Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0226751 Helianthus annuus HOM05D005235 ORTHO05D006938 2.9e-271 937.9 473 100.0
Lsat_1_v5_gn_6_15261 Lactuca sativa HOM05D005235 ORTHO05D006938 1.1e-214 750.0 497 76.5
ECA233G3576 Erigeron canadensis HOM05D005235 ORTHO05D006938 3.6e-205 718.4 480 76.5
Eucgr.I01565 Eucalyptus grandis HOM05D005235 ORTHO05D006938 3.0e-191 672.2 437 76.2
Gohir.A01G046600 Gossypium hirsutum HOM05D005235 ORTHO05D006938 8.7e-191 670.6 434 75.8
Gohir.D01G037300 Gossypium hirsutum HOM05D005235 ORTHO05D006938 1.5e-190 669.8 434 75.6
COL.COLO4_17457 Corchorus olitorius HOM05D005235 ORTHO05D000503 1.3e-189 666.8 459 72.3
Gorai.002G045400 Gossypium raimondii HOM05D005235 ORTHO05D006938 3.7e-189 665.2 434 75.3
Dinv25083 Davidia involucrata HOM05D005235 ORTHO05D006938 4.8e-189 664.8 447 74.0
PGR142G4255 Punica granatum HOM05D005235 ORTHO05D006938 4.8e-189 664.8 467 71.5
PSO566G0178 Papaver somniferum HOM05D005235 ORTHO05D006938 6.2e-189 664.5 432 75.7
Thecc.07G135900 Theobroma cacao HOM05D005235 ORTHO05D006938 5.3e-188 661.4 427 76.1
Duzib213G0463 Durio zibethinus HOM05D005235 ORTHO05D006938 9.0e-188 660.6 433 74.6
Cc03_g16140 Coffea canephora HOM05D005235 ORTHO05D006938 3.4e-187 658.7 443 74.3
CsaV3_4G004390 Cucumis sativus L. HOM05D005235 ORTHO05D006938 4.5e-187 658.3 444 75.0
vmacro22930 Vaccinium macrocarpon HOM05D005235 ORTHO05D006938 7.6e-187 657.5 492 69.1
Sc01g0007490 Simmondsia chinensis HOM05D005235 ORTHO05D006938 1.7e-186 656.4 438 74.4
Sopen07g004450 Solanum pennellii HOM05D005235 ORTHO05D006938 1.7e-186 656.4 501 67.7
MELO3C017627.2 Cucumis melo HOM05D005235 ORTHO05D006938 4.9e-186 654.8 476 70.4
Medtr4g121070 Medicago truncatula HOM05D005235 ORTHO05D006938 6.5e-186 654.4 474 71.1
ClCG07G017190 Citrullus lanatus HOM05D005235 ORTHO05D006938 8.4e-186 654.1 431 75.9
Oeu061455.1 Olea europaea HOM05D005235 ORTHO05D006938 1.1e-185 653.7 432 75.7
TAR626G0946 Trochodendron aralioides HOM05D005235 ORTHO05D006938 1.1e-185 653.7 461 71.6
PGSC0003DMG400022992 Solanum tuberosum HOM05D005235 ORTHO05D006938 1.4e-185 653.3 501 67.1
Nitab4.5_0000949g0050 Nicotiana tabacum HOM05D005235 ORTHO05D006938 1.9e-185 652.9 444 72.5
Nitab4.5_0000491g0060 Nicotiana tabacum HOM05D005235 ORTHO05D006938 3.2e-185 652.1 442 72.4
CAN.G192.3 Capsicum annuum HOM05D005235 ORTHO05D006938 4.2e-185 651.7 442 73.5
PSO173G0108 Papaver somniferum HOM05D005235 ORTHO05D006938 4.2e-185 651.7 469 70.6
Peaxi162Scf01038g00005 Petunia axillaris HOM05D005235 ORTHO05D006938 4.2e-185 651.7 473 68.3
TPR.G24949 Trifolium pratense HOM05D005235 ORTHO05D006938 5.5e-185 651.4 476 71.2
Manes.04G096400 Manihot esculenta HOM05D005235 ORTHO05D006938 7.1e-185 651.0 465 70.8
Solyc07g008530.1 Solanum lycopersicum HOM05D005235 ORTHO05D006938 1.2e-184 650.2 501 66.9
Rhsim08G0037300 Rhododendron simsii HOM05D005235 ORTHO05D006938 2.1e-184 649.4 456 71.1
Aqoxy1G00862 Aquilegia oxysepala HOM05D005235 ORTHO05D006938 2.7e-184 649.0 454 71.4
CANSAT21G0039 Cannabis sativa HOM05D005235 ORTHO05D006938 3.5e-184 648.7 432 74.5
Psat5g150600 Pisum sativum HOM05D005235 ORTHO05D006938 3.5e-184 648.7 471 70.9
RcHm_v2.0_Chr7g0221241 Rosa chinensis HOM05D005235 ORTHO05D006938 6.0e-184 647.9 469 70.1
