Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0197731 Helianthus annuus HOM05D001392 ORTHO05D220584 3.7e-64 248.1 124 100.0
HanXRQChr10g0283681 Helianthus annuus HOM05D001392 ORTHO05D006407 2.0e-22 109.4 167 45.5
Lsat_1_v5_gn_3_65141 Lactuca sativa HOM05D001392 ORTHO05D006407 1.5e-20 103.2 164 43.9
Gohir.D10G255000 Gossypium hirsutum HOM05D001392 ORTHO05D006407 4.4e-17 91.7 133 45.1
Atru.chr1.1875 Acer truncatum HOM05D001392 ORTHO05D006407 5.7e-17 91.3 172 39.5
ECA246G3910 Erigeron canadensis HOM05D001392 ORTHO05D006407 7.5e-17 90.9 167 40.1
Hma1.2p1_0524F.1_g172350 Hydrangea macrophylla HOM05D001392 ORTHO05D006407 2.8e-16 89.0 165 38.8
Thecc.04G116700 Theobroma cacao HOM05D001392 ORTHO05D006407 4.8e-16 88.2 165 38.2
RcHm_v2.0_Chr1g0328051 Rosa chinensis HOM05D001392 ORTHO05D006407 1.1e-15 87.0 170 38.2
Actinidia35731 Actinidia chinensis HOM05D001392 ORTHO05D006407 4.1e-15 85.1 167 37.1
COL.COLO4_09038 Corchorus olitorius HOM05D001392 ORTHO05D006407 4.1e-15 85.1 172 37.8
MELO3C020199.2 Cucumis melo HOM05D001392 ORTHO05D006407 7.0e-15 84.3 136 39.0
Dinv19030 Davidia involucrata HOM05D001392 ORTHO05D006407 7.0e-15 84.3 164 38.4
CSS0004873 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D006407 1.6e-14 83.2 162 36.4
CSS0005968 Camellia sinensis var. sinensis HOM05D001392 ORTHO05D006407 1.6e-14 83.2 162 36.4
Solyc12g019110.3 Solanum lycopersicum HOM05D001392 ORTHO05D006407 2.0e-14 82.8 170 35.9
Carub.0006s1493 Capsella rubella HOM05D001392 ORTHO05D006407 3.5e-14 82.0 170 36.5
FvH4_7g04130 Fragaria vesca HOM05D001392 ORTHO05D006407 3.5e-14 82.0 162 39.5
SalBow5G1075 Salvia bowleyana HOM05D001392 ORTHO05D006407 3.5e-14 82.0 167 35.3
Sopen12g009300 Solanum pennellii HOM05D001392 ORTHO05D006407 3.5e-14 82.0 170 35.9
Lalb_Chr14g0364821 Lupinus albus HOM05D001392 ORTHO05D006407 4.5e-14 81.6 170 35.9
ATR0697G119 Amborella trichopoda HOM05D001392 ORTHO05D006407 5.9e-14 81.3 169 36.7
AL6G27720 Arabidopsis lyrata HOM05D001392 ORTHO05D006407 5.9e-14 81.3 170 36.5
Migut.D01299 Erythranthe guttata HOM05D001392 ORTHO05D006407 7.7e-14 80.9 162 37.0
Gohir.A10G243050 Gossypium hirsutum HOM05D001392 ORTHO05D006407 1.0e-13 80.5 162 36.4
Aa31LG11G12960 Aethionema arabicum HOM05D001392 ORTHO05D006407 1.3e-13 80.1 173 34.7
MSTRG.4620 Avicennia marina HOM05D001392 ORTHO05D006407 1.3e-13 80.1 167 36.5
MBI11_g24566_MAGBIO Magnolia biondii HOM05D001392 ORTHO05D006407 1.3e-13 80.1 172 34.9
PGR004G0453 Punica granatum HOM05D001392 ORTHO05D006407 1.3e-13 80.1 170 34.7
GSVIVG01030775001 Vitis vinifera HOM05D001392 ORTHO05D006407 1.3e-13 80.1 170 35.9
Gorai.011G296000 Gossypium raimondii HOM05D001392 ORTHO05D006407 1.7e-13 79.7 152 37.5
Potri.017G124500 Populus trichocarpa HOM05D001392 ORTHO05D006407 1.7e-13 79.7 170 37.6
