Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0097231 Helianthus annuus HOM05D004669 ORTHO05D005767 9.2e-93 343.6 178 100.0
HanXRQChr04g0096711 Helianthus annuus HOM05D004669 ORTHO05D005767 2.0e-87 325.9 200 87.5
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 2.0e-87 325.9 200 87.5
Lsat_1_v5_gn_1_33541 Lactuca sativa HOM05D004669 ORTHO05D005767 4.4e-79 298.1 200 78.0
ECA247G3964 Erigeron canadensis HOM05D004669 ORTHO05D005767 6.0e-76 287.7 200 75.0
ECA247G1145 Erigeron canadensis HOM05D004669 ORTHO05D005767 7.8e-76 287.3 197 75.1
Dinv30566 Davidia involucrata HOM05D004669 ORTHO05D005767 4.9e-70 268.1 201 70.1
GSVIVG01017243001 Vitis vinifera HOM05D004669 ORTHO05D005767 1.4e-69 266.5 200 69.5
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 3.5e-68 261.9 200 69.5
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 3.5e-68 261.9 200 69.5
Cpa.g.sc10.221 Carica papaya HOM05D004669 ORTHO05D005767 4.6e-68 261.5 200 71.0
Rhsim08G0216600 Rhododendron simsii HOM05D004669 ORTHO05D005767 4.6e-68 261.5 200 68.5
QL05p027590 Quercus lobata HOM05D004669 ORTHO05D005767 6.0e-68 261.2 200 68.0
Phvul.009G217600 Phaseolus vulgaris HOM05D004669 ORTHO05D005767 1.0e-67 260.4 200 68.0
PGSC0003DMG400005691 Solanum tuberosum HOM05D004669 ORTHO05D005767 1.3e-67 260.0 200 68.0
Cc04_g03970 Coffea canephora HOM05D004669 ORTHO05D005767 1.7e-67 259.6 200 67.0
Solyc03g120080.4 Solanum lycopersicum HOM05D004669 ORTHO05D005767 1.7e-67 259.6 200 67.5
Sopen03g038950 Solanum pennellii HOM05D004669 ORTHO05D005767 1.7e-67 259.6 200 67.5
Potri.001G173500 Populus trichocarpa HOM05D004669 ORTHO05D005767 2.3e-67 259.2 200 68.5
VMungo1309G3168 Vigna mungo HOM05D004669 ORTHO05D005767 3.0e-67 258.8 200 67.0
Peaxi162Scf00015g00456 Petunia axillaris HOM05D004669 ORTHO05D005767 3.9e-67 258.5 200 67.0
Potri.003G060500 Populus trichocarpa HOM05D004669 ORTHO05D005767 3.9e-67 258.5 200 67.5
Actinidia01772 Actinidia chinensis HOM05D004669 ORTHO05D005767 5.1e-67 258.1 200 68.5
Prupe.3G078900 Prunus persica HOM05D004669 ORTHO05D005767 5.1e-67 258.1 200 69.0
MBI04_g45208_MAGBIO Magnolia biondii HOM05D004669 ORTHO05D005767 6.6e-67 257.7 200 66.5
MD17G1203900 Malus domestica HOM05D004669 ORTHO05D005767 6.6e-67 257.7 200 67.5
TAR636G0609 Trochodendron aralioides HOM05D004669 ORTHO05D005767 6.6e-67 257.7 200 66.5
Nitab4.5_0023790g0010 Nicotiana tabacum HOM05D004669 ORTHO05D005767 8.6e-67 257.3 200 67.0
CAN.G438.78 Capsicum annuum HOM05D004669 ORTHO05D005767 1.1e-66 256.9 200 68.5
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 2.5e-66 255.8 200 68.0
TWI12G0769 Tripterygium wilfordii HOM05D004669 ORTHO05D005767 3.3e-66 255.4 200 67.5
Nitab4.5_0000671g0170 Nicotiana tabacum HOM05D004669 ORTHO05D005767 4.3e-66 255.0 200 66.5
Sabra01G0138300 Salix brachista HOM05D004669 ORTHO05D005767 4.3e-66 255.0 200 67.5
SGA_v2.0_scaffold5G02661 Striga asiatica HOM05D004669 ORTHO05D005767 5.6e-66 254.6 200 67.0
Oeu052287.2 Olea europaea HOM05D004669 ORTHO05D005767 7.3e-66 254.2 200 66.5
