Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0129541 Helianthus annuus HOM05D006172 ORTHO05D005515 0.0e+00 1772.7 1001 100.0
HanXRQChr05g0129551 Helianthus annuus HOM05D006172 ORTHO05D005515 0.0e+00 1772.7 1001 100.0
Lsat_1_v5_gn_7_15980 Lactuca sativa HOM05D006172 ORTHO05D005515 0.0e+00 1422.1 1014 81.8
ECA236G0092 Erigeron canadensis HOM05D006172 ORTHO05D005515 0.0e+00 1351.3 1000 79.3
Rhsim13G0154200 Rhododendron simsii HOM05D006172 ORTHO05D005515 0.0e+00 1089.3 1102 61.5
CSS0050420 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 6.2e-311 1070.8 1065 62.3
CSS0038964 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 1.0e-310 1070.1 1059 62.7
Nitab4.5_0006322g0020 Nicotiana tabacum HOM05D006172 ORTHO05D005515 3.5e-306 1055.0 1069 57.3
Solyc05g055610.4 Solanum lycopersicum HOM05D006172 ORTHO05D005515 3.5e-306 1055.0 1013 63.8
Sopen05g034060 Solanum pennellii HOM05D006172 ORTHO05D005515 2.3e-305 1052.4 1052 62.4
TAR626G1786 Trochodendron aralioides HOM05D006172 ORTHO05D005515 4.1e-299 1031.6 1069 59.1
CANSAT56G2229 Cannabis sativa HOM05D006172 ORTHO05D005515 7.0e-299 1030.8 1054 61.1
GSVIVG01012726001 Vitis vinifera HOM05D006172 ORTHO05D005515 2.0e-298 1029.2 1021 63.3
CAN.G694.35 Capsicum annuum HOM05D006172 ORTHO05D005515 3.5e-298 1028.5 1061 60.4
Peaxi162Scf00627g00035 Petunia axillaris HOM05D006172 ORTHO05D005515 1.7e-297 1026.2 1012 61.5
Lj1A1230T62 Lonicera japonica HOM05D006172 ORTHO05D005515 3.8e-297 1025.0 1083 60.9
Aqoxy1G02151 Aquilegia oxysepala HOM05D006172 ORTHO05D005515 3.3e-296 1021.9 1067 57.4
PSO675G8381 Papaver somniferum HOM05D006172 ORTHO05D005515 3.3e-296 1021.9 1061 59.1
Lj4g0023330 Lotus japonicus HOM05D006172 ORTHO05D005515 4.7e-295 1018.1 1052 61.6
SGA_v2.0_scaffold4G01916 Striga asiatica HOM05D006172 ORTHO05D005515 6.1e-295 1017.7 1052 59.5
Hund21409 Selenicereus undatus HOM05D006172 ORTHO05D005515 8.0e-295 1017.3 1042 57.8
Gorai.009G178500 Gossypium raimondii HOM05D006172 ORTHO05D005515 1.8e-294 1016.1 1048 58.3
Migut.M01317 Erythranthe guttata HOM05D006172 ORTHO05D005515 6.8e-294 1014.2 1052 55.2
Aa31LG9G9740 Aethionema arabicum HOM05D006172 ORTHO05D005515 2.6e-293 1012.3 1022 60.7
Oeu013636.1 Olea europaea HOM05D006172 ORTHO05D005515 2.6e-293 1012.3 1031 61.5
Medtr4g132120 Medicago truncatula HOM05D006172 ORTHO05D005515 5.8e-293 1011.1 1059 60.4
Cc09_g01690 Coffea canephora HOM05D006172 ORTHO05D005515 1.3e-292 1010.0 1063 60.9
Gohir.D05G173300 Gossypium hirsutum HOM05D006172 ORTHO05D005515 4.9e-292 1008.1 1048 55.0
PGR042G0524 Punica granatum HOM05D006172 ORTHO05D005515 8.3e-292 1007.3 1031 61.7
Nn1g07129 Nelumbo nucifera HOM05D006172 ORTHO05D005515 1.1e-291 1006.9 1071 60.3
vmacro03686 Vaccinium macrocarpon HOM05D006172 ORTHO05D005515 1.9e-291 1006.1 1059 62.4
