Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0104441 Helianthus annuus HOM05D002708 ORTHO05D018503 4.2e-46 187.6 89 100.0
HanXRQChr03g0088081 Helianthus annuus HOM05D002708 ORTHO05D003516 1.0e-28 129.8 69 84.1
ECA248G0935 Erigeron canadensis HOM05D002708 ORTHO05D003516 2.6e-27 125.2 69 82.6
Lsat_1_v5_gn_1_83221 Lactuca sativa HOM05D002708 ORTHO05D003516 2.6e-27 125.2 69 82.6
HanXRQChr11g0341881 Helianthus annuus HOM05D002708 ORTHO05D003516 5.7e-27 124.0 69 81.2
HanXRQChr11g0352181 Helianthus annuus HOM05D002708 ORTHO05D003516 1.7e-26 122.5 69 79.7
Peaxi162Scf01124g00013 Petunia axillaris HOM05D002708 ORTHO05D003516 2.2e-26 122.1 69 81.2
ECA248G3827 Erigeron canadensis HOM05D002708 ORTHO05D003516 2.8e-26 121.7 69 79.7
Dinv43572 Davidia involucrata HOM05D002708 ORTHO05D003516 3.7e-26 121.3 69 79.7
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 3.7e-26 121.3 69 78.3
CAN.G1480.4 Capsicum annuum HOM05D002708 ORTHO05D003516 4.8e-26 120.9 69 79.7
DCAR_029539 Daucus carota HOM05D002708 ORTHO05D003516 4.8e-26 120.9 69 79.7
Lj9A548G53 Lonicera japonica HOM05D002708 ORTHO05D003516 4.8e-26 120.9 69 78.3
Nitab4.5_0012432g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 4.8e-26 120.9 69 79.7
Solyc01g088370.3 Solanum lycopersicum HOM05D002708 ORTHO05D003516 4.8e-26 120.9 69 79.7
Sopen01g035200 Solanum pennellii HOM05D002708 ORTHO05D003516 4.8e-26 120.9 69 79.7
PGSC0003DMG400001674 Solanum tuberosum HOM05D002708 ORTHO05D003516 4.8e-26 120.9 69 79.7
Lsat_1_v5_gn_7_11740 Lactuca sativa HOM05D002708 ORTHO05D003516 6.3e-26 120.6 69 78.3
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 1.8e-25 119.0 69 76.8
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 1.8e-25 119.0 69 76.8
CSS0041941 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 2.4e-25 118.6 69 78.3
Nn3g18494 Nelumbo nucifera HOM05D002708 ORTHO05D003516 3.1e-25 118.2 69 78.3
Oeu002888.1 Olea europaea HOM05D002708 ORTHO05D003516 3.1e-25 118.2 69 75.4
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 3.1e-25 118.2 69 76.8
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 3.1e-25 118.2 69 76.8
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 3.1e-25 118.2 69 76.8
Dinv44002 Davidia involucrata HOM05D002708 ORTHO05D003516 4.1e-25 117.9 69 76.8
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 5.3e-25 117.5 69 76.8
MBI19_g28098_MAGBIO Magnolia biondii HOM05D002708 ORTHO05D003516 5.3e-25 117.5 69 78.3
MSTRG.20407 Avicennia marina HOM05D002708 ORTHO05D003516 7.0e-25 117.1 69 75.4
Migut.B01470 Erythranthe guttata HOM05D002708 ORTHO05D003516 7.0e-25 117.1 69 75.4
Nn4g24628 Nelumbo nucifera HOM05D002708 ORTHO05D003516 7.0e-25 117.1 69 78.3
TAR375G0643 Trochodendron aralioides HOM05D002708 ORTHO05D003516 7.0e-25 117.1 69 78.3
unitig_0.g1327 Utricularia gibba HOM05D002708 ORTHO05D003516 7.0e-25 117.1 68 76.5
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 9.1e-25 116.7 69 75.4
