Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 0.0e+00 1130.2 641 100.0
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 8.5e-189 664.5 739 54.0
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 3.8e-173 612.5 650 58.2
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 1.1e-148 531.2 622 57.2
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 1.2e-142 511.1 617 50.6
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 7.8e-142 508.4 622 50.5
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 1.0e-141 508.1 626 49.2
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 2.3e-141 506.9 435 62.3
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 6.6e-141 505.4 639 50.4
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 8.6e-141 505.0 711 46.6
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 3.3e-140 503.1 729 45.4
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 3.4e-137 493.0 630 48.3
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 7.5e-137 491.9 492 56.7
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 1.3e-136 491.1 619 50.9
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 3.5e-134 483.0 635 49.8
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 1.3e-133 481.1 632 48.4
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 3.0e-133 479.9 627 47.5
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 3.9e-133 479.6 612 48.4
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 1.9e-132 477.2 625 49.6
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 3.1e-130 469.9 643 46.8
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 3.1e-130 469.9 484 57.0
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 3.1e-130 469.9 375 66.7
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 4.0e-130 469.5 659 45.1
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 5.2e-130 469.2 611 47.6
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 8.9e-130 468.4 608 48.8
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 3.4e-129 466.5 636 48.3
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 9.8e-129 464.9 622 47.4
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 2.9e-128 463.4 629 48.5
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 1.4e-127 461.1 627 48.3
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 1.9e-127 460.7 344 64.0
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 5.4e-127 459.1 309 70.9
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 2.1e-126 457.2 652 45.4
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 2.7e-126 456.8 682 45.3
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 6.0e-126 455.7 414 62.6
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 7.8e-126 455.3 642 46.1
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 1.3e-125 454.5 605 46.9
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 1.7e-125 454.1 585 48.0
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 3.0e-125 453.4 615 48.3
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 3.0e-125 453.4 315 68.6
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 3.9e-125 453.0 503 53.3
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 6.6e-125 452.2 614 47.9
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 6.6e-125 452.2 643 50.4
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 8.6e-125 451.8 366 64.8
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 1.5e-124 451.1 613 46.0
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 1.9e-124 450.7 647 45.4
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 5.6e-124 449.1 646 50.5
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 9.5e-124 448.4 320 69.1
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 1.6e-123 447.6 652 48.2
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 4.7e-123 446.0 305 71.1
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 2.3e-122 443.7 392 62.0
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 4.0e-122 443.0 425 59.3
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 5.2e-122 442.6 652 44.9
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 5.2e-122 442.6 619 45.7
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 1.2e-121 441.4 375 62.9
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 3.4e-121 439.9 631 46.3
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 9.9e-121 438.3 663 44.9
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 3.7e-120 436.4 305 68.9
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 6.4e-120 435.6 703 44.0
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 8.3e-120 435.3 334 66.8
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 1.6e-118 431.0 551 47.9
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 2.1e-118 430.6 402 57.7
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 4.3e-116 422.9 649 44.2
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 7.3e-116 422.2 459 54.2
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 9.5e-116 421.8 482 52.1
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 1.1e-114 418.3 619 43.6
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 9.9e-113 411.8 373 59.5
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 1.3e-112 411.4 386 57.5
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 6.4e-112 409.1 600 44.7
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 4.2e-111 406.4 399 56.4
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 5.4e-111 406.0 305 65.6
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 9.2e-111 405.2 305 65.2
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 2.7e-110 403.7 306 64.4
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 2.7e-110 403.7 724 38.8
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 7.8e-110 402.1 356 60.1
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.7e-109 401.0 278 68.3
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.9e-108 397.5 305 63.6
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.5e-108 397.1 305 63.6
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 1.6e-107 394.4 420 53.1
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 1.6e-107 394.4 696 41.4
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.6e-107 394.4 431 51.7
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 4.7e-107 392.9 310 61.3
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 5.3e-106 389.4 427 53.6
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 3.4e-105 386.7 482 49.6
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 3.4e-105 386.7 482 49.6
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 1.7e-104 384.4 659 40.8
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 2.9e-104 383.6 603 43.0
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 6.4e-104 382.5 645 41.7
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 6.4e-104 382.5 482 49.0
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 1.3e-101 374.8 350 54.0
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 1.3e-101 374.8 668 42.8
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 3.9e-101 373.2 368 56.0
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 2.1e-99 367.5 391 51.9
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.8e-98 364.4 302 57.9
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 3.1e-98 363.6 468 46.2
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 8.4e-96 355.5 694 38.9
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 1.4e-95 354.8 466 45.7
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 1.4e-95 354.8 466 45.7
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 1.9e-95 354.4 478 44.1
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 2.8e-91 340.5 472 44.7
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 8.1e-91 339.0 604 39.4
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 1.5e-89 334.7 452 44.0
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 7.6e-89 332.4 300 60.0
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 3.8e-88 330.1 472 43.9
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 1.2e-86 325.1 366 50.3
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 4.6e-86 323.2 358 49.2
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 3.8e-80 303.5 638 37.9
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.4e-79 301.6 516 40.7
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 3.5e-78 297.0 364 48.6
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 6.1e-78 296.2 337 46.9
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 3.9e-77 293.5 348 41.7
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 1.4e-74 285.0 543 36.6
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.5e-71 274.2 586 37.4
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 4.2e-71 273.5 499 39.9
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 6.3e-67 259.6 306 51.3
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.3e-61 241.1 290 50.0
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 4.8e-59 233.4 146 77.4
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 7.7e-57 226.1 486 35.6
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 4.2e-55 220.3 282 44.3
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 8.0e-46 189.5 123 78.9
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 3.7e-43 180.6 388 31.7
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 2.1e-38 164.9 282 36.2
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.3e-27 129.0 93 72.0
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 8.3e-27 126.3 104 61.5
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.1e-26 125.9 184 40.8
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.7e-25 121.3 120 54.2
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 8.0e-22 109.8 73 74.0
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 3.7e-19 100.9 62 69.4
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.9e-15 88.6 69 56.5
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 5.1e-08 63.9 54 51.9
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.9e-07 62.0 52 59.6
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 1.6e-06 58.9 37 67.6
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 6.2e-06 57.0 45 64.4


User provided reference genes

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