Gene: AT1G27880

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G27880
  • Transcript Identifier AT1G27880.1
  • Gene Type Coding gene
  • Location Chr1 : 9708940-9713901 : positive

Gene Family Information

  • ID HOM05D000246
  • #Genes/#Species 1713/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G27880.1
  • uniprot Q0WVW7

Descriptions

  • Description DEAD/DEAH box RNA helicase family protein
  • Computational description DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT4G35740.1); Has 41244 Blast hits to 39032 proteins in 2984 species: Archae - 762; Bacteria - 21282; Metazoa - 5401; Fungi - 4173; Plants - 3671; Viruses - 588; Other Eukaryotes - 5367 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006310
IBA
IEA
Gene OntologyDNA recombination1
GO:0006310
IEA
InterProDNA recombination
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc05g014690.3
GO:0006281
IBA
Gene OntologyDNA repair1
GO:0000724
IBA
Gene Ontologydouble-strand break repair via homologous recombination1
GO:0032508
IBA
Gene OntologyDNA duplex unwinding1
GO:0006268
IBA
Gene OntologyDNA unwinding involved in DNA replication1
GO:0042631
IEP
Gene Ontologycellular response to water deprivation2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc05g014690.3
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003678
IEA
GOA DatabaseDNA helicase activity
GO:0009378
IBA
Gene Ontologyfour-way junction helicase activity1
GO:0043138
IBA
Gene Ontology3'-5' DNA helicase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005694
IBA
Gene Ontologychromosome1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR004589 DNA helicase, ATP-dependent, RecQ type
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
35.1 not assigned.annotated