Haze_24936 Corylus avellana HOM05D002708 ORTHO05D003516 1.6e-24 115.9 69 75.4
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 1.6e-24 115.9 69 73.9
QL02p018118 Quercus lobata HOM05D002708 ORTHO05D003516 1.6e-24 115.9 69 75.4
Thecc.02G010700 Theobroma cacao HOM05D002708 ORTHO05D003516 2.7e-24 115.2 69 75.4
GSVIVG01036012001 Vitis vinifera HOM05D002708 ORTHO05D003516 2.7e-24 115.2 69 73.9
Aqoxy7G03410 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 3.5e-24 114.8 69 73.9
Ciclev10007609m.g Citrus clementina HOM05D002708 ORTHO05D003516 3.5e-24 114.8 69 75.4
Medtr3g105430 Medicago truncatula HOM05D002708 ORTHO05D003516 3.5e-24 114.8 69 73.9
Nitab4.5_0001476g0150 Nicotiana tabacum HOM05D002708 ORTHO05D003516 3.5e-24 114.8 69 76.8
Nitab4.5_0009957g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 3.5e-24 114.8 69 76.8
Psat5g034880 Pisum sativum HOM05D002708 ORTHO05D003516 4.5e-24 114.4 69 72.5
TPR.G21430 Trifolium pratense HOM05D002708 ORTHO05D003516 4.5e-24 114.4 69 73.9
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 5.9e-24 114.0 69 72.5
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 5.9e-24 114.0 69 71.0
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 7.7e-24 113.6 69 72.5
vmacro21095 Vaccinium macrocarpon HOM05D002708 ORTHO05D003516 7.7e-24 113.6 69 75.4
EL10Ac4g08928 Beta vulgaris HOM05D002708 ORTHO05D003516 1.0e-23 113.2 69 71.0
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 1.3e-23 112.8 68 75.0
SGA_v2.0_scaffold85G26804 Striga asiatica HOM05D002708 ORTHO05D003516 1.3e-23 112.8 69 71.0
Cfa017363 Carpinus fangiana HOM05D002708 ORTHO05D003516 1.7e-23 112.5 69 72.5
Ca_15806_v3 Cicer arietinum L. HOM05D002708 ORTHO05D003516 1.7e-23 112.5 69 72.5
Haze_20811 Corylus avellana HOM05D002708 ORTHO05D003516 1.7e-23 112.5 69 72.5
Glyma.07G107700 Glycine max HOM05D002708 ORTHO05D003516 1.7e-23 112.5 69 72.5
Lalb_Chr08g0244681 Lupinus albus HOM05D002708 ORTHO05D003516 1.7e-23 112.5 69 71.0
Potri.018G015200 Populus trichocarpa HOM05D002708 ORTHO05D003516 1.7e-23 112.5 69 73.9
VMungo1309G2216 Vigna mungo HOM05D002708 ORTHO05D003516 1.7e-23 112.5 69 72.5
EL10Ac5g11414 Beta vulgaris HOM05D002708 ORTHO05D003516 2.2e-23 112.1 69 69.6
Cpa.g.sc17.146 Carica papaya HOM05D002708 ORTHO05D003516 2.2e-23 112.1 69 72.5
Cfa002667 Carpinus fangiana HOM05D002708 ORTHO05D003516 2.2e-23 112.1 69 72.5
Cfa013020 Carpinus fangiana HOM05D002708 ORTHO05D003516 2.2e-23 112.1 69 72.5
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 2.2e-23 112.1 69 72.5
Sc20g0000810 Simmondsia chinensis HOM05D002708 ORTHO05D003516 2.2e-23 112.1 69 71.0
arahy.Tifrunner.gnm1.ann1.9YLT9A Arachis hypogaea HOM05D002708 ORTHO05D003516 2.9e-23 111.7 69 71.0
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 2.9e-23 111.7 69 71.0
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 2.9e-23 111.7 69 71.0
Glyma.03G002400 Glycine max HOM05D002708 ORTHO05D003516 2.9e-23 111.7 69 71.0
