Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 1.2e-228 796.2 375 100.0
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 2.6e-191 672.2 375 82.9
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 3.8e-187 658.3 361 81.2
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 1.5e-186 656.4 363 84.3
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 4.7e-185 651.4 363 83.7
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 1.0e-184 650.2 362 80.1
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 8.9e-184 647.1 361 79.8
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 7.8e-180 634.0 407 72.7
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 3.8e-179 631.7 362 77.9
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 5.6e-178 627.9 370 75.9
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 3.6e-177 625.2 368 76.1
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 3.0e-176 622.1 371 76.5
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 5.2e-176 621.3 371 75.2
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 4.4e-175 618.2 368 75.0
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 5.8e-175 617.8 362 76.2
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 9.8e-175 617.1 362 77.3
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 9.8e-175 617.1 368 75.0
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 9.8e-175 617.1 368 75.5
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 3.7e-174 615.1 361 74.5
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 6.4e-174 614.4 379 72.8
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 2.4e-173 612.5 361 74.5
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 1.6e-172 609.8 361 74.5
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 3.5e-172 608.6 410 71.0
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 6.0e-172 607.8 368 74.7
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 6.0e-172 607.8 362 75.1
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 7.8e-172 607.4 379 72.6
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 3.9e-171 605.1 370 74.1
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 5.0e-171 604.7 361 74.0
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.9e-170 602.8 370 73.5
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 2.5e-170 602.4 371 73.3
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 4.3e-170 601.7 374 72.2
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 9.5e-170 600.5 364 75.3
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 2.1e-169 599.4 389 71.0
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 3.6e-169 598.6 362 74.6
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 4.7e-169 598.2 372 71.8
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 6.2e-169 597.8 362 72.9
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 1.4e-168 596.7 362 73.5
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 2.3e-168 595.9 360 73.9
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 3.1e-168 595.5 360 74.2
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 3.1e-168 595.5 362 74.0
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 1.5e-167 593.2 360 74.2
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 2.0e-167 592.8 363 72.5
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 5.8e-167 591.3 360 74.2
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 1.3e-166 590.1 367 73.0
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 1.7e-166 589.7 366 73.8
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 1.7e-166 589.7 359 73.8
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 1.4e-165 586.6 360 73.9
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 1.9e-165 586.3 362 72.9
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 1.2e-164 583.6 360 72.5
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 1.2e-164 583.6 366 72.7
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 1.3e-163 580.1 362 72.1
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-163 579.3 377 69.0
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 3.0e-163 578.9 366 71.0
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 2.5e-162 575.9 370 69.7
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 3.3e-162 575.5 360 71.9
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 4.3e-162 575.1 361 71.5
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 2.1e-161 572.8 370 70.0
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 1.1e-160 570.5 362 71.5
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 1.1e-160 570.5 355 72.7
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 2.3e-160 569.3 364 70.1
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 6.8e-160 567.8 337 75.4
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 8.9e-160 567.4 360 71.7
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 1.5e-159 566.6 367 71.7
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 1.5e-159 566.6 365 70.1
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 4.4e-159 565.1 363 68.9
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 1.3e-158 563.5 364 71.4
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 2.2e-158 562.8 364 70.3
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 6.4e-158 561.2 364 70.9
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 8.3e-158 560.8 372 70.7
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 8.3e-158 560.8 364 71.7
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 2.4e-157 559.3 365 70.1
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 2.4e-157 559.3 365 70.1
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 3.2e-157 558.9 369 66.7
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 3.2e-157 558.9 365 70.1
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 3.2e-157 558.9 365 71.0
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 7.1e-157 557.8 365 69.9
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 9.2e-157 557.4 367 70.3
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 1.2e-156 557.0 365 69.9