GSVIVG01027222001 Vitis vinifera HOM05D001392 ORTHO05D006407 1.7e-13 79.7 170 35.3
AT5G16715 Arabidopsis thaliana HOM05D001392 ORTHO05D006407 2.2e-13 79.3 170 35.3
Ciclev10010998m.g Citrus clementina HOM05D001392 ORTHO05D006407 2.2e-13 79.3 165 37.0
unitig_749.g13792 Utricularia gibba HOM05D001392 ORTHO05D006407 2.2e-13 79.3 172 39.0
arahy.Tifrunner.gnm1.ann1.0T11RW Arachis hypogaea HOM05D001392 ORTHO05D006407 3.8e-13 78.6 169 36.7
CARHR196470 Cardamine hirsuta HOM05D001392 ORTHO05D006407 3.8e-13 78.6 170 35.3
THA.LOC104827192 Tarenaya hassleriana HOM05D001392 ORTHO05D006407 3.8e-13 78.6 170 34.7
Duzib133G1570 Durio zibethinus HOM05D001392 ORTHO05D006407 5.0e-13 78.2 167 35.3
PSO339G4038 Papaver somniferum HOM05D001392 ORTHO05D006407 5.0e-13 78.2 167 34.7
PSO384G0294 Papaver somniferum HOM05D001392 ORTHO05D006407 5.0e-13 78.2 167 35.3
QL07p019084 Quercus lobata HOM05D001392 ORTHO05D006407 6.5e-13 77.8 164 36.0
BcaC04g18859 Brassica carinata HOM05D001392 ORTHO05D006407 8.5e-13 77.4 170 34.1
C09p60360 Brassica napus HOM05D001392 ORTHO05D006407 8.5e-13 77.4 170 34.1
BolC9t58869H Brassica oleracea HOM05D001392 ORTHO05D006407 8.5e-13 77.4 170 34.1
Cpa.g.sc116.46 Carica papaya HOM05D001392 ORTHO05D006407 8.5e-13 77.4 166 34.9
Gohir.A12G276975 Gossypium hirsutum HOM05D001392 ORTHO05D014312 8.5e-13 77.4 170 35.3
A10p22510 Brassica napus HOM05D001392 ORTHO05D006407 1.1e-12 77.0 170 34.1
Aqoxy2G00612 Aquilegia oxysepala HOM05D001392 ORTHO05D006407 1.5e-12 76.6 172 36.0
Thhalv10012577m.g Eutrema salsugineum HOM05D001392 ORTHO05D006407 1.5e-12 76.6 170 34.7
Gohir.D07G000800 Gossypium hirsutum HOM05D001392 ORTHO05D014312 1.5e-12 76.6 162 34.6
Sp6g27440 Schrenkiella parvula HOM05D001392 ORTHO05D006407 1.9e-12 76.3 170 34.1
Sed0009589 Sechium edule HOM05D001392 ORTHO05D006407 1.9e-12 76.3 173 31.8
CANSAT71G0007 Cannabis sativa HOM05D001392 ORTHO05D006407 2.5e-12 75.9 167 36.5
Manes.02G076200 Manihot esculenta HOM05D001392 ORTHO05D006407 3.2e-12 75.5 164 35.4
Zm00001eb117220 Zea mays HOM05D001392 ORTHO05D006407 3.2e-12 75.5 170 32.9
BraA10t44310Z Brassica rapa HOM05D001392 ORTHO05D006407 4.2e-12 75.1 170 33.5
Cfa017719 Carpinus fangiana HOM05D001392 ORTHO05D006407 7.2e-12 74.3 164 34.1
CAN.G207.6 Capsicum annuum HOM05D001392 ORTHO05D006407 9.4e-12 73.9 170 34.1
CsaV3_3G020830 Cucumis sativus L. HOM05D001392 ORTHO05D006407 1.2e-11 73.6 173 31.2
Glyma.17G186800 Glycine max HOM05D001392 ORTHO05D006407 1.6e-11 73.2 174 33.9
Nitab4.5_0003197g0040 Nicotiana tabacum HOM05D001392 ORTHO05D006407 1.6e-11 73.2 167 34.7
Os07g0163500 Oryza sativa ssp. japonica HOM05D001392 ORTHO05D006407 2.7e-11 72.4 170 32.4
Medtr6g027620 Medicago truncatula HOM05D001392 ORTHO05D006407 3.6e-11 72.0 166 32.5
Psat1g089800 Pisum sativum HOM05D001392 ORTHO05D006407 3.6e-11 72.0 170 32.9