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 1.2e-65 253.4 200 67.0
MSTRG.22725 Avicennia marina HOM05D004669 ORTHO05D005767 1.6e-65 253.1 200 67.5
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 4.7e-65 251.5 198 66.7
Aqoxy7G02078 Aquilegia oxysepala HOM05D004669 ORTHO05D005767 8.1e-65 250.8 200 66.5
CsaV3_4G001370 Cucumis sativus L. HOM05D004669 ORTHO05D005767 1.1e-64 250.4 200 66.0
Ciclev10024861m.g Citrus clementina HOM05D004669 ORTHO05D005767 1.8e-64 249.6 200 64.0
Lj5A68G59 Lonicera japonica HOM05D004669 ORTHO05D005767 1.8e-64 249.6 200 67.0
Manes.11G052400 Manihot esculenta HOM05D004669 ORTHO05D005767 1.8e-64 249.6 200 65.5
AUR62016387 Chenopodium quinoa HOM05D004669 ORTHO05D005767 2.4e-64 249.2 198 66.2
ClCG06G013830 Citrullus lanatus HOM05D004669 ORTHO05D005767 2.4e-64 249.2 200 66.0
ClCG07G012820 Citrullus lanatus HOM05D004669 ORTHO05D005767 3.1e-64 248.8 200 66.0
vmacro18956 Vaccinium macrocarpon HOM05D004669 ORTHO05D005767 4.0e-64 248.4 201 66.7
AUR62011570 Chenopodium quinoa HOM05D004669 ORTHO05D005767 5.2e-64 248.1 198 66.2
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 5.2e-64 248.1 200 66.0
Migut.I00803 Erythranthe guttata HOM05D004669 ORTHO05D005767 6.9e-64 247.7 200 66.0
CANSAT56G1977 Cannabis sativa HOM05D004669 ORTHO05D005767 9.0e-64 247.3 200 66.5
FAN14G3011 Fragaria x ananassa HOM05D004669 ORTHO05D005767 9.0e-64 247.3 198 66.2
Glyma.09G084600 Glycine max HOM05D004669 ORTHO05D005767 9.0e-64 247.3 200 66.0
Gohir.D09G084800 Gossypium hirsutum HOM05D004669 ORTHO05D005767 9.0e-64 247.3 200 64.5
Gorai.006G100800 Gossypium raimondii HOM05D004669 ORTHO05D005767 9.0e-64 247.3 200 64.5
MELO3C017903.2 Cucumis melo HOM05D004669 ORTHO05D005767 1.2e-63 246.9 200 64.5
FvH4_6g30400 Fragaria vesca HOM05D004669 ORTHO05D005767 1.2e-63 246.9 198 65.7
FAN09G4623 Fragaria x ananassa HOM05D004669 ORTHO05D005767 1.2e-63 246.9 198 65.7
Medtr7g076230 Medicago truncatula HOM05D004669 ORTHO05D005767 1.5e-63 246.5 200 67.0
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 2.0e-63 246.1 198 65.2
TAR627G0296 Trochodendron aralioides HOM05D004669 ORTHO05D005767 2.6e-63 245.7 200 64.5
FAN02G3057 Fragaria x ananassa HOM05D004669 ORTHO05D005767 3.4e-63 245.4 198 65.2
FAN05G0230 Fragaria x ananassa HOM05D004669 ORTHO05D005767 3.4e-63 245.4 198 65.2
Glyma.15G193000 Glycine max HOM05D004669 ORTHO05D005767 3.4e-63 245.4 200 65.5
TPR.G37778 Trifolium pratense HOM05D004669 ORTHO05D005767 5.8e-63 244.6 200 66.5
PSO541G6522 Papaver somniferum HOM05D004669 ORTHO05D005767 7.6e-63 244.2 198 63.6
RcHm_v2.0_Chr2g0136751 Rosa chinensis HOM05D004669 ORTHO05D005767 7.6e-63 244.2 198 65.7
THA.LOC104812492 Tarenaya hassleriana HOM05D004669 ORTHO05D005767 1.3e-62 243.4 198 64.6
CiPaw.02G154600 Carya illinoinensis HOM05D004669 ORTHO05D005767 2.2e-62 242.7 200 64.5
Psat0s4195g0120 Pisum sativum HOM05D004669 ORTHO05D005767 2.9e-62 242.3 200 65.5
PGR031G2027 Punica granatum HOM05D004669 ORTHO05D005767 2.9e-62 242.3 198 64.1