DCAR_028182 Daucus carota HOM05D006172 ORTHO05D005515 2.4e-291 1005.7 1051 59.9
Glyma.07G260400 Glycine max HOM05D006172 ORTHO05D005515 2.4e-291 1005.7 1053 59.4
Carub.0006s3250 Capsella rubella HOM05D006172 ORTHO05D005515 3.2e-291 1005.4 1015 58.7
MD10G1321300 Malus domestica HOM05D006172 ORTHO05D005515 3.2e-291 1005.4 1049 60.3
Lalb_Chr13g0304211 Lupinus albus HOM05D006172 ORTHO05D005515 2.0e-290 1002.7 1054 59.3
COL.COLO4_31773 Corchorus olitorius HOM05D006172 ORTHO05D005515 2.7e-290 1002.3 1055 60.4
AL6G48130 Arabidopsis lyrata HOM05D006172 ORTHO05D005515 7.8e-290 1000.7 1013 58.3
FvH4_3g02080 Fragaria vesca HOM05D006172 ORTHO05D005515 2.3e-289 999.2 1051 56.4
AT4G04670 Arabidopsis thaliana HOM05D006172 ORTHO05D005515 3.9e-289 998.4 1015 57.8
Duzib192G0085 Durio zibethinus HOM05D006172 ORTHO05D005515 1.1e-288 996.9 1050 60.5
Thhalv10028391m.g Eutrema salsugineum HOM05D006172 ORTHO05D005515 1.5e-288 996.5 1015 60.9
FAN21G3941 Fragaria x ananassa HOM05D006172 ORTHO05D005515 1.5e-288 996.5 1041 56.7
RcHm_v2.0_Chr5g0003171 Rosa chinensis HOM05D006172 ORTHO05D005515 2.5e-288 995.7 1048 56.4
Atru.chr10.2219 Acer truncatum HOM05D006172 ORTHO05D005515 5.6e-288 994.6 1054 58.0
QL05p073195 Quercus lobata HOM05D006172 ORTHO05D005515 5.6e-288 994.6 1051 59.4
Gohir.A05G170200 Gossypium hirsutum HOM05D006172 ORTHO05D005515 7.3e-288 994.2 1074 56.6
Sabra04G0007400 Salix brachista HOM05D006172 ORTHO05D005515 1.8e-286 989.6 1063 53.0
Sp6g04230 Schrenkiella parvula HOM05D006172 ORTHO05D005515 4.0e-286 988.4 1016 60.8
arahy.Tifrunner.gnm1.ann1.GS5NL2 Arachis hypogaea HOM05D006172 ORTHO05D005515 6.8e-286 987.6 1058 59.8
VMungo1215G3219 Vigna mungo HOM05D006172 ORTHO05D005515 1.2e-285 986.9 1047 60.4
A03p30170 Brassica napus HOM05D006172 ORTHO05D005515 1.7e-284 983.0 1007 59.9
BraA03t12201Z Brassica rapa HOM05D006172 ORTHO05D005515 2.9e-284 982.2 1014 59.9
Potri.004G015200 Populus trichocarpa HOM05D006172 ORTHO05D005515 8.3e-284 980.7 1041 55.1
Ca_21083_v3 Cicer arietinum L. HOM05D006172 ORTHO05D005515 7.0e-283 977.6 1056 59.4
THA.LOC104813121 Tarenaya hassleriana HOM05D006172 ORTHO05D005515 9.2e-283 977.2 1032 59.6
FAN25G0496 Fragaria x ananassa HOM05D006172 ORTHO05D005515 6.0e-282 974.5 1046 55.7
BolC3t15953H Brassica oleracea HOM05D006172 ORTHO05D005515 1.3e-281 973.4 1019 60.1
arahy.Tifrunner.gnm1.ann1.3R4FRS Arachis hypogaea HOM05D006172 ORTHO05D005515 2.1e-279 966.1 1059 59.1
TWI38G1682 Tripterygium wilfordii HOM05D006172 ORTHO05D005515 8.1e-279 964.1 1035 58.7
Ah.09g234910 Amaranthus hybridus HOM05D006172 ORTHO05D005515 1.4e-275 953.4 1049 57.6
Eucgr.E04055 Eucalyptus grandis HOM05D006172 ORTHO05D005515 1.9e-275 953.0 1070 57.2
AUR62021945 Chenopodium quinoa HOM05D006172 ORTHO05D005515 9.2e-275 950.7 1047 59.1