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 2.3e-155 552.7 365 70.4
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 2.3e-155 552.7 363 70.0
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 3.0e-155 552.4 370 66.2
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 6.6e-155 551.2 366 70.2
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 3.3e-154 548.9 369 70.7
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 1.2e-153 547.0 338 72.8
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 2.8e-153 545.8 365 68.5
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 1.4e-152 543.5 370 69.5
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 5.2e-152 541.6 370 69.2
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 1.3e-150 537.0 359 67.7
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 7.1e-149 531.2 376 67.3
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 9.2e-149 530.8 345 69.9
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 3.5e-148 528.9 345 69.6
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 4.3e-146 521.9 295 76.6
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 7.6e-143 511.1 327 67.6
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 1.6e-137 493.4 397 60.5
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 6.2e-137 491.5 326 68.1
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 3.4e-135 485.7 364 63.7
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 3.0e-131 472.6 365 59.7
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 1.1e-130 470.7 332 66.6
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 3.7e-129 465.7 332 66.3
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 5.3e-128 461.8 365 59.2
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 2.2e-126 456.4 408 53.7
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 3.8e-126 455.7 361 59.3
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 3.8e-126 455.7 401 56.9
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 8.4e-126 454.5 361 59.3
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 1.4e-125 453.8 276 72.5
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 1.3e-123 447.2 293 69.3
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-123 446.4 364 59.1
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 3.0e-123 446.0 320 65.0
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.5e-122 443.0 354 60.2
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.4e-120 437.2 356 59.0
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-117 426.8 362 56.6
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 6.0e-116 421.8 315 65.4
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-111 407.1 247 72.5
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 2.0e-111 406.8 274 70.8
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 1.0e-110 404.4 253 74.3
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 4.6e-108 395.6 433 47.6
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-104 384.0 386 50.0
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 3.0e-99 366.3 274 58.4
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 2.4e-96 356.7 231 69.3
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 4.1e-96 355.9 403 46.4
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 4.5e-95 352.4 191 83.2
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 3.2e-93 346.3 192 80.2
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.7e-92 343.2 272 59.6
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.3e-91 340.1 336 53.9
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-77 293.9 194 69.1
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 2.7e-76 290.0 167 77.8
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.7e-76 289.3 194 67.0
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.4e-74 283.1 189 67.7
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 6.6e-70 268.9 397 38.5
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 3.0e-67 260.0 288 41.7
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 2.8e-65 253.4 157 72.6
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 8.0e-60 235.3 194 59.8
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-57 227.6 144 70.1
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-57 227.6 144 70.1
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.7e-57 227.6 144 70.1
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.9e-56 224.2 144 69.4
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-53 214.5 154 63.0
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 1.2e-52 211.5 212 50.9
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 8.3e-49 198.7 119 75.6
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.1e-47 194.1 188 51.1
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 7.1e-40 169.1 86 88.4
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.1e-39 167.5 96 74.0
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 5.1e-38 162.9 108 71.3
ATR0582G232 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.9e-37 161.0 100 68.0
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.2e-24 117.1 79 67.1
Gohir.A13G000900 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-23 114.8 62 75.8
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 3.0e-22 110.5 76 63.2
PSO541G5767 Papaver somniferum HOM05D001230 ORTHO05D001067 3.5e-15 87.0 47 80.9
CAN.G1057.23 Capsicum annuum HOM05D004741 ORTHO05D005454 5.1e-14 83.2 107 43.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 5.3e-11 73.2 71 43.7
Actinidia10255 Actinidia chinensis HOM05D004741 ORTHO05D005454 5.8e-10 69.7 36 83.3
SalBow7G3287 Salvia bowleyana HOM05D004741 ORTHO05D005454 5.8e-10 69.7 35 82.9
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 4.6e-07 60.1 228 27.2
arahy.Tifrunner.gnm1.ann1.RXWW1P Arachis hypogaea HOM05D001147 ORTHO05D000823 6.0e-07 59.7 61 45.9
Gohir.A13G000601 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.0e-06 58.9 59 42.4
Gohir.A08G000024 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.0e-06 57.4 83 38.6


User provided reference genes

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