Ah.08g209920 Amaranthus hybridus HOM05D004669 ORTHO05D005767 4.9e-62 241.5 198 64.6
Lalb_Chr11g0073441 Lupinus albus HOM05D004669 ORTHO05D005767 4.9e-62 241.5 200 65.0
TAR627G0037 Trochodendron aralioides HOM05D004669 ORTHO05D005767 4.9e-62 241.5 200 63.5
Nn8g39375 Nelumbo nucifera HOM05D004669 ORTHO05D005767 8.4e-62 240.7 200 64.5
PSO675G6139 Papaver somniferum HOM05D004669 ORTHO05D005767 8.4e-62 240.7 198 63.1
Sed0010016 Sechium edule HOM05D004669 ORTHO05D005767 8.4e-62 240.7 200 64.0
EL10Ac9g21952 Beta vulgaris HOM05D004669 ORTHO05D005767 3.2e-61 238.8 198 63.6
Sc12g0008880 Simmondsia chinensis HOM05D004669 ORTHO05D005767 4.2e-61 238.4 198 63.1
C08p17210 Brassica napus HOM05D004669 ORTHO05D005767 5.4e-61 238.0 201 62.7
BolC8t49350H Brassica oleracea HOM05D004669 ORTHO05D005767 5.4e-61 238.0 201 62.7
Sed0001284 Sechium edule HOM05D004669 ORTHO05D005767 7.1e-61 237.7 200 63.0
Thhalv10006752m.g Eutrema salsugineum HOM05D004669 ORTHO05D005767 1.6e-60 236.5 198 62.1
Cfa002013 Carpinus fangiana HOM05D004669 ORTHO05D005767 2.1e-60 236.1 200 64.5
BcaC07g38791 Brassica carinata HOM05D004669 ORTHO05D005767 3.5e-60 235.3 198 62.6
Eucgr.J03040 Eucalyptus grandis HOM05D004669 ORTHO05D005767 4.6e-60 235.0 191 67.0
AT1G15440 Arabidopsis thaliana HOM05D004669 ORTHO05D005767 6.0e-60 234.6 198 63.6
Ca_02514_v3 Cicer arietinum L. HOM05D004669 ORTHO05D005767 6.0e-60 234.6 200 64.5
Sed0027531 Sechium edule HOM05D004669 ORTHO05D005767 6.0e-60 234.6 200 63.0
BcaB03g13059 Brassica carinata HOM05D004669 ORTHO05D005767 1.0e-59 233.8 198 62.1
A08p31560 Brassica napus HOM05D004669 ORTHO05D005767 1.3e-59 233.4 198 62.6
BraA08t35078Z Brassica rapa HOM05D004669 ORTHO05D005767 1.3e-59 233.4 198 62.6
Carub.0001s1524 Capsella rubella HOM05D004669 ORTHO05D005767 2.3e-59 232.6 198 63.6
LjContig00155g0017542 Lotus japonicus HOM05D004669 ORTHO05D005767 3.0e-59 232.3 200 62.0
Zm00001eb293800 Zea mays HOM05D004669 ORTHO05D005767 3.9e-59 231.9 200 62.0
CARHR016000 Cardamine hirsuta HOM05D004669 ORTHO05D005767 5.1e-59 231.5 198 61.6
Haze_16509 Corylus avellana HOM05D004669 ORTHO05D005767 5.1e-59 231.5 200 64.0
Sed0020458 Sechium edule HOM05D004669 ORTHO05D005767 5.1e-59 231.5 200 63.5
HPP92_024437 Vanilla planifolia HOM05D004669 ORTHO05D005767 6.6e-59 231.1 200 61.5
AL1G27560 Arabidopsis lyrata HOM05D004669 ORTHO05D005767 8.7e-59 230.7 198 63.1
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 1.5e-58 229.9 200 60.0
A06p11500 Brassica napus HOM05D000746 ORTHO05D005767 4.3e-58 228.4 198 61.1
BraA06t24327Z Brassica rapa HOM05D000746 ORTHO05D005767 4.3e-58 228.4 198 61.1
Aa31LG7G190 Aethionema arabicum HOM05D004669 ORTHO05D005767 5.6e-58 228.0 217 59.4
C05p13620 Brassica napus HOM05D004669 ORTHO05D005767 1.3e-57 226.9 198 61.1
BolC5t30098H Brassica oleracea HOM05D004669 ORTHO05D005767 1.3e-57 226.9 198 61.1
CDE04G1486 Ceratophyllum demersum HOM05D004669 ORTHO05D005767 2.8e-57 225.7 198 59.1
Sp1g13810 Schrenkiella parvula HOM05D004669 ORTHO05D005767 2.8e-57 225.7 198 60.1