DCAR_005998 Daucus carota HOM05D005235 ORTHO05D006938 7.9e-184 647.5 489 68.3
SalBow4G1042 Salvia bowleyana HOM05D005235 ORTHO05D006938 7.9e-184 647.5 437 74.6
MD15G1428200 Malus domestica HOM05D005235 ORTHO05D006938 1.3e-183 646.7 474 68.4
FvH4_6g39550 Fragaria vesca HOM05D005235 ORTHO05D006938 1.8e-183 646.4 435 73.8
Haze_25416 Corylus avellana HOM05D005235 ORTHO05D006938 3.0e-183 645.6 428 73.8
Medtr3g466250 Medicago truncatula HOM05D005235 ORTHO05D006938 3.0e-183 645.6 472 70.6
Cfa002235 Carpinus fangiana HOM05D005235 ORTHO05D006938 3.9e-183 645.2 440 72.0
THA.LOC104820931 Tarenaya hassleriana HOM05D005235 ORTHO05D006938 3.9e-183 645.2 438 71.7
Glyma.14G202100 Glycine max HOM05D005235 ORTHO05D006938 6.7e-183 644.4 433 74.6
TWI32G1353 Tripterygium wilfordii HOM05D005235 ORTHO05D006938 1.1e-182 643.7 448 70.3
Ah.08g210620 Amaranthus hybridus HOM05D005235 ORTHO05D006938 7.4e-182 641.0 431 72.9
Nn6g33287 Nelumbo nucifera HOM05D005235 ORTHO05D006938 7.4e-182 641.0 454 70.9
AL3G12040 Arabidopsis lyrata HOM05D005235 ORTHO05D006938 9.7e-182 640.6 440 71.8
Prupe.1G572900 Prunus persica HOM05D005235 ORTHO05D006938 9.7e-182 640.6 434 71.2
VMungo0647G1084 Vigna mungo HOM05D005235 ORTHO05D006938 1.6e-181 639.8 478 68.0
MD08G1236200 Malus domestica HOM05D005235 ORTHO05D006938 2.8e-181 639.0 473 67.0
Lj6g0011193 Lotus japonicus HOM05D005235 ORTHO05D006938 4.8e-181 638.3 443 72.9
Sed0026739 Sechium edule HOM05D005235 ORTHO05D006938 4.8e-181 638.3 435 73.1
AT3G02660 Arabidopsis thaliana HOM05D005235 ORTHO05D006938 6.3e-181 637.9 442 71.0
Atru.BG.29.p Acer truncatum HOM05D005235 ORTHO05D006938 1.1e-180 637.1 431 74.2
Lalb_Chr15g0085971 Lupinus albus HOM05D005235 ORTHO05D006938 1.1e-180 637.1 441 72.6
Lj3g0002085 Lotus japonicus HOM05D005235 ORTHO05D006938 1.4e-180 636.7 445 71.9
EL10Ac7g16931 Beta vulgaris HOM05D005235 ORTHO05D006938 1.8e-180 636.3 429 72.3
Ciclev10015023m.g Citrus clementina HOM05D005235 ORTHO05D006938 1.8e-180 636.3 433 72.7
Migut.N01688 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.8e-180 636.3 459 69.7
Ca_15026_v3 Cicer arietinum L. HOM05D005235 ORTHO05D006938 4.1e-180 635.2 445 72.6
Glyma.02G234500 Glycine max HOM05D005235 ORTHO05D006938 5.3e-180 634.8 436 72.9
CSS0000006 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 6.9e-180 634.4 436 73.9
CSS0008907 Camellia sinensis var. sinensis HOM05D005235 ORTHO05D006938 6.9e-180 634.4 436 73.9
FAN13G2026 Fragaria x ananassa HOM05D005235 ORTHO05D006938 6.9e-180 634.4 435 72.4
arahy.Tifrunner.gnm1.ann1.0Z73T7 Arachis hypogaea HOM05D005235 ORTHO05D006938 9.0e-180 634.0 493 67.7
CiPaw.03G253600 Carya illinoinensis HOM05D005235 ORTHO05D006938 9.0e-180 634.0 429 72.3
Potri.014G140400 Populus trichocarpa HOM05D005235 ORTHO05D006938 9.0e-180 634.0 457 68.5
QL10p019537 Quercus lobata HOM05D005235 ORTHO05D006938 9.0e-180 634.0 427 73.8
arahy.Tifrunner.gnm1.ann1.354T1Y Arachis hypogaea HOM05D005235 ORTHO05D006938 1.2e-179 633.6 486 67.5
FvH4_5g28930 Fragaria vesca HOM05D005235 ORTHO05D006938 1.2e-179 633.6 435 72.2
Migut.O00424 Erythranthe guttata HOM05D005235 ORTHO05D006938 1.5e-179 633.3 459 69.7
