Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0087681 Helianthus annuus HOM05D005264 ORTHO05D005428 1.2e-66 256.5 139 100.0
HanXRQChr06g0171921 Helianthus annuus HOM05D005264 ORTHO05D005428 4.3e-37 158.3 100 89.0
HanXRQChr17g0540751 Helianthus annuus HOM05D005264 ORTHO05D005428 4.7e-36 154.8 100 87.0
ECA246G0499 Erigeron canadensis HOM05D005264 ORTHO05D005428 4.0e-35 151.8 100 78.0
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 5.2e-35 151.4 100 85.0
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 2.2e-33 146.0 103 83.5
Lj6C722G15 Lonicera japonica HOM05D005264 ORTHO05D005428 2.2e-33 146.0 100 82.0
Hund27680 Selenicereus undatus HOM05D005264 ORTHO05D005428 4.9e-33 144.8 105 76.2
Hund27681 Selenicereus undatus HOM05D005264 ORTHO05D005428 4.9e-33 144.8 105 76.2
EL10Ac9g22906 Beta vulgaris HOM05D005264 ORTHO05D005428 1.1e-32 143.7 100 77.0
DCAR_030406 Daucus carota HOM05D005264 ORTHO05D005428 1.1e-32 143.7 100 83.0
PSO063G3914 Papaver somniferum HOM05D005264 ORTHO05D005428 1.1e-32 143.7 100 77.0
PSO782G4655 Papaver somniferum HOM05D005264 ORTHO05D005428 1.1e-32 143.7 100 77.0
TWI77G0283 Tripterygium wilfordii HOM05D005264 ORTHO05D005428 1.1e-32 143.7 105 69.5
SHI04181 Sapria himalayana HOM05D005264 ORTHO05D005428 2.4e-32 142.5 107 65.4
Gohir.D01G138800 Gossypium hirsutum HOM05D005264 ORTHO05D005428 3.2e-32 142.1 105 72.4
Lalb_Chr04g0258911 Lupinus albus HOM05D005264 ORTHO05D005428 3.2e-32 142.1 100 73.0
Lalb_Chr10g0095091 Lupinus albus HOM05D005264 ORTHO05D005428 7.1e-32 141.0 100 72.0
Ca_03040_v3 Cicer arietinum L. HOM05D005264 ORTHO05D005428 9.2e-32 140.6 100 71.0
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 9.2e-32 140.6 100 82.0
Cfa008720 Carpinus fangiana HOM05D005264 ORTHO05D001742 1.2e-31 140.2 100 71.0
Lj3g0025490 Lotus japonicus HOM05D005264 ORTHO05D005428 1.2e-31 140.2 103 68.9
CiPaw.05G167900 Carya illinoinensis HOM05D005264 ORTHO05D005428 1.6e-31 139.8 105 70.5
Haze_11731 Corylus avellana HOM05D005264 ORTHO05D005428 1.6e-31 139.8 107 65.4
TPR.G21570 Trifolium pratense HOM05D005264 ORTHO05D005428 1.6e-31 139.8 100 70.0
Rhsim09G0072300 Rhododendron simsii HOM05D005264 ORTHO05D005428 2.1e-31 139.4 106 68.9
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 2.1e-31 139.4 100 77.0
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 2.7e-31 139.0 100 73.0
Prupe.1G345000 Prunus persica HOM05D005264 ORTHO05D005428 2.7e-31 139.0 105 71.4
Aqoxy3G04289 Aquilegia oxysepala HOM05D005264 ORTHO05D005428 3.5e-31 138.7 100 81.0
Gorai.002G167000 Gossypium raimondii HOM05D005264 ORTHO05D005428 3.5e-31 138.7 105 78.1
Medtr4g074230 Medicago truncatula HOM05D005264 ORTHO05D005428 4.6e-31 138.3 100 69.0
Psat7g174160 Pisum sativum HOM05D005264 ORTHO05D005428 4.6e-31 138.3 100 69.0
Potri.008G085400 Populus trichocarpa HOM05D005264 ORTHO05D005428 4.6e-31 138.3 100 69.0
Gorai.002G167100 Gossypium raimondii HOM05D005264 ORTHO05D005428 6.0e-31 137.9 105 70.5
MD16G1000100 Malus domestica HOM05D005264 ORTHO05D005428 7.8e-31 137.5 105 66.7