PSO832G2238 Papaver somniferum HOM05D004669 ORTHO05D005767 6.2e-57 224.6 192 61.5
PSO832G4299 Papaver somniferum HOM05D004669 ORTHO05D005767 6.2e-57 224.6 192 61.5
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 2.7e-52 209.1 200 55.0
ECA038G0001 Erigeron canadensis HOM05D004669 ORTHO05D005767 2.1e-49 199.5 150 70.0
SMO356G0696 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 3.2e-45 185.7 196 55.1
Manes.04G117100 Manihot esculenta HOM05D004669 ORTHO05D005767 2.7e-44 182.6 169 56.8
AagrBONN_evm.TU.Sc2ySwM_228.5273 Anthoceros agrestis HOM05D004669 ORTHO05D005767 3.5e-44 182.2 200 52.5
CBR_g51007 Chara braunii HOM05D004669 ORTHO05D005767 3.0e-43 179.1 198 49.0
unitig_0.g1124 Utricularia gibba HOM05D004669 ORTHO05D005767 2.6e-39 166.0 163 53.4
Pp3c7_9990 Physcomitrium patens HOM05D004669 ORTHO05D005767 3.4e-39 165.6 198 51.5
Atru.chr1.3106 Acer truncatum HOM05D004669 ORTHO05D005767 1.1e-37 160.6 105 77.1
ECA247G2328 Erigeron canadensis HOM05D004669 ORTHO05D005767 1.1e-37 160.6 101 77.2
COL.COLO4_12887 Corchorus olitorius HOM05D004669 ORTHO05D005767 9.3e-37 157.5 107 73.8
Mapoly0001s0129 Marchantia polymorpha HOM05D004669 ORTHO05D005767 1.2e-36 157.1 198 47.5
Gohir.A09G084900 Gossypium hirsutum HOM05D004669 ORTHO05D005767 3.5e-36 155.6 107 72.9
Atru.chr1.3112 Acer truncatum HOM05D004669 ORTHO05D005767 5.0e-30 135.2 92 75.0
Cre06.g254150 Chlamydomonas reinhardtii HOM05D004669 ORTHO05D005767 5.0e-30 135.2 203 38.4
Psat3g100960 Pisum sativum HOM05D004669 ORTHO05D005767 1.4e-29 133.7 97 71.1
Actinidia15802 Actinidia chinensis HOM05D004669 ORTHO05D005767 1.9e-26 123.2 81 74.1
TAR627G0283 Trochodendron aralioides HOM05D004669 ORTHO05D005767 3.7e-25 119.0 81 74.1
DCAR_000230 Daucus carota HOM05D004669 ORTHO05D005767 1.5e-23 113.6 78 71.8
CDE02G1289 Ceratophyllum demersum HOM05D004669 ORTHO05D005767 5.5e-21 105.1 117 47.0
SMO336G0019 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 2.0e-18 96.7 176 42.6
SMO336G0033 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.8e-16 90.1 184 39.1
MCO13G313 Micromonas commoda HOM05D004669 ORTHO05D005767 2.0e-15 86.7 225 29.3
Psat4g082440 Pisum sativum HOM05D004669 ORTHO05D005767 5.5e-13 78.6 51 78.4
MD06G1214300 Malus domestica HOM05D004669 ORTHO05D005767 9.4e-13 77.8 44 88.6
MD09G1221500 Malus domestica HOM05D004669 ORTHO05D005767 9.4e-13 77.8 44 88.6
SMO174G0024 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 6.7e-11 71.6 180 36.1
SMO337G0040 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 1.1e-10 70.9 135 40.7
SMO347G0477 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 2.2e-09 66.6 49 65.3
Os05g0519500 Oryza sativa ssp. japonica HOM05D004669 ORTHO05D005767 6.3e-09 65.1 42 78.6
MD09G1221400 Malus domestica HOM05D004669 ORTHO05D005767 4.1e-08 62.4 78 48.7
HanXRQChr14g0426971 Helianthus annuus HOM05D004669 ORTHO05D005767 2.6e-07 59.7 40 72.5
SMO337G0094 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 6.5e-06 55.1 76 47.4


User provided reference genes

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