Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.4e-108 396.4 205 100.0
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 1.5e-91 339.7 186 92.5
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 2.1e-85 319.3 186 88.2
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 4.2e-81 305.1 180 83.9
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 5.4e-81 304.7 184 78.8
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 1.6e-80 303.1 184 79.3
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 6.0e-80 301.2 184 78.8
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 7.9e-80 300.8 184 80.4
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 7.9e-80 300.8 184 80.4
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 3.0e-79 298.9 184 79.9
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 3.0e-79 298.9 184 79.3
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 5.1e-79 298.1 184 79.3
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 6.7e-79 297.7 184 79.3
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 2.5e-78 295.8 184 78.3
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 5.6e-78 294.7 184 78.3
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 7.4e-78 294.3 184 77.7
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 7.4e-78 294.3 184 77.7
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 1.3e-77 293.5 180 79.4
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 1.3e-77 293.5 184 77.2
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.6e-77 293.1 184 77.7
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 1.6e-77 293.1 184 76.1
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 2.1e-77 292.7 184 77.7
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 3.6e-77 292.0 186 77.4
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 3.6e-77 292.0 184 77.7
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 3.6e-77 292.0 184 77.2
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 4.8e-77 291.6 184 78.3
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.1e-77 290.8 184 77.7
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 8.1e-77 290.8 184 77.2
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-76 290.4 184 77.7
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 1.1e-76 290.4 184 78.3
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 1.1e-76 290.4 184 76.1
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 1.4e-76 290.0 184 77.7
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 1.4e-76 290.0 184 77.7
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 1.4e-76 290.0 184 77.2
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.8e-76 289.7 186 76.3
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 2.4e-76 289.3 184 76.6
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 3.1e-76 288.9 184 77.2
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 3.1e-76 288.9 186 78.0
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 3.1e-76 288.9 186 75.8
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 3.1e-76 288.9 182 77.5
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 4.0e-76 288.5 184 73.9
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 4.0e-76 288.5 184 76.1
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 6.9e-76 287.7 180 78.3
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 6.9e-76 287.7 186 75.3
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 6.9e-76 287.7 184 76.6
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 6.9e-76 287.7 184 76.6
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 9.0e-76 287.3 184 77.2
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.5e-75 286.6 182 78.6
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 2.6e-75 285.8 184 76.6
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 2.6e-75 285.8 184 75.5
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 5.8e-75 284.6 186 76.9
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 1.3e-74 283.5 184 74.5
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.3e-74 283.5 184 74.5
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.7e-74 283.1 184 74.5
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.7e-74 283.1 184 75.0
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.7e-74 283.1 184 75.0
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.9e-74 282.3 184 74.5
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 2.9e-74 282.3 184 74.5
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 2.9e-74 282.3 184 75.5
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 2.9e-74 282.3 184 75.0
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 3.8e-74 282.0 182 76.9
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 4.9e-74 281.6 184 73.4
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 4.9e-74 281.6 184 76.1
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 4.9e-74 281.6 184 73.9
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 4.9e-74 281.6 184 75.5
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 6.4e-74 281.2 184 75.5
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 1.4e-73 280.0 184 75.0
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.4e-73 280.0 184 75.0
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 1.9e-73 279.6 182 75.3
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 2.4e-73 279.3 185 75.7
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 2.4e-73 279.3 180 77.8
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 3.2e-73 278.9 185 76.8
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 4.2e-73 278.5 186 74.7
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 4.2e-73 278.5 184 75.5
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 7.1e-73 277.7 185 74.6
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 7.1e-73 277.7 185 76.2
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 2.1e-72 276.2 196 72.4
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 2.1e-72 276.2 182 76.4
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 2.7e-72 275.8 186 75.8
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 3.5e-72 275.4 196 72.4
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 3.5e-72 275.4 196 72.4
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 3.5e-72 275.4 184 71.7
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 3.5e-72 275.4 185 74.1
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 6.0e-72 274.6 185 73.5
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 1.8e-71 273.1 183 72.7
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 1.8e-71 273.1 184 70.7
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 3.9e-71 271.9 184 70.7
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 3.9e-71 271.9 185 71.9
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 8.7e-71 270.8 184 71.7
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 9.6e-70 267.3 185 70.8
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 3.1e-68 262.3 184 69.6
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 6.9e-68 261.2 178 73.6
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.6e-67 259.2 184 71.7
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 4.5e-67 258.5 184 69.6
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 4.5e-67 258.5 184 69.6
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 1.0e-66 257.3 184 69.6
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 2.2e-66 256.1 184 69.0
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 3.8e-66 255.4 181 69.6
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 5.1e-63 245.0 185 67.0
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 5.1e-63 245.0 185 67.0
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 2.1e-61 239.6 186 61.3
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 8.7e-55 217.6 132 80.3
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 2.5e-54 216.1 184 59.2
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 9.7e-54 214.2 187 57.2
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 1.6e-53 213.4 178 59.0
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 3.8e-50 202.2 121 77.7
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.6e-48 196.8 130 74.6
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 3.9e-47 192.2 162 60.5
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 5.1e-47 191.8 135 74.1
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 8.8e-47 191.0 162 63.0
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 2.0e-46 189.9 181 50.8
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 5.7e-46 188.3 177 54.8
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 4.1e-44 182.2 113 75.2
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.1e-44 181.0 189 57.1
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.2e-43 180.6 158 62.7
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 7.7e-43 177.9 182 51.1
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 7.7e-43 177.9 102 82.4
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.7e-42 176.8 176 57.4
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 1.2e-35 154.1 83 86.7
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 1.6e-35 153.7 94 78.7
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 1.6e-35 153.7 113 64.6
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 5.9e-35 151.8 107 68.2
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 1.8e-23 113.6 129 46.5
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 5.2e-23 112.1 186 37.1
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 5.0e-18 95.5 65 72.3
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.9e-17 93.6 65 70.8
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 3.2e-17 92.8 56 80.4
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 1.4e-15 87.4 53 77.4
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 4.5e-11 72.4 56 66.1
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.9e-09 67.0 69 50.7
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.6e-08 63.9 30 96.7
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 6.8e-07 58.5 61 54.1
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 1.5e-06 57.4 30 83.3


User provided reference genes

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