Gohir.D01G138900 Gossypium hirsutum HOM05D005264 ORTHO05D005428 1.0e-30 137.1 105 77.1
Hma1.2p1_0285F.1_g113900 Hydrangea macrophylla HOM05D005264 ORTHO05D005428 1.0e-30 137.1 103 75.7
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 1.0e-30 137.1 103 68.9
Gohir.A01G146300 Gossypium hirsutum HOM05D005264 ORTHO05D005428 1.7e-30 136.3 105 78.1
FAN17G2909 Fragaria x ananassa HOM05D005264 ORTHO05D005428 3.0e-30 135.6 106 67.0
MD13G1008100 Malus domestica HOM05D005264 ORTHO05D005428 3.0e-30 135.6 100 74.0
Manes.15G115200 Manihot esculenta HOM05D005264 ORTHO05D005428 3.9e-30 135.2 105 77.1
Sed0010268 Sechium edule HOM05D005264 ORTHO05D005428 3.9e-30 135.2 103 77.7
HPP92_013043 Vanilla planifolia HOM05D005264 ORTHO05D005428 3.9e-30 135.2 105 65.7
MELO3C009842.2 Cucumis melo HOM05D005264 ORTHO05D005428 6.6e-30 134.4 103 77.7
CsaV3_3G041120 Cucumis sativus L. HOM05D005264 ORTHO05D005428 6.6e-30 134.4 103 77.7
Gohir.A01G146454 Gossypium hirsutum HOM05D005264 ORTHO05D005428 8.6e-30 134.0 105 70.5
GSVIVG01010206001 Vitis vinifera HOM05D005264 ORTHO05D005428 8.6e-30 134.0 100 80.0
CAN.G624.19 Capsicum annuum HOM05D005264 ORTHO05D005428 1.1e-29 133.7 101 81.2
Cpa.g.sc393.4 Carica papaya HOM05D005264 ORTHO05D005428 1.5e-29 133.3 100 80.0
FvH4_4g36691 Fragaria vesca HOM05D005264 ORTHO05D005428 1.5e-29 133.3 106 70.8
RcHm_v2.0_Chr4g0446411 Rosa chinensis HOM05D005264 ORTHO05D005428 1.5e-29 133.3 106 70.8
ATR0618G090 Amborella trichopoda HOM05D005264 ORTHO05D005428 1.9e-29 132.9 100 81.0
Thecc.02G294900 Theobroma cacao HOM05D005264 ORTHO05D005428 1.9e-29 132.9 105 77.1
Os07g0296200 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 2.5e-29 132.5 99 72.7
SGA_v2.0_scaffold42G15896 Striga asiatica HOM05D005264 ORTHO05D005428 2.5e-29 132.5 100 80.0
Solyc11g040050.3 Solanum lycopersicum HOM05D005264 ORTHO05D005428 3.3e-29 132.1 106 77.4
Sopen11g017230 Solanum pennellii HOM05D005264 ORTHO05D005428 3.3e-29 132.1 106 77.4
PGSC0003DMG400018999 Solanum tuberosum HOM05D005264 ORTHO05D005428 3.3e-29 132.1 106 77.4
Cc11_g02330 Coffea canephora HOM05D005264 ORTHO05D005428 4.3e-29 131.7 100 74.0
FAN07G0309 Fragaria x ananassa HOM05D005906 ORTHO05D007359 4.3e-29 131.7 101 73.3
FAN12G0559 Fragaria x ananassa HOM05D005906 ORTHO05D007359 4.3e-29 131.7 101 72.3
CANSAT54G0937 Cannabis sativa HOM05D005264 ORTHO05D005428 5.6e-29 131.3 105 76.2
COL.COLO4_16614 Corchorus olitorius HOM05D005264 ORTHO05D005428 5.6e-29 131.3 105 76.2
Actinidia04317 Actinidia chinensis HOM05D005264 ORTHO05D005428 7.3e-29 131.0 100 77.0
Nitab4.5_0002113g0070 Nicotiana tabacum HOM05D005264 ORTHO05D005428 7.3e-29 131.0 101 79.2
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 7.3e-29 131.0 104 75.0
CSS0010634 Camellia sinensis var. sinensis HOM05D005264 ORTHO05D005428 9.5e-29 130.6 102 77.5
Eucgr.G02564 Eucalyptus grandis HOM05D005264 ORTHO05D005428 9.5e-29 130.6 100 79.0
QL03p043270 Quercus lobata HOM05D005264 ORTHO05D005428 9.5e-29 130.6 100 78.0
arahy.Tifrunner.gnm1.ann1.4UU5Y7 Arachis hypogaea HOM05D005264 ORTHO05D005428 1.2e-28 130.2 100 75.0