C03p36400 Brassica napus HOM05D006172 ORTHO05D005515 3.0e-273 945.7 1009 59.6
EL10Ac8g20057 Beta vulgaris HOM05D006172 ORTHO05D005515 8.6e-273 944.1 1048 59.3
ClCG01G022000 Citrullus lanatus HOM05D006172 ORTHO05D005515 1.5e-272 943.3 1073 56.8
Sed0002789 Sechium edule HOM05D006172 ORTHO05D005515 9.5e-272 940.6 1051 57.6
BcaB01g02576 Brassica carinata HOM05D006172 ORTHO05D005515 1.6e-271 939.9 1003 60.2
AUR62012709 Chenopodium quinoa HOM05D006172 ORTHO05D005515 1.9e-267 926.4 1039 58.4
Sc05g0009930 Simmondsia chinensis HOM05D006172 ORTHO05D005515 5.6e-264 914.8 1029 57.0
Sc05g0009220 Simmondsia chinensis HOM05D006172 ORTHO05D005515 5.3e-262 908.3 1027 56.8
Cpa.g.sc152.15 Carica papaya HOM05D006172 ORTHO05D005515 1.5e-261 906.7 1006 57.9
Haze_06799 Corylus avellana HOM05D006172 ORTHO05D005515 2.9e-260 902.5 979 57.7
MELO3C007389.2 Cucumis melo HOM05D006172 ORTHO05D005515 1.1e-259 900.6 1015 55.9
ATR0794G123 Amborella trichopoda HOM05D006172 ORTHO05D005515 1.5e-256 890.2 1117 52.4
Psat4g006680 Pisum sativum HOM05D006172 ORTHO05D005515 1.4e-251 873.6 995 59.5
Nitab4.5_0000096g0040 Nicotiana tabacum HOM05D006172 ORTHO05D005515 1.6e-250 870.2 993 57.1
Ciclev10018338m.g Citrus clementina HOM05D006172 ORTHO05D005515 2.3e-249 866.3 1055 53.8
Dinv13892 Davidia involucrata HOM05D006172 ORTHO05D005515 2.1e-226 790.0 781 63.9
SEGI_01208 Sequoiadendron giganteum HOM05D006172 ORTHO05D005515 2.2e-220 770.0 1189 46.3
PSO541G4594 Papaver somniferum HOM05D006172 ORTHO05D005515 5.0e-220 768.8 833 57.0
PGSC0003DMG400023367 Solanum tuberosum HOM05D006172 ORTHO05D005515 2.5e-219 766.5 749 65.2
CiPaw.09G091900 Carya illinoinensis HOM05D006172 ORTHO05D005515 1.3e-215 754.2 782 61.9
Thecc.06G220200 Theobroma cacao HOM05D006172 ORTHO05D005515 8.2e-215 751.5 776 62.2
CARHR252870 Cardamine hirsuta HOM05D006172 ORTHO05D005515 3.5e-213 746.1 746 61.0
Manes.16G007200 Manihot esculenta HOM05D006172 ORTHO05D005515 7.7e-213 745.0 769 60.7
Prupe.4G021000 Prunus persica HOM05D006172 ORTHO05D005515 8.0e-210 734.9 771 60.4
Phvul.003G078700 Phaseolus vulgaris HOM05D006172 ORTHO05D005515 7.2e-203 711.8 745 61.9
Zm00001eb322630 Zea mays HOM05D006172 ORTHO05D005515 1.5e-192 677.6 925 50.2
Pp3c9_15020 Physcomitrium patens HOM05D006172 ORTHO05D005515 3.5e-189 666.4 1140 44.7
CsaV3_6G049060 Cucumis sativus L. HOM05D006172 ORTHO05D005515 1.0e-188 664.8 730 58.4
Mapoly0137s0034 Marchantia polymorpha HOM05D006172 ORTHO05D005515 1.9e-187 660.6 1085 46.5
HPP92_012401 Vanilla planifolia HOM05D006172 ORTHO05D005515 8.3e-175 618.6 768 53.3
SHI02198 Sapria himalayana HOM05D006172 ORTHO05D005515 1.6e-173 614.4 956 43.9
CDE11G0909 Ceratophyllum demersum HOM05D006172 ORTHO05D005515 1.6e-165 587.8 504 58.1
