Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 2.6e-234 815.1 424 100.0
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 1.2e-226 789.6 424 96.7
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 2.8e-225 785.0 424 95.8
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 9.8e-218 760.0 422 94.1
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 2.5e-213 745.3 422 90.3
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 3.6e-212 741.5 419 90.9
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 1.8e-211 739.2 421 90.5
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 3.4e-210 734.9 419 89.7
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 5.7e-210 734.2 421 89.1
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 9.8e-210 733.4 419 89.7
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 2.9e-209 731.9 419 89.5
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 4.9e-209 731.1 422 89.3
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 6.4e-209 730.7 419 89.5
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 1.8e-208 729.2 421 88.4
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 2.4e-208 728.8 421 88.8
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 2.4e-208 728.8 422 87.9
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 3.2e-208 728.4 422 88.6
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 4.1e-208 728.0 419 88.5
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 4.1e-208 728.0 418 88.5
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 7.0e-208 727.2 419 89.3
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 9.2e-208 726.9 422 88.2
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 1.6e-207 726.1 421 88.1
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 3.5e-207 724.9 421 87.9
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 4.6e-207 724.5 421 88.4
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 4.6e-207 724.5 421 89.1
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 7.8e-207 723.8 421 89.1
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 7.8e-207 723.8 419 88.5
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 1.3e-206 723.0 419 88.1
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.3e-206 723.0 421 88.1
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 1.7e-206 722.6 420 88.3
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 1.7e-206 722.6 420 87.6
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 1.7e-206 722.6 420 87.9
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.3e-206 722.2 418 87.8
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 5.0e-206 721.1 419 88.1
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 5.0e-206 721.1 422 89.1
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 5.0e-206 721.1 418 87.6
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 5.0e-206 721.1 419 87.8
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 6.6e-206 720.7 419 88.3
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 6.6e-206 720.7 418 88.0
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 6.6e-206 720.7 419 87.6
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 6.6e-206 720.7 421 86.9
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 6.6e-206 720.7 422 87.4
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 6.6e-206 720.7 421 87.4
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 8.6e-206 720.3 422 87.9
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 1.1e-205 719.9 421 87.9
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 1.1e-205 719.9 422 87.4
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 1.1e-205 719.9 421 88.1
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.5e-205 719.5 420 86.7
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 1.9e-205 719.2 419 87.4
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 1.9e-205 719.2 421 86.7
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.9e-205 719.2 418 88.0
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 2.5e-205 718.8 422 88.9
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.5e-205 718.8 421 86.9
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 3.3e-205 718.4 420 87.4
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 3.3e-205 718.4 420 87.4
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 4.3e-205 718.0 422 86.7
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 5.6e-205 717.6 419 87.4
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 5.6e-205 717.6 427 86.7
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 7.3e-205 717.2 419 87.6
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 9.5e-205 716.8 420 86.0
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 1.2e-204 716.5 422 86.7
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 1.2e-204 716.5 419 87.6
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.6e-204 716.1 438 86.1
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 2.1e-204 715.7 422 86.7
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 2.8e-204 715.3 420 87.9
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 3.6e-204 714.9 419 86.9
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 3.6e-204 714.9 421 86.9
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 4.7e-204 714.5 419 87.6
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.7e-204 714.5 418 87.1
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 4.7e-204 714.5 421 86.7
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 6.2e-204 714.1 419 86.9
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 6.2e-204 714.1 421 87.4
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 8.0e-204 713.8 419 87.1
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 8.0e-204 713.8 419 86.9
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 8.0e-204 713.8 421 87.4
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.1e-203 713.4 418 87.3
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 1.1e-203 713.4 419 86.4
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 1.4e-203 713.0 421 86.5
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.8e-203 712.6 422 86.3
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 1.8e-203 712.6 422 87.7
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 3.1e-203 711.8 419 86.9
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 6.8e-203 710.7 419 86.6
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 6.8e-203 710.7 437 84.7
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 6.8e-203 710.7 419 86.9
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 8.9e-203 710.3 417 86.8
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 8.9e-203 710.3 421 86.0
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 1.2e-202 709.9 419 86.6
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 1.2e-202 709.9 423 86.5
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 1.5e-202 709.5 419 86.6
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 1.5e-202 709.5 421 86.0
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.5e-202 709.5 435 83.7
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 2.0e-202 709.1 419 86.6
