Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0228391 Helianthus annuus HOM05D002708 ORTHO05D018503 9.6e-25 115.9 55 100.0
HanXRQChr08g0228401 Helianthus annuus HOM05D002708 ORTHO05D018503 9.6e-25 115.9 55 100.0
HanXRQChr04g0104441 Helianthus annuus HOM05D002708 ORTHO05D018503 2.5e-17 91.3 43 97.7
HanXRQChr03g0088081 Helianthus annuus HOM05D002708 ORTHO05D003516 7.6e-14 79.7 77 54.5
ECA248G0935 Erigeron canadensis HOM05D002708 ORTHO05D003516 2.5e-12 74.7 77 51.9
Lsat_1_v5_gn_1_83221 Lactuca sativa HOM05D002708 ORTHO05D003516 2.5e-12 74.7 77 51.9
Lj9A548G53 Lonicera japonica HOM05D002708 ORTHO05D003516 2.5e-12 74.7 77 51.9
HanXRQChr11g0341881 Helianthus annuus HOM05D002708 ORTHO05D003516 5.5e-12 73.6 77 50.6
CAN.G1480.4 Capsicum annuum HOM05D002708 ORTHO05D003516 7.1e-12 73.2 77 51.9
Actinidia21606 Actinidia chinensis HOM05D002708 ORTHO05D003516 9.3e-12 72.8 61 57.4
DCAR_029539 Daucus carota HOM05D002708 ORTHO05D003516 1.6e-11 72.0 77 50.6
HanXRQChr11g0352181 Helianthus annuus HOM05D002708 ORTHO05D003516 1.6e-11 72.0 77 49.4
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 1.6e-11 72.0 77 50.6
CSS0041941 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 2.1e-11 71.6 77 50.6
Dinv43572 Davidia involucrata HOM05D002708 ORTHO05D003516 2.1e-11 71.6 42 76.2
Lsat_1_v5_gn_7_11740 Lactuca sativa HOM05D002708 ORTHO05D003516 2.1e-11 71.6 77 49.4
Nitab4.5_0001476g0150 Nicotiana tabacum HOM05D002708 ORTHO05D003516 2.1e-11 71.6 77 50.6
Nitab4.5_0012432g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 2.1e-11 71.6 77 50.6
Peaxi162Scf01124g00013 Petunia axillaris HOM05D002708 ORTHO05D003516 2.1e-11 71.6 77 50.6
Solyc01g088370.3 Solanum lycopersicum HOM05D002708 ORTHO05D003516 2.1e-11 71.6 77 50.6
Sopen01g035200 Solanum pennellii HOM05D002708 ORTHO05D003516 2.1e-11 71.6 77 50.6
PGSC0003DMG400001674 Solanum tuberosum HOM05D002708 ORTHO05D003516 2.1e-11 71.6 77 50.6
Haze_24936 Corylus avellana HOM05D002708 ORTHO05D003516 2.7e-11 71.2 77 49.4
ECA248G3827 Erigeron canadensis HOM05D002708 ORTHO05D003516 2.7e-11 71.2 77 49.4
Nitab4.5_0009957g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 2.7e-11 71.2 42 76.2
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 3.5e-11 70.9 77 48.1
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 4.6e-11 70.5 77 46.8
Dinv44002 Davidia involucrata HOM05D002708 ORTHO05D003516 6.1e-11 70.1 77 49.4
QL02p018118 Quercus lobata HOM05D002708 ORTHO05D003516 6.1e-11 70.1 77 48.1
vmacro21095 Vaccinium macrocarpon HOM05D002708 ORTHO05D003516 7.9e-11 69.7 42 73.8
Oeu002888.1 Olea europaea HOM05D002708 ORTHO05D003516 1.0e-10 69.3 77 46.8
Thecc.02G010700 Theobroma cacao HOM05D002708 ORTHO05D003516 1.0e-10 69.3 77 48.1
TAR375G0643 Trochodendron aralioides HOM05D002708 ORTHO05D003516 1.0e-10 69.3 42 73.8
Aqoxy7G03410 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 1.3e-10 68.9 77 48.1
MSTRG.20407 Avicennia marina HOM05D002708 ORTHO05D003516 1.3e-10 68.9 42 71.4
Ciclev10007609m.g Citrus clementina HOM05D002708 ORTHO05D003516 1.3e-10 68.9 77 48.1
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 1.3e-10 68.9 77 46.8
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 1.3e-10 68.9 77 46.8
