.5
CDE01G0252 Ceratophyllum demersum HOM05D000246 ORTHO05D007179 1.0e-05 52.8 44 56.8
Migut.D00789 Erythranthe guttata HOM05D000246 ORTHO05D009140 1.0e-05 52.8 50 48.0
Hma1.2p1_2221F.1_g317340 Hydrangea macrophylla HOM05D000246 ORTHO05D005396 1.0e-05 52.8 55 45.5
Hma1.2p1_3213F.1_g334020 Hydrangea macrophylla HOM05D000246 ORTHO05D005396 1.0e-05 52.8 55 45.5
MBI15_g11744_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D009140 1.0e-05 52.8 50 48.0


User provided reference genes

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