Lalb_Chr23g0268061 Lupinus albus HOM05D002708 ORTHO05D003516 2.9e-23 111.7 69 72.5
SalBow5G4312 Salvia bowleyana HOM05D002708 ORTHO05D003516 2.9e-23 111.7 69 71.0
CiPaw.08G004600 Carya illinoinensis HOM05D002708 ORTHO05D003516 3.8e-23 111.3 69 69.6
Prupe.6G358600 Prunus persica HOM05D002708 ORTHO05D003516 5.0e-23 110.9 69 71.0
ClCG09G010530 Citrullus lanatus HOM05D002708 ORTHO05D003516 6.5e-23 110.5 69 69.6
Eucgr.J02249 Eucalyptus grandis HOM05D002708 ORTHO05D003516 6.5e-23 110.5 69 73.9
Mapoly0108s0028 Marchantia polymorpha HOM05D002708 ORTHO05D003516 6.5e-23 110.5 69 71.0
Potri.006G267500 Populus trichocarpa HOM05D002708 ORTHO05D003516 6.5e-23 110.5 69 71.0
AUR62004771 Chenopodium quinoa HOM05D002708 ORTHO05D003516 8.5e-23 110.2 69 69.6
AUR62037481 Chenopodium quinoa HOM05D002708 ORTHO05D003516 8.5e-23 110.2 69 69.6
Gohir.A12G046100 Gossypium hirsutum HOM05D002708 ORTHO05D003516 8.5e-23 110.2 69 71.0
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 8.5e-23 110.2 69 71.0
AagrBONN_evm.TU.Sc2ySwM_117.472 Anthoceros agrestis HOM05D002708 ORTHO05D003516 1.1e-22 109.8 69 71.0
MELO3C013234.2 Cucumis melo HOM05D002708 ORTHO05D003516 1.1e-22 109.8 69 69.6
Phvul.009G084000 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 1.1e-22 109.8 69 71.0
Phvul.009G084100 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 1.1e-22 109.8 69 71.0
COL.COLO4_17667 Corchorus olitorius HOM05D002708 ORTHO05D003516 1.5e-22 109.4 69 71.0
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 1.9e-22 109.0 69 71.0
MD04G1241100 Malus domestica HOM05D002708 ORTHO05D003516 1.9e-22 109.0 69 69.6
MD12G1258100 Malus domestica HOM05D002708 ORTHO05D003516 1.9e-22 109.0 69 69.6
Rhsim01G0145200 Rhododendron simsii HOM05D002708 ORTHO05D003516 1.9e-22 109.0 69 73.9
CSS0024835 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 2.5e-22 108.6 69 71.0
CSS0039264 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 2.5e-22 108.6 69 71.0
Gohir.A03G216900 Gossypium hirsutum HOM05D002708 ORTHO05D003516 2.5e-22 108.6 69 71.0
Duzib052G0664 Durio zibethinus HOM05D002708 ORTHO05D003516 3.2e-22 108.2 67 70.1
Gohir.D12G045200 Gossypium hirsutum HOM05D002708 ORTHO05D003516 3.2e-22 108.2 69 69.6
Gorai.008G047600 Gossypium raimondii HOM05D002708 ORTHO05D003516 3.2e-22 108.2 69 69.6
Os10g0569200 Oryza sativa ssp. japonica HOM05D002708 ORTHO05D003516 3.2e-22 108.2 69 71.0
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 3.2e-22 108.2 69 69.6
Sed0015739 Sechium edule HOM05D002708 ORTHO05D003516 3.2e-22 108.2 69 68.1
TWI32G0606 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 3.2e-22 108.2 69 68.1
Gohir.D02G238500 Gossypium hirsutum HOM05D002708 ORTHO05D003516 4.2e-22 107.8 69 71.0
Gorai.005G267000 Gossypium raimondii HOM05D002708 ORTHO05D003516 4.2e-22 107.8 69 71.0
SGA_v2.0_scaffold578G53025 Striga asiatica HOM05D002708 ORTHO05D003516 5.5e-22 107.5 70 70.0