Medtr3g105430 Medicago truncatula HOM05D002708 ORTHO05D003516 1.3e-10 68.9 77 46.8
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 1.8e-10 68.6 42 71.4
Migut.B01470 Erythranthe guttata HOM05D002708 ORTHO05D003516 1.8e-10 68.6 77 48.1
Eucgr.J02249 Eucalyptus grandis HOM05D002708 ORTHO05D003516 1.8e-10 68.6 77 48.1
Psat5g034880 Pisum sativum HOM05D002708 ORTHO05D003516 1.8e-10 68.6 77 45.5
TPR.G21430 Trifolium pratense HOM05D002708 ORTHO05D003516 1.8e-10 68.6 77 46.8
Cfa017363 Carpinus fangiana HOM05D002708 ORTHO05D003516 2.3e-10 68.2 77 46.8
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 2.3e-10 68.2 42 69.0
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 2.3e-10 68.2 42 69.0
Haze_20811 Corylus avellana HOM05D002708 ORTHO05D003516 2.3e-10 68.2 77 46.8
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 2.3e-10 68.2 42 69.0
Peaxi162Scf01124g00123 Petunia axillaris HOM05D002708 ORTHO05D003516 2.3e-10 68.2 42 71.4
CSS0024835 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 3.9e-10 67.4 77 48.1
CSS0039264 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 3.9e-10 67.4 77 48.1
Cfa002667 Carpinus fangiana HOM05D002708 ORTHO05D003516 3.9e-10 67.4 77 46.8
Cfa013020 Carpinus fangiana HOM05D002708 ORTHO05D003516 3.9e-10 67.4 77 46.8
Dinv09576 Davidia involucrata HOM05D000985 ORTHO05D018503 3.9e-10 67.4 47 66.0
Nn3g18494 Nelumbo nucifera HOM05D002708 ORTHO05D003516 3.9e-10 67.4 42 71.4
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 3.9e-10 67.4 42 69.0
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 3.9e-10 67.4 42 69.0
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 3.9e-10 67.4 42 69.0
MBI19_g28098_MAGBIO Magnolia biondii HOM05D002708 ORTHO05D003516 5.1e-10 67.0 77 48.1
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 5.1e-10 67.0 76 47.4
Sc20g0000810 Simmondsia chinensis HOM05D002708 ORTHO05D003516 5.1e-10 67.0 77 45.5
CiPaw.08G004600 Carya illinoinensis HOM05D002708 ORTHO05D003516 6.7e-10 66.6 77 44.2
Duzib052G0664 Durio zibethinus HOM05D002708 ORTHO05D003516 6.7e-10 66.6 42 66.7
Glyma.07G107700 Glycine max HOM05D002708 ORTHO05D003516 6.7e-10 66.6 77 45.5
Lalb_Chr08g0244681 Lupinus albus HOM05D002708 ORTHO05D003516 6.7e-10 66.6 77 44.2
Nn4g24628 Nelumbo nucifera HOM05D002708 ORTHO05D003516 6.7e-10 66.6 77 48.1
Phvul.009G084000 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 6.7e-10 66.6 77 45.5
Phvul.009G084100 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 6.7e-10 66.6 77 45.5
Potri.018G015200 Populus trichocarpa HOM05D002708 ORTHO05D003516 6.7e-10 66.6 77 46.8
SalBow5G4312 Salvia bowleyana HOM05D002708 ORTHO05D003516 6.7e-10 66.6 42 66.7
unitig_0.g1327 Utricularia gibba HOM05D002708 ORTHO05D003516 6.7e-10 66.6 77 46.8
VMungo1309G2216 Vigna mungo HOM05D002708 ORTHO05D003516 6.7e-10 66.6 77 45.5
Cpa.g.sc17.146 Carica papaya HOM05D002708 ORTHO05D003516 8.7e-10 66.2 77 45.5
Ca_15806_v3 Cicer arietinum L. HOM05D002708 ORTHO05D003516 8.7e-10 66.2 42 66.7
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 8.7e-10 66.2 77 45.5
TWI32G0606 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 8.7e-10 66.2 77 44.2
arahy.Tifrunner.gnm1.ann1.9YLT9A Arachis hypogaea HOM05D002708 ORTHO05D003516 1.1e-09 65.9 77 44.2
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 1.1e-09 65.9 77 44.2