Sabra14G0105800 Salix brachista HOM05D005235 ORTHO05D006938 3.4e-179 632.1 441 70.1
Hund00893 Selenicereus undatus HOM05D005235 ORTHO05D006938 5.9e-179 631.3 428 72.9
BolC1t05885H Brassica oleracea HOM05D005235 ORTHO05D006938 1.0e-178 630.6 456 68.6
BNapus_Darmor_BZH_scaffold_99p00190 Brassica napus HOM05D005235 ORTHO05D006938 1.3e-178 630.2 456 68.9
CARHR076660 Cardamine hirsuta HOM05D005235 ORTHO05D006938 1.3e-178 630.2 440 70.9
BNapus_Darmor_BZH_scaffold_122p00160 Brassica napus HOM05D005235 ORTHO05D006938 1.7e-178 629.8 456 68.6
AUR62033498 Chenopodium quinoa HOM05D005235 ORTHO05D006938 3.8e-178 628.6 431 71.0
BraA01t04625Z Brassica rapa HOM05D005235 ORTHO05D006938 1.1e-177 627.1 456 68.6
SGA_v2.0_scaffold68G22803 Striga asiatica HOM05D005235 ORTHO05D006938 1.1e-177 627.1 469 68.0
FAN18G1214 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.2e-177 625.5 429 72.3
Lj8A333T11 Lonicera japonica HOM05D005235 ORTHO05D006938 3.2e-177 625.5 432 73.6
Phvul.008G249300 Phaseolus vulgaris HOM05D005235 ORTHO05D006938 3.2e-177 625.5 485 66.2
A03p33070 Brassica napus HOM05D005235 ORTHO05D006938 4.2e-177 625.2 433 70.7
AUR62028546 Chenopodium quinoa HOM05D005235 ORTHO05D006938 9.3e-177 624.0 431 70.5
BraA03t12477Z Brassica rapa HOM05D005235 ORTHO05D006938 2.1e-176 622.9 433 70.2
Aa31LG5G13140 Aethionema arabicum HOM05D005235 ORTHO05D006938 3.6e-176 622.1 436 70.2
Thhalv10020578m.g Eutrema salsugineum HOM05D005235 ORTHO05D006938 4.6e-176 621.7 434 71.2
Sp3g01700 Schrenkiella parvula HOM05D005235 ORTHO05D006938 4.6e-176 621.7 440 69.5
unitig_22.g5329 Utricularia gibba HOM05D005235 ORTHO05D006938 1.3e-175 620.2 433 72.3
FAN08G3020 Fragaria x ananassa HOM05D005235 ORTHO05D006938 3.0e-175 619.0 435 71.5
BcaC01g04429 Brassica carinata HOM05D005235 ORTHO05D006938 1.9e-174 616.3 433 70.0
BolC3t16290H Brassica oleracea HOM05D005235 ORTHO05D006938 1.9e-174 616.3 433 70.0
Actinidia37705 Actinidia chinensis HOM05D005235 ORTHO05D006938 8.2e-173 610.9 444 70.9
MBI04_g19169_MAGBIO Magnolia biondii HOM05D005235 ORTHO05D006938 2.4e-172 609.4 547 60.5
ATR0021G047 Amborella trichopoda HOM05D005235 ORTHO05D006938 9.1e-172 607.4 433 70.0
CDE05G2156 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.0e-170 604.0 440 68.4
CDE05G0570 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.7e-170 603.2 443 67.9
Os01g0500900 Oryza sativa ssp. japonica HOM05D005235 ORTHO05D006938 6.5e-170 601.3 454 66.7
Zm00001eb080850 Zea mays HOM05D005235 ORTHO05D006938 4.2e-169 598.6 497 62.4
Nitab4.5_0004867g0070 Nicotiana tabacum HOM05D000907 ORTHO05D000753 8.8e-167 590.9 460 67.0
Pp3c3_3070 Physcomitrium patens HOM05D005235 ORTHO05D006938 4.8e-165 585.1 425 66.6
AagrBONN_evm.TU.Sc2ySwM_368.429 Anthoceros agrestis HOM05D005235 ORTHO05D006938 8.0e-160 567.8 436 64.2
SMO200G0177 Selaginella moellendorffii HOM05D005235 ORTHO05D006938 1.0e-159 567.4 429 64.3
Mapoly0163s0012 Marchantia polymorpha HOM05D005235 ORTHO05D006938 8.8e-159 564.3 436 64.4
BcaB04g19392 Brassica carinata HOM05D005235 ORTHO05D006938 3.0e-151 539.3 477 60.8
MCO13G625 Micromonas commoda HOM05D005235 ORTHO05D006938 1.5e-145 520.4 436 58.7
TAR633G2758 Trochodendron aralioides HOM05D005235 ORTHO05D006938 8.0e-144 514.6 314 80.3
