Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0066721 Helianthus annuus HOM05D002543 ORTHO05D025511 1.1e-40 169.5 82 100.0
HanXRQChr05g0160901 Helianthus annuus HOM05D002543 ORTHO05D025511 2.4e-32 141.7 73 93.2
HanXRQChr16g0532881 Helianthus annuus HOM05D002543 ORTHO05D002990 1.3e-28 129.4 62 93.5
HanXRQChr11g0337781 Helianthus annuus HOM05D000522 ORTHO05D000565 2.8e-28 128.3 73 87.7
Oeu053729.3 Olea europaea HOM05D002543 ORTHO05D002990 3.1e-27 124.8 70 78.6
ECA248G3036 Erigeron canadensis HOM05D002543 ORTHO05D002990 4.0e-27 124.4 61 93.4
HanXRQChr01g0008121 Helianthus annuus HOM05D002543 ORTHO05D002990 4.0e-27 124.4 61 93.4
Lsat_1_v5_gn_5_157440 Lactuca sativa HOM05D002543 ORTHO05D002990 4.0e-27 124.4 61 93.4
HanXRQChr13g0388191 Helianthus annuus HOM05D002543 ORTHO05D002990 1.2e-26 122.9 61 90.2
CiPaw.07G031800 Carya illinoinensis HOM05D002543 ORTHO05D002990 2.0e-26 122.1 61 86.9
MD04G1191000 Malus domestica HOM05D002543 ORTHO05D002990 2.0e-26 122.1 61 86.9
Potri.005G010266 Populus trichocarpa HOM05D002543 ORTHO05D002990 2.0e-26 122.1 61 88.5
MD12G1203600 Malus domestica HOM05D002543 ORTHO05D002990 2.6e-26 121.7 61 86.9
Prupe.6G309500 Prunus persica HOM05D002543 ORTHO05D002990 2.6e-26 121.7 61 86.9
Aa31LG1G5780 Aethionema arabicum HOM05D002543 ORTHO05D002990 3.4e-26 121.3 71 76.1
Haze_04051 Corylus avellana HOM05D002543 ORTHO05D002990 3.4e-26 121.3 61 85.2
MBI19_g32691_MAGBIO Magnolia biondii HOM05D002543 ORTHO05D002990 4.5e-26 120.9 61 86.9
FvH4_6g07910 Fragaria vesca HOM05D002543 ORTHO05D002990 5.8e-26 120.6 61 85.2
FAN02G0698 Fragaria x ananassa HOM05D002543 ORTHO05D002990 5.8e-26 120.6 61 85.2
FAN05G0666 Fragaria x ananassa HOM05D002543 ORTHO05D002990 5.8e-26 120.6 61 85.2
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 5.8e-26 120.6 61 85.2
FAN14G2557 Fragaria x ananassa HOM05D002543 ORTHO05D002990 5.8e-26 120.6 61 85.2
RcHm_v2.0_Chr3g0457611 Rosa chinensis HOM05D002543 ORTHO05D002990 5.8e-26 120.6 61 85.2
vmacro01588 Vaccinium macrocarpon HOM05D002543 ORTHO05D002990 5.8e-26 120.6 61 86.9
GSVIVG01031272001 Vitis vinifera HOM05D002543 ORTHO05D002990 5.8e-26 120.6 71 76.1
Cpa.g.sc48.194 Carica papaya HOM05D002543 ORTHO05D002990 7.6e-26 120.2 71 76.1
Cfa006711 Carpinus fangiana HOM05D002543 ORTHO05D002990 7.6e-26 120.2 61 85.2
Potri.013G006100 Populus trichocarpa HOM05D002543 ORTHO05D002990 7.6e-26 120.2 61 86.9
Sc09g0002550 Simmondsia chinensis HOM05D002543 ORTHO05D002990 7.6e-26 120.2 64 79.7
TWI56G1324 Tripterygium wilfordii HOM05D002543 ORTHO05D002990 7.6e-26 120.2 61 85.2
MSTRG.5153 Avicennia marina HOM05D002543 ORTHO05D002990 9.9e-26 119.8 61 86.9
ClCG01G010830 Citrullus lanatus HOM05D002543 ORTHO05D002990 9.9e-26 119.8 61 86.9
Sed0006506 Sechium edule HOM05D002543 ORTHO05D002990 9.9e-26 119.8 61 86.9
BcaB07g34128 Brassica carinata HOM05D002543 ORTHO05D002990 1.3e-25 119.4 61 85.2
Cc02_g35140 Coffea canephora HOM05D002543 ORTHO05D002990 1.3e-25 119.4 61 85.2
QL03p017109 Quercus lobata HOM05D002543 ORTHO05D002990 1.3e-25 119.4 61 86.9
QL03p017392 Quercus lobata HOM05D002543 ORTHO05D002990 1.3e-25 119.4 61 86.9
AL1G19830 Arabidopsis lyrata HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 83.6
AT1G09340 Arabidopsis thaliana HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 83.6
BcaC05g24788 Brassica carinata HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 83.6
A06p06060 Brassica napus HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 83.6