unitig_37.g12153 Utricularia gibba HOM05D006172 ORTHO05D005515 1.2e-157 561.6 731 54.7
MBI02_g46431_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 1.5e-155 554.7 747 51.7
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 1.2e-120 438.7 427 55.3
AagrBONN_evm.TU.Sc2ySwM_362.1356 Anthoceros agrestis HOM05D006172 ORTHO05D005515 2.5e-118 431.0 724 45.6
CAN.G694.33 Capsicum annuum HOM05D006172 ORTHO05D005515 9.1e-89 332.8 344 55.2
SMO172G0113 Selaginella moellendorffii HOM05D006172 ORTHO05D005515 4.2e-86 323.9 229 62.9
CBR_g48263 Chara braunii HOM05D006172 ORTHO05D005515 1.6e-85 322.0 432 43.3
MCO05G475 Micromonas commoda HOM05D006172 ORTHO05D005515 6.8e-84 316.6 410 45.4
Oeu014516.1 Olea europaea HOM05D006172 ORTHO05D005515 3.1e-81 307.8 178 78.1
MBI02_g21855_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 1.9e-78 298.5 205 68.3
Actinidia28669 Actinidia chinensis HOM05D006172 ORTHO05D005515 6.3e-74 283.5 266 60.9
Cre14.g626634 Chlamydomonas reinhardtii HOM05D006172 ORTHO05D005515 1.3e-71 275.8 1555 24.9
SMO139G0125 Selaginella moellendorffii HOM05D006172 ORTHO05D005515 6.8e-68 263.5 460 36.1
CARHR252880 Cardamine hirsuta HOM05D006172 ORTHO05D005515 7.0e-65 253.4 231 60.2
PRCOL_00000475 Prasinoderma coloniale HOM05D006172 ORTHO05D005515 8.6e-63 246.5 279 46.2
MBI02_g21856_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 5.6e-62 243.8 588 42.0
Atru.chr10.2224 Acer truncatum HOM05D006172 ORTHO05D005515 7.3e-62 243.4 217 59.4
CDE11G0148 Ceratophyllum demersum HOM05D006172 ORTHO05D005515 1.3e-58 232.6 375 41.6
SHI02199 Sapria himalayana HOM05D006172 ORTHO05D005515 4.1e-57 227.6 218 55.5
TPR.G20315 Trifolium pratense HOM05D006172 ORTHO05D005515 2.9e-42 178.3 102 79.4
AagrBONN_evm.TU.Sc2ySwM_362.1355 Anthoceros agrestis HOM05D006172 ORTHO05D005515 3.8e-42 177.9 204 47.5
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 2.4e-41 175.3 161 55.3
HPP92_012400 Vanilla planifolia HOM05D006172 ORTHO05D005515 1.6e-37 162.5 211 47.9
TPR.G37083 Trifolium pratense HOM05D006172 ORTHO05D005515 4.0e-36 157.9 95 74.7
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 3.4e-35 154.8 210 42.9
HPP92_012316 Vanilla planifolia HOM05D006172 ORTHO05D005515 2.8e-29 135.2 106 68.9
unitig_37.g12155 Utricularia gibba HOM05D006172 ORTHO05D005515 1.2e-24 119.8 121 50.4
unitig_37.g12154 Utricularia gibba HOM05D006172 ORTHO05D005515 1.1e-20 106.7 77 71.4
Cfa027274 Carpinus fangiana HOM05D006172 ORTHO05D005515 6.0e-16 90.9 276 29.0
Peaxi162Scf00627g00310 Petunia axillaris HOM05D006172 ORTHO05D005515 5.1e-15 87.8 59 62.7
Os07g0515000 Oryza sativa ssp. japonica HOM05D006172 ORTHO05D005515 1.1e-09 70.1 41 68.3
Os08g0230300 Oryza sativa ssp. japonica HOM05D006700 ORTHO05D008196 2.1e-08 65.9 136 33.8