SEGI_38902 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 1.1e-140 504.2 372 69.1
GSVIVG01023528001 Vitis vinifera HOM05D005235 ORTHO05D006938 1.0e-138 497.7 430 61.6
Cre13.g606050 Chlamydomonas reinhardtii HOM05D005235 ORTHO05D006938 2.5e-137 493.0 433 57.3
PRCOL_00003633 Prasinoderma coloniale HOM05D005235 ORTHO05D006938 8.3e-133 478.0 498 49.8
FAN05G2159 Fragaria x ananassa HOM05D005235 ORTHO05D006938 4.1e-132 475.7 432 58.3
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 4.0e-127 459.1 434 57.6
CBR_g10848 Chara braunii HOM05D005235 ORTHO05D006938 2.2e-125 453.4 483 50.3
arahy.Tifrunner.gnm1.ann1.8HX8KM Arachis hypogaea HOM05D005235 ORTHO05D006938 2.4e-116 423.3 412 56.1
Actinidia19541 Actinidia chinensis HOM05D005235 ORTHO05D006938 3.4e-110 402.9 443 54.0
FAN04G0607 Fragaria x ananassa HOM05D005235 ORTHO05D006938 9.6e-97 358.2 246 72.0
Pp3s58_130 Physcomitrium patens HOM05D005235 ORTHO05D006938 3.1e-87 326.6 427 40.3
BolC1t05886H Brassica oleracea HOM05D005235 ORTHO05D006938 4.3e-81 306.2 398 46.2
Dinv11903 Davidia involucrata HOM05D005235 ORTHO05D006938 9.3e-76 288.5 365 48.2
HPP92_015556 Vanilla planifolia HOM05D005235 ORTHO05D006938 3.1e-71 273.5 282 53.5
C03p40250 Brassica napus HOM05D005235 ORTHO05D006938 2.1e-67 260.8 191 66.0
HPP92_015557 Vanilla planifolia HOM05D005235 ORTHO05D006938 7.4e-65 252.3 174 74.1
BNapus_Darmor_BZH_scaffold_133p00140 Brassica napus HOM05D005235 ORTHO05D032674 5.3e-63 246.1 232 58.2
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 8.5e-61 238.8 464 32.3
BcaC09g47648 Brassica carinata HOM05D005235 ORTHO05D032674 1.0e-58 231.9 324 46.0
Haze_27256 Corylus avellana HOM05D005235 ORTHO05D006938 3.9e-58 229.9 304 41.4
Oeu046079.2 Olea europaea HOM05D002040 ORTHO05D002502 8.8e-50 202.2 390 36.2
FAN04G0381 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.0e-49 201.1 160 63.1
BraA01t04657Z Brassica rapa HOM05D005235 ORTHO05D032674 2.1e-35 154.5 132 61.4
CDE05G3313 Ceratophyllum demersum HOM05D005235 ORTHO05D006938 1.8e-34 151.4 118 61.0
FAN09G2876 Fragaria x ananassa HOM05D005235 ORTHO05D006938 2.6e-33 147.5 96 71.9
Oeu059313.1 Olea europaea HOM05D005235 ORTHO05D006938 1.1e-23 115.5 79 70.9
SEGI_05348 Sequoiadendron giganteum HOM05D005235 ORTHO05D006938 2.8e-19 100.9 68 69.1
arahy.Tifrunner.gnm1.ann1.J19R9Y Arachis hypogaea HOM05D005235 ORTHO05D038945 1.0e-18 99.0 57 80.7
Thecc.07G136200 Theobroma cacao HOM05D005235 ORTHO05D006938 8.9e-18 95.9 69 63.8
SEGI_33043 Sequoiadendron giganteum HOM05D005235 ORTHO05D008256 7.5e-17 92.8 71 60.6
TAR633G1966 Trochodendron aralioides HOM05D005235 ORTHO05D006938 9.8e-17 92.4 64 64.1
Nn1g04561 Nelumbo nucifera HOM05D005235 ORTHO05D038945 2.4e-15 87.8 85 57.6
Oeu038380.1 Olea europaea HOM05D007843 ORTHO05D003639 1.2e-14 85.5 59 69.5
BolC1t05887H Brassica oleracea HOM05D005235 ORTHO05D014124 9.5e-12 75.9 73 63.0
BNapus_Darmor_BZH_scaffold_119p00120 Brassica napus HOM05D005235 ORTHO05D006938 1.4e-10 72.0 49 67.3
BNapus_Darmor_BZH_scaffold_97p00310 Brassica napus HOM05D005235 ORTHO05D006938 1.4e-10 72.0 49 67.3


User provided reference genes

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