Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 7.3e-185 650.6 371 100.0
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.0e-93 347.8 354 61.3
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 1.2e-83 314.3 392 56.6
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 1.4e-63 247.7 321 47.0
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 7.1e-63 245.4 324 46.6
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 3.5e-62 243.0 320 45.9
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 3.0e-61 240.0 302 47.0
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 5.6e-60 235.7 299 47.5
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 1.3e-59 234.6 342 44.2
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 6.2e-59 232.3 315 45.1
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 3.1e-58 229.9 316 45.3
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 5.3e-58 229.2 332 44.9
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 1.2e-57 228.0 331 42.6
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 2.6e-57 226.9 318 44.3
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 7.6e-57 225.3 319 44.2
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 9.9e-57 224.9 330 43.0
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 1.3e-56 224.6 304 45.4
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 2.2e-56 223.8 304 45.4
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 2.4e-55 220.3 328 43.9
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 2.4e-55 220.3 287 47.7
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 7.1e-55 218.8 329 42.2
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 9.3e-55 218.4 336 42.9
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 9.3e-55 218.4 305 42.6
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 1.2e-54 218.0 309 41.7
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.6e-54 217.6 307 43.3
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 4.6e-54 216.1 335 42.1
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 6.0e-54 215.7 381 41.2
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 1.0e-53 214.9 385 38.4
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.3e-53 214.5 307 43.0
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 2.3e-53 213.8 345 40.0
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 3.9e-53 213.0 320 42.2
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 8.7e-53 211.8 309 45.0
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 1.5e-52 211.1 410 37.3
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 1.9e-52 210.7 300 43.7
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 1.9e-52 210.7 314 40.8
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 4.3e-52 209.5 408 37.0
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 7.4e-52 208.8 320 42.2
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 7.4e-52 208.8 371 45.0
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 7.4e-52 208.8 313 42.2
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 1.6e-51 207.6 325 40.9
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 1.6e-51 207.6 320 45.0
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 3.6e-51 206.5 347 41.8
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 3.6e-51 206.5 380 37.4
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 6.2e-51 205.7 318 40.9
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 6.2e-51 205.7 312 41.7
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 8.1e-51 205.3 323 43.3
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 1.4e-50 204.5 165 60.0
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 1.4e-50 204.5 165 60.0
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 5.3e-50 202.6 331 41.1
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 5.3e-50 202.6 307 43.6
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 9.0e-50 201.8 349 38.4
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 2.6e-49 200.3 332 40.7
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 3.4e-49 199.9 321 39.9
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 3.4e-49 199.9 328 40.9
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 7.6e-49 198.7 228 47.4
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 7.6e-49 198.7 277 43.0
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 2.2e-48 197.2 162 60.5
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 3.8e-48 196.4 329 42.9
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 8.4e-48 195.3 166 59.0
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 1.4e-47 194.5 379 35.4
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 1.9e-47 194.1 371 36.9
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 4.2e-47 193.0 324 40.4
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 1.6e-46 191.0 374 36.6
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 4.6e-46 189.5 403 35.5
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 7.9e-46 188.7 318 40.3
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 7.9e-46 188.7 401 34.9
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 1.3e-45 188.0 236 46.2
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 1.3e-45 188.0 320 40.0
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 2.3e-45 187.2 316 37.3
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 2.3e-45 187.2 394 36.0
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 3.9e-45 186.4 419 33.9
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 8.7e-45 185.3 422 35.5
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 2.5e-44 183.7 385 35.6
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 5.6e-44 182.6 421 33.7
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 9.6e-44 181.8 235 44.3
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 6.2e-43 179.1 419 33.4
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 4.0e-42 176.4 417 33.1
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 4.0e-42 176.4 161 52.2
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 5.3e-42 176.0 267 40.8
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 5.3e-42 176.0 267 40.8
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 6.9e-42 175.6 159 54.1
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 9.0e-42 175.3 155 54.2
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 1.2e-41 174.9 277 40.1
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 1.2e-41 174.9 156 53.2
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 2.6e-41 173.7 171 50.9
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 3.4e-41 173.3 155 53.5
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 5.8e-41 172.6 412 32.8
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 1.3e-40 171.4 263 40.3
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 1.1e-39 168.3 256 38.3
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 2.5e-39 167.2 248 40.3
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 7.1e-39 165.6 303 39.6
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 7.1e-39 165.6 303 39.6
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 1.6e-38 164.5 286 39.2
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 3.5e-38 163.3 271 39.9
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 1.0e-37 161.8 256 43.4
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 2.1e-35 154.1 294 35.7
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 4.8e-35 152.9 230 41.7
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 6.3e-35 152.5 156 48.7
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 3.1e-34 150.2 151 48.3
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 3.8e-32 143.3 330 33.0
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 7.2e-31 139.0 252 38.9
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 2.7e-30 137.1 162 41.4
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 7.9e-30 135.6 157 44.6
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 3.9e-29 133.3 159 46.5
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 5.1e-29 132.9 146 45.9
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 1.4e-26 124.8 126 48.4
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 2.0e-25 120.9 175 38.3
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 2.0e-20 104.4 270 29.3
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 3.1e-18 97.1 240 29.6
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 6.9e-18 95.9 68 64.7
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 2.5e-15 87.4 53 71.7
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 3.3e-12 77.0 60 56.7
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 7.4e-12 75.9 60 56.7
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 5.3e-10 69.7 50 60.0


User provided reference genes

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