Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 6.4e-199 697.2 349 100.0
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 3.8e-143 511.9 362 75.7
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 3.8e-119 432.2 335 71.0
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 8.3e-114 414.5 360 64.7
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 7.8e-112 407.9 355 63.4
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 3.9e-111 405.6 360 63.6
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 9.5e-110 401.0 362 63.3
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 9.5e-110 401.0 362 63.3
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 2.8e-109 399.4 362 62.7
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.8e-108 396.7 356 61.8
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 2.3e-108 396.4 357 62.2
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 4.0e-108 395.6 355 62.0
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 4.0e-108 395.6 356 62.4
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 1.2e-107 394.0 356 62.4
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.0e-107 393.3 358 61.5
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 7.5e-107 391.3 353 61.2
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 1.7e-106 390.2 366 60.7
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 2.9e-106 389.4 359 60.7
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 1.1e-105 387.5 363 60.3
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 9.2e-105 384.4 355 60.8
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 9.2e-105 384.4 360 61.4
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 1.0e-103 380.9 356 61.0
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 3.9e-103 379.0 359 59.1
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 6.6e-103 378.3 357 62.2
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 6.6e-103 378.3 363 58.4
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 1.9e-102 376.7 355 60.3
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 1.2e-101 374.0 355 59.7
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 1.2e-101 374.0 354 59.6
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 6.2e-101 371.7 355 57.7
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 6.2e-101 371.7 356 58.1
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 8.1e-101 371.3 357 58.5
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 1.8e-100 370.2 359 60.4
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.8e-100 370.2 363 58.4
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 4.0e-100 369.0 363 59.2
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 4.0e-100 369.0 354 59.3
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 5.2e-100 368.6 361 59.0
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 6.8e-100 368.2 353 58.1
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 6.8e-100 368.2 357 60.8
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.2e-99 367.5 357 58.8
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 1.2e-99 367.5 359 59.1
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 1.2e-99 367.5 351 60.1
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 1.5e-99 367.1 360 57.8
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 1.5e-99 367.1 360 57.8
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 2.6e-99 366.3 355 59.2
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 3.4e-99 365.9 356 58.4
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 5.8e-99 365.2 355 56.1
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 9.9e-99 364.4 356 59.3
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 9.9e-99 364.4 363 58.1
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 9.9e-99 364.4 353 59.2
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 9.9e-99 364.4 359 59.1
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 1.3e-98 364.0 354 59.0
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 1.3e-98 364.0 356 59.0
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.3e-98 364.0 357 58.5
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.7e-98 363.6 354 58.5
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 1.7e-98 363.6 360 57.5
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 2.2e-98 363.2 359 59.3
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 2.2e-98 363.2 360 57.5
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 2.2e-98 363.2 358 59.2
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 2.2e-98 363.2 358 57.3
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 2.9e-98 362.8 356 58.1
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 3.7e-98 362.5 357 59.9
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.9e-98 362.1 353 56.9
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 6.4e-98 361.7 352 58.8
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 8.3e-98 361.3 353 57.5
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 2.4e-97 359.8 359 58.2
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 2.4e-97 359.8 362 57.5
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 4.1e-97 359.0 362 60.8
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 7.1e-97 358.2 354 58.2
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 2.1e-96 356.7 361 56.2
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 2.1e-96 356.7 360 56.9
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 2.7e-96 356.3 354 58.8
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 4.6e-96 355.5 359 57.4
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 6.0e-96 355.1 356 57.6
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.3e-95 353.2 356 56.5
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 3.0e-95 352.8 363 56.7
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 3.0e-95 352.8 356 58.4
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.9e-95 352.4 304 62.5
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 8.6e-95 351.3 361 58.2
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 8.6e-95 351.3 357 57.7
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.1e-94 350.9 368 57.1
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 1.1e-94 350.9 356 57.0
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.5e-94 349.7 361 57.3
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.5e-94 349.7 355 57.5
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 4.3e-94 349.0 375 56.8
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.6e-94 348.6 357 57.4
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 5.6e-94 348.6 360 57.5
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 9.5e-94 347.8 360 57.5
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 1.2e-93 347.4 357 57.4
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 1.6e-93 347.1 346 58.1
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 1.6e-93 347.1 346 58.1
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.1e-93 346.7 356 55.1
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 2.8e-93 346.3 349 57.9
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 4.7e-93 345.5 355 57.7
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.2e-93 345.1 358 55.0
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 1.8e-92 343.6 356 57.9
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 2.3e-92 343.2 357 56.9
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.3e-92 343.2 357 56.6
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 5.2e-92 342.0 362 55.2
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 1.2e-91 340.9 357 55.7
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 4.4e-91 339.0 354 55.1
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 9.9e-91 337.8 361 56.0
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 8.4e-90 334.7 405 50.9
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 8.4e-90 334.7 354 53.7
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.3e-87 327.4 353 53.0
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 6.6e-87 325.1 377 52.0
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 1.9e-86 323.6 367 52.9
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 3.3e-86 322.8 365 52.1
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.6e-85 320.5 348 55.2
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.6e-85 320.5 348 55.2
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 6.2e-85 318.5 350 52.6
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 8.1e-85 318.2 360 52.2
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 1.8e-84 317.0 356 51.1
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 3.1e-84 316.2 355 52.1
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.4e-81 307.4 350 50.3
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 1.0e-79 301.2 291 58.8
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 1.0e-79 301.2 300 57.7
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 1.2e-64 251.1 383 44.6
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.3e-62 242.7 253 56.1
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 2.1e-61 240.4 230 60.0
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.8e-60 237.3 252 52.8
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 3.4e-59 233.0 372 42.7
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 4.5e-59 232.6 369 43.6
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 5.5e-57 225.7 365 42.2
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 1.0e-55 221.5 346 45.7
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 5.7e-54 215.7 257 48.6
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 5.3e-52 209.1 186 59.7
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.3e-50 204.5 215 54.9
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 1.7e-50 204.1 208 58.2
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 2.2e-50 203.8 264 48.5
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.9e-49 200.7 278 48.2
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 1.4e-44 184.5 177 53.7
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 9.4e-41 171.8 232 46.6
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 1.2e-40 171.4 387 34.9
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 7.4e-38 162.2 230 43.0
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 1.1e-28 131.7 351 33.9
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 3.2e-25 120.2 83 67.5
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 1.0e-23 115.2 81 60.5
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 2.3e-23 114.0 182 39.6
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 2.3e-23 114.0 85 62.4
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 4.0e-23 113.2 81 59.3
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 4.8e-21 106.3 106 48.1
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 8.2e-21 105.5 378 30.7
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 1.5e-17 94.7 78 52.6
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 2.5e-17 94.0 121 41.3
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 3.2e-17 93.6 55 78.2
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 1.5e-14 84.7 72 55.6
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 1.3e-13 81.6 79 43.0
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.1e-12 78.6 81 49.4
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.4e-12 78.2 41 87.8
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.8e-12 77.8 112 47.3
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.7e-11 73.9 164 29.3
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 7.2e-09 65.9 80 48.8
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 2.3e-07 60.8 42 61.9
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 5.2e-07 59.7 53 49.1


User provided reference genes

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