CiPaw.09G167000 Carya illinoinensis HOM05D001392 ORTHO05D006407 6.1e-11 71.2 165 33.9
Phvul.004G073700 Phaseolus vulgaris HOM05D001392 ORTHO05D006407 6.1e-11 71.2 164 33.5
Ca_25679_v3 Cicer arietinum L. HOM05D001392 ORTHO05D006407 8.0e-11 70.9 170 31.8
Hund13115 Selenicereus undatus HOM05D001392 ORTHO05D006407 8.0e-11 70.9 170 34.7
TWI74G1301 Tripterygium wilfordii HOM05D001392 ORTHO05D006407 8.0e-11 70.9 170 34.1
VMungo0464G0907 Vigna mungo HOM05D001392 ORTHO05D006407 8.0e-11 70.9 165 33.9
CDE10G1341 Ceratophyllum demersum HOM05D001392 ORTHO05D006407 1.4e-10 70.1 167 32.9
Gohir.A08G253800 Gossypium hirsutum HOM05D001392 ORTHO05D006407 1.4e-10 70.1 161 36.6
Haze_20419 Corylus avellana HOM05D001392 ORTHO05D006407 3.0e-10 68.9 199 30.7
TPR.G35631 Trifolium pratense HOM05D001392 ORTHO05D006407 4.0e-10 68.6 170 32.4
Ah.12g060150 Amaranthus hybridus HOM05D001392 ORTHO05D006407 6.8e-10 67.8 172 30.8
Nn7g38289 Nelumbo nucifera HOM05D001392 ORTHO05D006407 6.8e-10 67.8 156 34.0
FAN03G0802 Fragaria x ananassa HOM05D001392 ORTHO05D006407 1.7e-08 63.2 183 30.6
Hma1.2p1_0524F.1_g172370 Hydrangea macrophylla HOM05D001392 ORTHO05D014312 1.7e-08 63.2 96 42.7
Hma1.2p1_1840F.1_g304940 Hydrangea macrophylla HOM05D001392 ORTHO05D014312 3.7e-08 62.0 93 44.1
EL10Ac2g03165 Beta vulgaris HOM05D001392 ORTHO05D006407 4.9e-08 61.6 170 31.8
MD05G1034800 Malus domestica HOM05D001392 ORTHO05D006407 4.9e-08 61.6 182 30.2
DCAR_003434 Daucus carota HOM05D001392 ORTHO05D006407 8.3e-08 60.8 160 30.0
Gorai.N015700 Gossypium raimondii HOM05D001392 ORTHO05D029905 8.3e-08 60.8 113 35.4
Eucgr.F02848 Eucalyptus grandis HOM05D001392 ORTHO05D006407 1.4e-07 60.1 171 31.0
FAN13G1017 Fragaria x ananassa HOM05D001392 ORTHO05D006407 1.4e-07 60.1 165 32.1
Gohir.D01G222000 Gossypium hirsutum HOM05D001392 ORTHO05D006407 3.1e-07 58.9 155 32.9
Gorai.002G268700 Gossypium raimondii HOM05D001392 ORTHO05D006407 3.1e-07 58.9 155 32.9
SGA_v2.0_scaffold40G15632 Striga asiatica HOM05D001392 ORTHO05D006407 3.1e-07 58.9 105 41.0
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 7.0e-07 57.8 98 41.8
Gorai.008G298900 Gossypium raimondii HOM05D001392 ORTHO05D014312 7.0e-07 57.8 98 41.8
Lj4A264G50 Lonicera japonica HOM05D001392 ORTHO05D006407 9.2e-07 57.4 59 47.5
arahy.Tifrunner.gnm1.ann1.XLS2Y4 Arachis hypogaea HOM05D001392 ORTHO05D006407 1.2e-06 57.0 101 36.6
Sc14g0006490 Simmondsia chinensis HOM05D001392 ORTHO05D006407 1.2e-06 57.0 59 49.2
MD09G1264400 Malus domestica HOM05D001392 ORTHO05D006407 1.6e-06 56.6 94 39.4
Rhsim08G0018500 Rhododendron simsii HOM05D001392 ORTHO05D006407 3.5e-06 55.5 61 49.2
MD17G1258800 Malus domestica HOM05D001392 ORTHO05D014312 5.9e-06 54.7 113 39.8


User provided reference genes

Program Settings