Carub.0001s4040 Capsella rubella HOM05D006700 ORTHO05D008196 7.9e-08 63.9 136 33.1
Peaxi162Scf00207g01622 Petunia axillaris HOM05D006700 ORTHO05D008196 1.0e-07 63.5 136 30.9
Aa31LG4G4440 Aethionema arabicum HOM05D003320 ORTHO05D003941 1.3e-07 63.2 139 29.5
Zm00001eb414270 Zea mays HOM05D006700 ORTHO05D008196 5.1e-07 61.2 136 31.6
Peaxi162Scf00560g00619 Petunia axillaris HOM05D002586 ORTHO05D007521 6.7e-07 60.8 382 24.3
HPP92_025130 Vanilla planifolia HOM05D004809 ORTHO05D006732 8.7e-07 60.5 148 30.4
Dinv20345 Davidia involucrata HOM05D003731 ORTHO05D008196 1.1e-06 60.1 135 29.6
Rhsim08G0144000 Rhododendron simsii HOM05D003320 ORTHO05D003941 1.1e-06 60.1 151 28.5
Cfa025498 Carpinus fangiana HOM05D006172 ORTHO05D005515 1.5e-06 59.7 98 35.7
CAN.G308.13 Capsicum annuum HOM05D006700 ORTHO05D008196 1.9e-06 59.3 136 30.1
Nitab4.5_0002354g0030 Nicotiana tabacum HOM05D006700 ORTHO05D008196 1.9e-06 59.3 135 28.9
EL10Ac4g08040 Beta vulgaris HOM05D002586 ORTHO05D007009 2.5e-06 58.9 114 32.5
HanXRQChr11g0331971 Helianthus annuus HOM05D002586 ORTHO05D007009 2.5e-06 58.9 190 26.8
PGSC0003DMG400026513 Solanum tuberosum HOM05D006700 ORTHO05D008196 2.5e-06 58.9 135 28.1
Aqoxy7G02833 Aquilegia oxysepala HOM05D006700 ORTHO05D008196 3.3e-06 58.5 135 28.9
arahy.Tifrunner.gnm1.ann1.0A10RK Arachis hypogaea HOM05D006700 ORTHO05D008196 3.3e-06 58.5 135 30.4
arahy.Tifrunner.gnm1.ann1.J9SV8Q Arachis hypogaea HOM05D006700 ORTHO05D008196 3.3e-06 58.5 135 30.4
arahy.Tifrunner.gnm1.ann1.Q13VIF Arachis hypogaea HOM05D006700 ORTHO05D008196 3.3e-06 58.5 135 30.4
COL.COLO4_20964 Corchorus olitorius HOM05D004809 ORTHO05D006732 3.3e-06 58.5 109 34.9
Os03g0835800 Oryza sativa ssp. japonica HOM05D004809 ORTHO05D006732 3.3e-06 58.5 110 33.6
AL1G59440 Arabidopsis lyrata HOM05D006700 ORTHO05D008196 4.3e-06 58.2 136 30.9
Phvul.008G254100 Phaseolus vulgaris HOM05D006700 ORTHO05D008196 4.3e-06 58.2 136 30.1
Sopen06g022760 Solanum pennellii HOM05D006700 ORTHO05D008196 4.3e-06 58.2 136 29.4
unitig_748.g8031 Utricularia gibba HOM05D006700 ORTHO05D008196 5.7e-06 57.8 136 30.1
Zm00001eb063700 Zea mays HOM05D004809 ORTHO05D006732 5.7e-06 57.8 110 31.8
Lsat_1_v5_gn_0_7340 Lactuca sativa HOM05D004809 ORTHO05D006732 7.4e-06 57.4 109 34.9
Sp1g38200 Schrenkiella parvula HOM05D006700 ORTHO05D008196 7.4e-06 57.4 136 30.9
Solyc06g063300.4 Solanum lycopersicum HOM05D006700 ORTHO05D008196 7.4e-06 57.4 136 30.9
VMungo0647G0463 Vigna mungo HOM05D006700 ORTHO05D008196 7.4e-06 57.4 136 29.4
CARHR041700 Cardamine hirsuta HOM05D006700 ORTHO05D008196 9.6e-06 57.0 137 30.7
Cc02_g09980 Coffea canephora HOM05D004809 ORTHO05D006732 9.6e-06 57.0 109 33.0
Manes.16G046700 Manihot esculenta HOM05D006700 ORTHO05D008196 9.6e-06 57.0 136 28.7


User provided reference genes

Program Settings