Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 2519.6 1277 100.0
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 2040.8 1295 80.6
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1847.4 1282 75.5
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1690.6 1334 64.9
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1689.9 1316 65.2
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1661.7 1330 64.7
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1634.4 1258 65.6
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1619.8 1326 63.2
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1605.5 1398 61.1
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1600.1 1335 63.4
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1597.4 1335 63.4
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1595.5 1331 62.4
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1592.0 1343 62.8
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1580.5 1330 61.9
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1570.1 1311 62.0
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1569.7 1335 61.3
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1567.4 1332 61.5
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1559.7 1334 61.2
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1558.5 1327 60.2
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1558.5 1332 61.0
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1557.0 1304 62.4
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1551.6 1339 59.8
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1548.5 1478 57.6
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1545.4 1297 61.4
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1540.0 1335 60.3
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1538.1 1255 63.2
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1535.0 1329 60.3
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1534.6 1332 60.1
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1534.6 1329 60.4
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1533.9 1328 60.5
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1530.0 1338 60.7
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1520.0 1326 59.4
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1519.6 1324 59.9
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1516.9 1332 60.1
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1510.4 1333 59.2
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1506.5 1333 59.0
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1504.2 1333 59.0
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1503.0 1372 58.2
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1500.7 1327 59.8
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1499.6 1332 59.5
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1499.2 1326 59.4
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1496.1 1305 59.3
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1496.1 1333 58.6
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1483.0 1304 59.2
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1481.8 1344 58.0
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1473.0 1329 58.0
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1471.8 1331 57.3
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1471.1 1324 57.9
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1467.6 1326 57.6
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1463.4 1328 58.5
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1463.0 1331 57.9
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1463.0 1336 58.6
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1460.7 1335 57.5
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1457.6 1331 56.9
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1457.6 1325 58.0
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1456.4 1328 58.1
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1447.6 1328 57.5
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1445.3 1335 56.9
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1444.9 1328 57.9
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1441.0 1330 56.4
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1438.7 1335 57.4
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1437.6 1334 57.0
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1435.6 1331 57.6
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1428.3 1343 56.8
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1428.3 1340 56.9
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1427.5 1329 57.6
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1427.2 1334 58.5
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1426.8 1328 56.5
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1426.4 1330 57.4
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1424.5 1215 61.3
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1419.1 1215 61.0
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1416.7 1332 57.0
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1385.9 1325 56.5
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1375.5 1231 58.8
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1365.1 1334 54.5
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1328.2 1325 54.9
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1325.1 1327 54.3
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1316.2 1325 54.0
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1312.0 1280 54.1
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1300.4 1319 53.5
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1292.7 1319 53.2
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1291.2 1316 52.9
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1284.6 1315 53.5
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1284.2 1315 53.5
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1280.4 1314 52.9
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1274.2 1314 52.4
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1274.2 1314 52.4
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1273.8 1290 53.5
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1232.2 1288 52.3
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1198.7 1297 50.7
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1188.3 1298 50.4
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1174.8 1339 47.8
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1154.4 1065 57.5
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1127.1 985 60.9
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1115.5 893 63.6
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1105.9 987 59.7
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1087.4 858 65.2
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 1.1e-299 1033.9 1215 48.4
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 4.2e-264 915.6 1263 44.1
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 1.8e-259 900.2 1340 40.1
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 5.0e-241 839.0 1258 40.1
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 2.6e-237 826.6 1282 39.7
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 5.9e-226 788.9 1337 37.9
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.2e-223 781.2 949 46.4
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 4.0e-222 776.2 1142 41.0
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 2.8e-151 540.8 585 48.2
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 4.8e-151 540.0 481 57.8
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 8.2e-143 512.7 582 50.3
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 2.0e-112 411.8 1086 28.5
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.7e-95 355.5 328 55.5
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 6.0e-93 347.1 290 61.4
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 1.1e-91 342.8 318 57.5
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.9e-91 342.0 362 53.9
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 8.3e-87 326.6 1056 29.1
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 1.2e-74 286.2 267 60.7
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 6.6e-60 237.3 225 53.3
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.3e-59 235.0 234 53.8
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 1.4e-57 229.6 302 42.7
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.5e-51 209.5 185 57.8
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 3.1e-49 201.8 293 41.6
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 4.5e-48 198.0 148 69.6
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 2.5e-35 155.6 127 63.8
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 1.7e-31 142.9 119 61.3
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 6.9e-25 120.9 643 25.0
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 7.9e-21 107.5 119 48.7
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 7.9e-21 107.5 97 54.6
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 1.6e-13 83.2 74 54.1
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 1.8e-12 79.7 107 43.9
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.0e-07 61.6 66 57.6


User provided reference genes

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