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 2.0e-202 709.1 419 86.6
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 2.0e-202 709.1 419 86.6
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 4.4e-202 708.0 419 86.6
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 4.4e-202 708.0 421 86.0
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 1.3e-201 706.4 419 86.2
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 1.3e-201 706.4 419 86.2
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 1.3e-201 706.4 419 86.6
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 1.7e-201 706.1 419 86.2
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.7e-201 706.1 419 86.6
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 3.7e-201 704.9 473 79.3
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 3.7e-201 704.9 473 79.3
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 8.3e-201 703.7 422 86.7
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 8.3e-201 703.7 429 84.6
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.1e-200 703.4 420 85.5
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.4e-200 703.0 421 85.0
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 1.4e-200 703.0 430 84.2
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 1.4e-200 703.0 420 85.7
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.9e-200 702.6 422 85.8
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.4e-200 702.2 451 82.9
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 9.2e-200 700.3 422 85.8
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 6.0e-199 697.6 422 84.1
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 6.0e-199 697.6 452 81.0
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 2.3e-198 695.7 424 84.7
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 6.6e-198 694.1 422 83.4
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 2.4e-192 675.6 424 81.6
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 2.3e-190 669.1 375 90.7
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 3.0e-190 668.7 387 88.6
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.5e-189 665.6 419 82.8
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 4.3e-189 664.8 470 76.2
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 4.7e-188 661.4 504 71.2
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.4e-187 659.8 416 83.7
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 4.0e-187 658.3 409 83.1
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 5.2e-187 657.9 420 82.1
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 1.1e-184 650.2 388 85.8
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 3.5e-183 645.2 363 90.9
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 1.2e-180 636.7 378 84.9
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 1.4e-179 633.3 372 86.3
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 5.4e-176 621.3 436 73.6
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 1.1e-173 613.6 404 77.5
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.1e-171 607.1 417 74.6
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 8.4e-169 597.4 419 75.4
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.2e-167 593.6 408 77.5
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 3.5e-167 592.0 401 73.3
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 2.8e-164 582.4 334 88.3
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 2.4e-160 569.3 309 94.2
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 6.7e-150 534.6 417 66.4
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 6.3e-148 528.1 395 67.3
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 6.5e-145 518.1 282 95.4
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 7.9e-143 511.1 397 66.5
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 2.4e-139 499.6 458 64.0
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.4e-134 483.8 284 85.2
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 2.7e-127 459.5 394 67.0
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 2.8e-124 449.5 260 87.7
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.0e-118 429.5 242 90.9
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 1.9e-104 383.6 225 85.8
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 2.5e-104 383.3 236 80.5
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 5.4e-99 365.5 244 77.0
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 1.3e-97 360.9 205 89.3
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 2.4e-83 313.5 288 61.8
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 1.6e-74 284.3 288 53.1
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 1.1e-70 271.6 207 68.6
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 1.5e-64 251.1 147 84.4
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 5.4e-59 232.6 188 61.7
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 1.1e-51 208.4 197 64.0
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 1.6e-50 204.5 134 75.4
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 5.3e-46 189.5 113 90.3
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 2.9e-44 183.7 119 75.6
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 3.1e-38 163.7 287 36.6
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 3.4e-37 160.2 150 62.7
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 5.8e-37 159.5 157 61.1
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 7.6e-37 159.1 157 60.5
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 2.5e-35 154.1 109 74.3
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 2.0e-29 134.4 191 40.3
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 2.5e-27 127.5 82 76.8
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 2.7e-26 124.0 149 52.3
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 5.0e-20 103.2 69 75.4
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 1.6e-18 98.2 101 57.4
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 8.2e-15 85.9 50 88.0
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 4.1e-14 83.6 49 91.8
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 3.2e-11 73.9 40 95.0
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 3.9e-09 67.0 37 83.8
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 3.9e-09 67.0 65 52.3
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.1e-06 58.9 113 32.7
HanXRQChr15g0475161 Helianthus annuus HOM05D004007 ORTHO05D222506 1.4e-06 58.5 34 82.4
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 2.4e-06 57.8 111 32.4
MELO3C010675.2 Cucumis melo HOM05D002061 ORTHO05D002849 2.4e-06 57.8 413 23.2
CsaV3_2G024770 Cucumis sativus L. HOM05D002061 ORTHO05D002849 2.4e-06 57.8 413 23.2
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 3.1e-06 57.4 415 23.6
Lalb_Chr21g0314031 Lupinus albus HOM05D004007 ORTHO05D239120 4.1e-06 57.0 34 73.5
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 7.0e-06 56.2 415 23.1
Gohir.D04G179200 Gossypium hirsutum HOM05D002061 ORTHO05D002849 9.1e-06 55.8 413 24.5


User provided reference genes

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