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 1.2e-28 130.2 100 75.0
Dinv03019 Davidia involucrata HOM05D005264 ORTHO05D005428 1.2e-28 130.2 100 80.0
Peaxi162Scf00760g00024 Petunia axillaris HOM05D005264 ORTHO05D005428 1.2e-28 130.2 106 76.4
Nitab4.5_0007261g0060 Nicotiana tabacum HOM05D005264 ORTHO05D005428 1.6e-28 129.8 101 78.2
PGR142G0147 Punica granatum HOM05D005264 ORTHO05D005428 2.1e-28 129.4 100 79.0
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 2.1e-28 129.4 98 74.5
Glyma.12G028800 Glycine max HOM05D005264 ORTHO05D005428 3.6e-28 128.6 100 75.0
VMungo1127G0108 Vigna mungo HOM05D005264 ORTHO05D005428 3.6e-28 128.6 100 75.0
Duzib248G0599 Durio zibethinus HOM05D005264 ORTHO05D005428 4.7e-28 128.3 100 79.0
Ah.01g001700 Amaranthus hybridus HOM05D005264 ORTHO05D005428 6.2e-28 127.9 100 70.0
Phvul.011G032100 Phaseolus vulgaris HOM05D005264 ORTHO05D005428 6.2e-28 127.9 100 74.0
Migut.J00716 Erythranthe guttata HOM05D005264 ORTHO05D005428 8.1e-28 127.5 100 77.0
Glyma.11G103900 Glycine max HOM05D005264 ORTHO05D005428 8.1e-28 127.5 100 74.0
BcaB04g17259 Brassica carinata HOM05D005264 ORTHO05D005428 1.1e-27 127.1 100 65.0
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 1.1e-27 127.1 98 73.5
THA.LOC104826521 Tarenaya hassleriana HOM05D005264 ORTHO05D005428 5.2e-27 124.8 100 68.0
MSTRG.26597 Avicennia marina HOM05D005264 ORTHO05D005428 6.8e-27 124.4 100 63.0
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 8.9e-27 124.0 100 78.0
CARHR040350 Cardamine hirsuta HOM05D005264 ORTHO05D005428 2.6e-26 122.5 100 64.0
AL1G57940 Arabidopsis lyrata HOM05D005264 ORTHO05D005428 5.8e-26 121.3 100 63.0
AT1G50300 Arabidopsis thaliana HOM05D005264 ORTHO05D005428 7.6e-26 120.9 100 63.0
BraA08t32358Z Brassica rapa HOM05D005264 ORTHO05D005428 7.6e-26 120.9 100 62.0
Thhalv10011982m.g Eutrema salsugineum HOM05D005264 ORTHO05D005428 7.6e-26 120.9 100 63.0
A08p03250 Brassica napus HOM05D005264 ORTHO05D005428 9.9e-26 120.6 100 62.0
Carub.0001s3940 Capsella rubella HOM05D005264 ORTHO05D005428 9.9e-26 120.6 100 63.0
Oeu058145.2 Olea europaea HOM05D005264 ORTHO05D005428 9.9e-26 120.6 100 75.0
Sp1g37140 Schrenkiella parvula HOM05D005264 ORTHO05D005428 1.7e-25 119.8 100 62.0
BcaB07g33480 Brassica carinata HOM05D005264 ORTHO05D005428 2.2e-25 119.4 100 61.0
BcaC08g43212 Brassica carinata HOM05D005264 ORTHO05D005428 2.2e-25 119.4 100 61.0
A06p03250 Brassica napus HOM05D005264 ORTHO05D005428 2.2e-25 119.4 100 61.0
C06p05380 Brassica napus HOM05D005264 ORTHO05D005428 2.2e-25 119.4 100 61.0
BolC6t35643H Brassica oleracea HOM05D005264 ORTHO05D005428 2.2e-25 119.4 100 61.0
BraA06t23536Z Brassica rapa HOM05D005264 ORTHO05D005428 2.2e-25 119.4 100 61.0
Atru.chr11.1210 Acer truncatum HOM05D005264 ORTHO05D005428 2.9e-25 119.0 100 77.0
BcaC01g01222 Brassica carinata HOM05D005264 ORTHO05D005428 4.9e-25 118.2 100 61.0
C03p89560 Brassica napus HOM05D005264 ORTHO05D005428 4.9e-25 118.2 100 61.0
BolC3t21270H Brassica oleracea HOM05D005264 ORTHO05D005428 4.9e-25 118.2 100 61.0