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 7.2e-22 107.1 69 66.7
TWI63G0006 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 7.2e-22 107.1 67 70.1
ATR0794G148 Amborella trichopoda HOM05D002708 ORTHO05D003516 9.4e-22 106.7 69 69.6
Atru.chr7.2587 Acer truncatum HOM05D002708 ORTHO05D003516 1.6e-21 105.9 69 72.5
Pp3c11_25960 Physcomitrium patens HOM05D002708 ORTHO05D003516 1.6e-21 105.9 69 68.1
QL08p065006 Quercus lobata HOM05D002708 ORTHO05D003516 1.6e-21 105.9 69 68.1
FvH4_6g00800 Fragaria vesca HOM05D002708 ORTHO05D003516 2.1e-21 105.5 69 66.7
FAN02G3944 Fragaria x ananassa HOM05D002708 ORTHO05D003516 2.1e-21 105.5 69 66.7
FAN05G3540 Fragaria x ananassa HOM05D002708 ORTHO05D003516 2.1e-21 105.5 69 66.7
FAN14G3709 Fragaria x ananassa HOM05D002708 ORTHO05D003516 2.1e-21 105.5 69 66.7
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 2.1e-21 105.5 69 66.7
FAN09G1379 Fragaria x ananassa HOM05D002708 ORTHO05D003516 4.7e-21 104.4 69 65.2
QL02p018221 Quercus lobata HOM05D002708 ORTHO05D003516 6.1e-21 104.0 69 68.1
Nitab4.5_0015087g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 8.0e-21 103.6 63 76.2
SMO270G0119 Selaginella moellendorffii HOM05D002708 ORTHO05D003516 1.0e-20 103.2 69 68.1
SEGI_02227 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.0e-20 103.2 69 68.1
SEGI_26246 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.0e-20 103.2 69 68.1
SEGI_28578 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.0e-20 103.2 69 68.1
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 2.3e-20 102.1 69 66.7
arahy.Tifrunner.gnm1.ann1.CBM3F9 Arachis hypogaea HOM05D002708 ORTHO05D003516 3.0e-20 101.7 71 64.8
CANSAT25G3904 Cannabis sativa HOM05D002708 ORTHO05D003516 1.5e-19 99.4 68 64.7
Pp3c7_370 Physcomitrium patens HOM05D002708 ORTHO05D003516 2.6e-19 98.6 69 62.3
THA.LOC104803605 Tarenaya hassleriana HOM05D002708 ORTHO05D003516 3.4e-19 98.2 69 62.3
Actinidia33292 Actinidia chinensis HOM05D002708 ORTHO05D003516 5.7e-19 97.4 59 74.6
A04p19190 Brassica napus HOM05D002708 ORTHO05D003516 9.8e-19 96.7 71 59.2
BraA04t17520Z Brassica rapa HOM05D002708 ORTHO05D003516 9.8e-19 96.7 71 59.2
AL6G39390 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.7e-18 95.9 69 59.4
AT5G25780 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 1.7e-18 95.9 69 59.4
AT5G27640 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 1.7e-18 95.9 69 59.4
BcaB06g28016 Brassica carinata HOM05D002708 ORTHO05D003516 1.7e-18 95.9 69 59.4
BcaC02g08409 Brassica carinata HOM05D002708 ORTHO05D003516 1.7e-18 95.9 69 59.4
A09p56110 Brassica napus HOM05D002708 ORTHO05D003516 1.7e-18 95.9 69 59.4
BolC4t27001H Brassica oleracea HOM05D002708 ORTHO05D003516 1.7e-18 95.9 69 59.4
BraA09t41006Z Brassica rapa HOM05D002708 ORTHO05D003516 1.7e-18 95.9 69 59.4
Carub.0006s2495 Capsella rubella HOM05D002708 ORTHO05D003516 1.7e-18 95.9 69 59.4
Sp4g03800 Schrenkiella parvula HOM05D002708 ORTHO05D003516 1.7e-18 95.9 69 59.4