EL10Ac4g08928 Beta vulgaris HOM05D002708 ORTHO05D003516 1.1e-09 65.9 42 64.3
EL10Ac5g11414 Beta vulgaris HOM05D002708 ORTHO05D003516 1.1e-09 65.9 42 64.3
AUR62004771 Chenopodium quinoa HOM05D002708 ORTHO05D003516 1.1e-09 65.9 42 64.3
AUR62037481 Chenopodium quinoa HOM05D002708 ORTHO05D003516 1.1e-09 65.9 42 64.3
Glyma.03G002400 Glycine max HOM05D002708 ORTHO05D003516 1.1e-09 65.9 77 45.5
Gohir.A12G046100 Gossypium hirsutum HOM05D002708 ORTHO05D003516 1.1e-09 65.9 77 45.5
Gohir.D12G045200 Gossypium hirsutum HOM05D002708 ORTHO05D003516 1.1e-09 65.9 77 45.5
Gorai.008G047600 Gossypium raimondii HOM05D002708 ORTHO05D003516 1.1e-09 65.9 77 45.5
Lalb_Chr23g0268061 Lupinus albus HOM05D002708 ORTHO05D003516 1.1e-09 65.9 77 45.5
QL08p065006 Quercus lobata HOM05D002708 ORTHO05D003516 1.1e-09 65.9 77 44.2
arahy.Tifrunner.gnm1.ann1.CBM3F9 Arachis hypogaea HOM05D002708 ORTHO05D003516 1.5e-09 65.5 42 64.3
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 1.5e-09 65.5 42 64.3
Potri.006G267500 Populus trichocarpa HOM05D002708 ORTHO05D003516 1.5e-09 65.5 77 45.5
GSVIVG01036012001 Vitis vinifera HOM05D002708 ORTHO05D003516 1.5e-09 65.5 77 46.8
Prupe.6G358600 Prunus persica HOM05D002708 ORTHO05D003516 1.9e-09 65.1 77 44.2
SGA_v2.0_scaffold85G26804 Striga asiatica HOM05D002708 ORTHO05D003516 1.9e-09 65.1 77 44.2
MELO3C013234.2 Cucumis melo HOM05D002708 ORTHO05D003516 2.5e-09 64.7 42 64.3
ClCG09G010530 Citrullus lanatus HOM05D002708 ORTHO05D003516 3.3e-09 64.3 42 61.9
Gohir.A03G216900 Gossypium hirsutum HOM05D002708 ORTHO05D003516 3.3e-09 64.3 77 45.5
Mapoly0108s0028 Marchantia polymorpha HOM05D002708 ORTHO05D003516 3.3e-09 64.3 76 43.4
Gohir.D02G238500 Gossypium hirsutum HOM05D002708 ORTHO05D003516 5.7e-09 63.5 77 45.5
Gorai.005G267000 Gossypium raimondii HOM05D002708 ORTHO05D003516 5.7e-09 63.5 77 45.5
Pp3c11_25960 Physcomitrium patens HOM05D002708 ORTHO05D003516 5.7e-09 63.5 77 45.5
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 5.7e-09 63.5 77 42.9
QL02p018221 Quercus lobata HOM05D002708 ORTHO05D003516 5.7e-09 63.5 41 65.9
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 5.7e-09 63.5 77 42.9
Sed0015739 Sechium edule HOM05D002708 ORTHO05D003516 7.4e-09 63.2 42 61.9
CANSAT25G3904 Cannabis sativa HOM05D002708 ORTHO05D003516 9.7e-09 62.8 77 42.9
COL.COLO4_17667 Corchorus olitorius HOM05D002708 ORTHO05D003516 9.7e-09 62.8 77 44.2
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 9.7e-09 62.8 42 64.3
MD04G1241100 Malus domestica HOM05D002708 ORTHO05D003516 9.7e-09 62.8 42 61.9
MD12G1258100 Malus domestica HOM05D002708 ORTHO05D003516 9.7e-09 62.8 42 61.9
TWI63G0006 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 1.3e-08 62.4 77 42.9
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 1.6e-08 62.0 42 59.5
FvH4_6g00800 Fragaria vesca HOM05D002708 ORTHO05D003516 1.6e-08 62.0 77 41.6
FAN02G3944 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.6e-08 62.0 77 41.6
FAN05G3540 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.6e-08 62.0 77 41.6
FAN09G1379 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.6e-08 62.0 77 41.6
FAN14G3709 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.6e-08 62.0 77 41.6