Aa31LG10G3950 Aethionema arabicum HOM05D005264 ORTHO05D005428 1.4e-24 116.7 100 61.0
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 4.1e-24 115.2 101 60.4
Mapoly0154s0004 Marchantia polymorpha HOM05D005264 ORTHO05D005428 7.1e-24 114.4 106 57.5
Pp3c17_960 Physcomitrium patens HOM05D005264 ORTHO05D005428 2.3e-22 109.4 107 56.1
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 7.3e-21 104.4 101 58.4
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 1.8e-19 99.8 97 57.7
Ciclev10031922m.g Citrus clementina HOM05D005264 ORTHO05D005428 7.6e-18 94.4 135 44.4
Dinv24635 Davidia involucrata HOM05D005264 ORTHO05D005428 1.1e-16 90.5 100 52.0
SEGI_00750 Sequoiadendron giganteum HOM05D005264 ORTHO05D005428 5.1e-14 81.6 74 56.8
A09p24890 Brassica napus HOM05D000282 ORTHO05D005428 1.6e-12 76.6 50 70.0
Lsat_1_v5_gn_9_89240 Lactuca sativa HOM05D005264 ORTHO05D005428 1.6e-12 76.6 50 72.0
A09p17330 Brassica napus HOM05D000282 ORTHO05D005428 2.1e-12 76.3 50 68.0
A09p31950 Brassica napus HOM05D000282 ORTHO05D005428 2.1e-12 76.3 50 68.0
C03p52890 Brassica napus HOM05D005264 ORTHO05D005428 2.1e-12 76.3 50 68.0
C06p23970 Brassica napus HOM05D000282 ORTHO05D005428 2.1e-12 76.3 50 68.0
BraA06t25936Z Brassica rapa HOM05D000282 ORTHO05D005428 2.1e-12 76.3 50 68.0
BraA09t37361Z Brassica rapa HOM05D000282 ORTHO05D005428 2.1e-12 76.3 50 68.0
A10p10210 Brassica napus HOM05D000282 ORTHO05D005428 1.4e-11 73.6 50 64.0
BraA10t43100Z Brassica rapa HOM05D000282 ORTHO05D005428 1.4e-11 73.6 50 64.0
A02p38960 Brassica napus HOM05D000282 ORTHO05D005428 2.4e-11 72.8 50 66.0
A05p04440 Brassica napus HOM05D000282 ORTHO05D005428 2.4e-11 72.8 50 66.0
BraA03t13866Z Brassica rapa HOM05D000282 ORTHO05D005428 2.4e-11 72.8 50 66.0
A09p66890 Brassica napus HOM05D005264 ORTHO05D005428 5.3e-11 71.6 50 64.0
AUR62015185 Chenopodium quinoa HOM05D005264 ORTHO05D005428 9.0e-11 70.9 130 38.5
A03p47520 Brassica napus HOM05D000282 ORTHO05D005428 5.8e-10 68.2 50 62.0
A03p65660 Brassica napus HOM05D005264 ORTHO05D005428 5.8e-10 68.2 50 62.0
A05p28360 Brassica napus HOM05D000282 ORTHO05D005428 5.8e-10 68.2 50 62.0
A07p35900 Brassica napus HOM05D000282 ORTHO05D000272 5.8e-10 68.2 50 62.0
A10p17030 Brassica napus HOM05D005264 ORTHO05D005428 5.8e-10 68.2 50 62.0
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 7.6e-10 67.8 75 46.7
CDE04G3789 Ceratophyllum demersum HOM05D005264 ORTHO05D005428 2.2e-09 66.2 38 73.7
AUR62044527 Chenopodium quinoa HOM05D005264 ORTHO05D005428 1.6e-07 60.1 122 38.5
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 1.0e-06 57.4 27 85.2
Actinidia04089 Actinidia chinensis HOM05D005264 ORTHO05D005428 1.3e-06 57.0 27 85.2
A03p37140 Brassica napus HOM05D000282 ORTHO05D005428 1.3e-06 57.0 36 63.9
Gohir.D04G103133 Gossypium hirsutum HOM05D005264 ORTHO05D005428 3.0e-06 55.8 27 81.5
C06p05330 Brassica napus HOM05D005264 ORTHO05D005428 5.1e-06 55.1 41 63.4
Glyma.01G117401 Glycine max HOM05D005264 ORTHO05D005428 6.6e-06 54.7 27 81.5


User provided reference genes

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