arahy.Tifrunner.gnm1.ann1.113R7L Arachis hypogaea HOM05D002708 ORTHO05D018503 2.2e-18 95.5 64 67.2
Thhalv10000061m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 2.8e-18 95.1 69 59.4
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 3.7e-18 94.7 69 58.0
AL6G38780 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 3.7e-18 94.7 69 58.0
BcaC07g40905 Brassica carinata HOM05D002708 ORTHO05D003516 3.7e-18 94.7 69 58.0
C08p39040 Brassica napus HOM05D002708 ORTHO05D003516 3.7e-18 94.7 69 58.0
BolC8t51477H Brassica oleracea HOM05D002708 ORTHO05D003516 3.7e-18 94.7 69 58.0
C04p54590 Brassica napus HOM05D002708 ORTHO05D003516 1.1e-17 93.2 69 58.0
TPR.G27979 Trifolium pratense HOM05D002708 ORTHO05D003516 1.1e-17 93.2 63 66.7
Glyma.04G057632 Glycine max HOM05D002708 ORTHO05D003516 1.4e-17 92.8 73 61.6
HanXRQChr08g0228391 Helianthus annuus HOM05D002708 ORTHO05D018503 1.8e-17 92.4 43 97.7
HanXRQChr08g0228401 Helianthus annuus HOM05D002708 ORTHO05D018503 1.8e-17 92.4 43 97.7
CARHR294550 Cardamine hirsuta HOM05D002708 ORTHO05D003516 2.4e-17 92.0 69 56.5
CBR_g32387 Chara braunii HOM05D002708 ORTHO05D003516 2.4e-17 92.0 68 55.9
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 2.4e-17 92.0 54 75.9
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 5.4e-17 90.9 69 56.5
Sed0010327 Sechium edule HOM05D002708 ORTHO05D003516 5.4e-17 90.9 69 55.1
SEGI_19659 Sequoiadendron giganteum HOM05D002708 ORTHO05D018503 5.4e-17 90.9 69 60.9
COL.COLO4_30887 Corchorus olitorius HOM05D002708 ORTHO05D003516 1.6e-16 89.4 69 62.3
SEGI_34294 Sequoiadendron giganteum HOM05D002708 ORTHO05D010929 1.7e-15 85.9 65 61.5
HPP92_028477 Vanilla planifolia HOM05D002708 ORTHO05D003516 2.3e-15 85.5 81 56.8
Cre03.g190100 Chlamydomonas reinhardtii HOM05D002708 ORTHO05D003516 8.0e-13 77.0 70 47.1
HPP92_005388 Vanilla planifolia HOM05D002708 ORTHO05D003516 2.3e-12 75.5 67 53.7
AL1G59060 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 5.2e-12 74.3 69 52.2
Aa31LG2G18580 Aethionema arabicum HOM05D002708 ORTHO05D003516 2.0e-11 72.4 69 42.0
Actinidia21606 Actinidia chinensis HOM05D002708 ORTHO05D003516 7.5e-11 70.5 42 73.8
MCO03G077 Micromonas commoda HOM05D002708 ORTHO05D003516 1.3e-10 69.7 69 44.9
Peaxi162Scf01124g00123 Petunia axillaris HOM05D002708 ORTHO05D003516 1.3e-10 69.7 42 73.8
BcaNung04121 Brassica carinata HOM05D002708 ORTHO05D003516 2.2e-10 68.9 69 46.4
Dinv09576 Davidia involucrata HOM05D000985 ORTHO05D018503 3.7e-10 68.2 42 73.8
Thhalv10027018m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 2.4e-09 65.5 71 42.3
CSS0029201 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 3.5e-08 61.6 69 46.4
Thhalv10012255m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 1.7e-07 59.3 70 45.7
PRCOL_00000791 Prasinoderma coloniale HOM05D002708 ORTHO05D003516 2.9e-07 58.5 69 39.1


User provided reference genes

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