Pp3c7_370 Physcomitrium patens HOM05D002708 ORTHO05D003516 2.2e-08 61.6 77 42.9
SMO270G0119 Selaginella moellendorffii HOM05D002708 ORTHO05D003516 2.2e-08 61.6 42 69.0
ATR0794G148 Amborella trichopoda HOM05D002708 ORTHO05D003516 4.8e-08 60.5 77 42.9
Rhsim01G0145200 Rhododendron simsii HOM05D002708 ORTHO05D003516 4.8e-08 60.5 77 46.8
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 4.8e-08 60.5 42 61.9
Atru.chr7.2587 Acer truncatum HOM05D002708 ORTHO05D003516 6.3e-08 60.1 77 45.5
AagrBONN_evm.TU.Sc2ySwM_117.472 Anthoceros agrestis HOM05D002708 ORTHO05D003516 8.2e-08 59.7 77 41.6
SGA_v2.0_scaffold578G53025 Striga asiatica HOM05D002708 ORTHO05D003516 8.2e-08 59.7 78 43.6
SEGI_02227 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.1e-07 59.3 42 61.9
SEGI_26246 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.1e-07 59.3 42 61.9
SEGI_28578 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.1e-07 59.3 42 61.9
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 1.4e-07 58.9 77 41.6
Os10g0569200 Oryza sativa ssp. japonica HOM05D002708 ORTHO05D003516 4.1e-07 57.4 42 59.5
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
AL6G38780 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
AL6G39390 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
AT5G25780 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
AT5G27640 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
BcaB06g28016 Brassica carinata HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
BcaC02g08409 Brassica carinata HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
BcaC07g40905 Brassica carinata HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
A04p19190 Brassica napus HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
A09p56110 Brassica napus HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
C04p54590 Brassica napus HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
C08p39040 Brassica napus HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
BolC4t27001H Brassica oleracea HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
BolC8t51477H Brassica oleracea HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
BraA04t17520Z Brassica rapa HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
BraA09t41006Z Brassica rapa HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
Carub.0006s2495 Capsella rubella HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
Sp4g03800 Schrenkiella parvula HOM05D002708 ORTHO05D003516 6.9e-07 56.6 42 57.1
Thhalv10000061m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 9.0e-07 56.2 41 58.5
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 1.5e-06 55.5 42 54.8
THA.LOC104803605 Tarenaya hassleriana HOM05D002708 ORTHO05D003516 1.5e-06 55.5 42 54.8
Sed0010327 Sechium edule HOM05D002708 ORTHO05D003516 2.0e-06 55.1 41 53.7
SEGI_19659 Sequoiadendron giganteum HOM05D002708 ORTHO05D018503 2.0e-06 55.1 42 57.1
CARHR294550 Cardamine hirsuta HOM05D002708 ORTHO05D003516 4.5e-06 53.9 42 54.8
Nitab4.5_0015087g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 4.5e-06 53.9 71 45.1
HPP92_028477 Vanilla planifolia HOM05D002708 ORTHO05D003516 1.0e-05 52.8 36 66.7


User provided reference genes

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