Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 1.2e-214 749.6 397 100.0
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 5.4e-186 654.4 390 91.0
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 1.0e-184 650.2 394 89.8
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 1.8e-165 586.3 341 92.1
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 2.6e-156 555.8 336 84.2
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 4.5e-156 555.1 334 82.3
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 4.5e-156 555.1 374 76.5
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 7.6e-156 554.3 340 81.5
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 2.9e-155 552.4 398 73.4
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 2.9e-155 552.4 397 74.1
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 8.4e-155 550.8 381 74.5
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 1.1e-154 550.4 336 81.5
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 1.4e-154 550.1 338 80.5
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 2.5e-154 549.3 376 75.8
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 2.5e-154 549.3 372 75.5
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 3.2e-154 548.9 379 79.4
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 3.2e-154 548.9 332 81.9
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 7.1e-154 547.7 355 78.6
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 9.3e-154 547.4 382 74.3
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 9.3e-154 547.4 371 76.0
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.2e-153 547.0 334 81.1
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 1.2e-153 547.0 411 72.5
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 1.6e-153 546.6 366 75.4
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 2.1e-153 546.2 347 78.4
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 2.7e-153 545.8 344 78.5
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 3.5e-153 545.4 339 81.1
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 4.6e-153 545.0 382 74.3
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 4.6e-153 545.0 382 74.3
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 6.0e-153 544.7 335 82.1
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 7.9e-153 544.3 382 78.8
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 1.0e-152 543.9 387 71.8
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 1.0e-152 543.9 366 75.1
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.0e-152 543.9 365 81.4
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 1.0e-152 543.9 342 79.2
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 1.0e-152 543.9 368 76.1
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 1.8e-152 543.1 374 74.6
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 2.3e-152 542.7 332 80.1
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 2.3e-152 542.7 354 81.9
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 2.3e-152 542.7 339 79.4
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 3.0e-152 542.3 333 79.9
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 3.0e-152 542.3 341 78.9
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 3.9e-152 542.0 340 79.1
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 5.1e-152 541.6 339 80.2
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 6.7e-152 541.2 373 74.8
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 6.7e-152 541.2 373 74.8
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 1.5e-151 540.0 335 80.6
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 3.3e-151 538.9 348 83.3
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 4.3e-151 538.5 340 84.1
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 4.3e-151 538.5 376 73.7
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 7.4e-151 537.7 365 79.2
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 9.7e-151 537.3 393 78.4
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 1.3e-150 537.0 378 74.9
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 1.3e-150 537.0 389 72.8
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 2.2e-150 536.2 387 76.0
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 2.8e-150 535.8 360 81.4
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 3.7e-150 535.4 373 78.6
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 4.8e-150 535.0 361 74.5
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 4.8e-150 535.0 337 82.5
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 4.8e-150 535.0 339 83.8
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 4.8e-150 535.0 383 78.3
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 6.3e-150 534.6 416 68.8
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 6.3e-150 534.6 361 76.2
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 1.1e-149 533.9 368 73.9
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 1.1e-149 533.9 323 81.7
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 1.8e-149 533.1 334 79.0
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 1.8e-149 533.1 352 81.8
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 2.4e-149 532.7 390 76.7
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 3.1e-149 532.3 333 79.0
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 4.1e-149 531.9 378 74.1
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 5.3e-149 531.6 376 72.9
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 5.3e-149 531.6 376 72.1
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 1.5e-148 530.0 376 72.6
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.4e-148 528.9 331 82.8
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 3.4e-148 528.9 384 72.9
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 3.4e-148 528.9 389 75.6
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 4.5e-148 528.5 364 74.5
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 5.9e-148 528.1 337 81.9
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 5.9e-148 528.1 376 72.6
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 5.9e-148 528.1 376 72.6
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 7.7e-148 527.7 335 77.9
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 1.0e-147 527.3 378 71.7
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 2.2e-147 526.2 335 83.3
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 3.8e-147 525.4 333 78.7
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 3.8e-147 525.4 336 82.7
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 8.5e-147 524.2 380 75.8
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 1.9e-146 523.1 335 82.7
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 7.2e-146 521.2 332 78.6
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 9.4e-146 520.8 365 77.8
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 9.4e-146 520.8 337 76.0
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.2e-145 520.4 302 87.7
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.2e-145 520.4 302 87.7
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 1.8e-144 516.5 380 75.3
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 6.7e-144 514.6 405 68.1
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 2.0e-143 513.1 350 74.0
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 7.4e-143 511.1 375 71.2
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 3.7e-142 508.8 338 76.0
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 9.1e-141 504.2 376 69.1
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 1.2e-140 503.8 337 76.3
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 1.0e-139 500.7 437 61.6
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 6.5e-139 498.0 424 67.5
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 2.0e-135 486.5 331 72.2
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 4.4e-135 485.3 336 76.2
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 2.6e-132 476.1 336 75.3
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 5.9e-132 474.9 524 56.1
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 3.8e-131 472.2 487 59.3
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.5e-127 460.3 554 52.9
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 3.5e-124 449.1 350 64.9
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.9e-123 446.0 337 73.9
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 3.1e-117 426.0 354 65.3
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 1.2e-113 414.1 334 68.9
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 9.2e-101 371.3 209 86.1
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.7e-100 369.8 366 61.2
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 1.2e-97 360.9 342 58.2
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 8.9e-96 354.8 180 93.9
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 1.9e-93 347.1 339 58.7
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 1.1e-77 294.7 292 56.8
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 2.1e-57 227.3 114 93.0
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 4.5e-55 219.5 321 44.2
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 6.2e-49 199.1 180 61.1
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 1.8e-43 181.0 122 72.1
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 1.8e-32 144.4 69 95.7
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 3.2e-29 133.7 88 72.7
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.2e-28 131.7 75 86.7
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 1.4e-27 128.3 105 64.8
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 2.3e-27 127.5 188 45.2
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.1e-26 125.2 83 73.5
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 2.1e-20 104.4 53 86.8
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 5.7e-18 96.3 98 54.1
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 2.4e-16 90.9 43 95.3
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 1.8e-11 74.7 64 62.5
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 8.8e-11 72.4 43 79.1
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 1.1e-10 72.0 70 60.0
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 1.7e-09 68.2 38 76.3
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 3.7e-09 67.0 39 82.1


User provided reference genes

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