C05p07330 Brassica napus HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 83.6
BolC5t29491H Brassica oleracea HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 83.6
BraA06t23817Z Brassica rapa HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 83.6
Carub.0001s0868 Capsella rubella HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 83.6
CARHR009310 Cardamine hirsuta HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 83.6
Thhalv10007937m.g Eutrema salsugineum HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 83.6
Hma1.2p1_0008F-1.1_g005360 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 85.2
Hma1.2p1_1808F.1_g303465 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 85.2
Lju99A11T81 Lonicera japonica HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 85.2
Lalb_Chr04g0260351 Lupinus albus HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 85.2
Nn3g21830 Nelumbo nucifera HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 83.6
Sp1g07950 Schrenkiella parvula HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 83.6
VMungo1383G0020 Vigna mungo HOM05D002543 ORTHO05D002990 1.7e-25 119.0 61 85.2
arahy.Tifrunner.gnm1.ann1.E4P10T Arachis hypogaea HOM05D002543 ORTHO05D002990 2.2e-25 118.6 61 85.2
arahy.Tifrunner.gnm1.ann1.GJPT5D Arachis hypogaea HOM05D002543 ORTHO05D002990 2.2e-25 118.6 61 85.2
Nitab4.5_0002084g0070 Nicotiana tabacum HOM05D002543 ORTHO05D002990 2.2e-25 118.6 61 85.2
Nitab4.5_0006914g0020 Nicotiana tabacum HOM05D002543 ORTHO05D002990 2.2e-25 118.6 61 85.2
Peaxi162Scf00413g00612 Petunia axillaris HOM05D002543 ORTHO05D002990 2.2e-25 118.6 61 85.2
THA.LOC104816855 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 2.2e-25 118.6 61 83.6
HanXRQChr03g0066731 Helianthus annuus HOM05D002543 ORTHO05D002990 2.9e-25 118.2 61 90.2
THA.LOC104820540 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 2.9e-25 118.2 61 83.6
MSTRG.27925 Avicennia marina HOM05D002543 ORTHO05D002990 3.8e-25 117.9 61 85.2
BcaC07g41890 Brassica carinata HOM05D002543 ORTHO05D002990 3.8e-25 117.9 61 82.0
Hma1.2p1_0045F.1_g026490 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 3.8e-25 117.9 61 85.2
Rhsim11G0098700 Rhododendron simsii HOM05D002543 ORTHO05D002990 3.8e-25 117.9 61 85.2
TAR362G1343 Trochodendron aralioides HOM05D002543 ORTHO05D002990 3.8e-25 117.9 61 85.2
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 3.8e-25 117.9 61 83.6
Actinidia16883 Actinidia chinensis HOM05D002543 ORTHO05D002990 4.9e-25 117.5 61 85.2
Aqoxy7G03338 Aquilegia oxysepala HOM05D002543 ORTHO05D002990 4.9e-25 117.5 61 83.6
Glyma.19G227700 Glycine max HOM05D002543 ORTHO05D002990 4.9e-25 117.5 61 83.6
CBR_g216 Chara braunii HOM05D002543 ORTHO05D002990 6.4e-25 117.1 61 83.6
MELO3C008920.2 Cucumis melo HOM05D002543 ORTHO05D002990 6.4e-25 117.1 61 85.2
CsaV3_4G030580 Cucumis sativus L. HOM05D002543 ORTHO05D002990 6.4e-25 117.1 61 85.2
Migut.N00952 Erythranthe guttata HOM05D002543 ORTHO05D002990 6.4e-25 117.1 61 83.6
Sabra13G0005200 Salix brachista HOM05D002543 ORTHO05D002990 6.4e-25 117.1 61 83.6
Manes.09G179000 Manihot esculenta HOM05D002543 ORTHO05D002990 8.4e-25 116.7 61 83.6
Mapoly0014s0058 Marchantia polymorpha HOM05D002543 ORTHO05D002990 8.4e-25 116.7 61 85.2
PSO210G0417 Papaver somniferum HOM05D002543 ORTHO05D002990 8.4e-25 116.7 61 85.2
PSO761G0053 Papaver somniferum HOM05D002543 ORTHO05D002990 8.4e-25 116.7 61 85.2
PGR031G1645 Punica granatum HOM05D002543 ORTHO05D002990 8.4e-25 116.7 61 83.6
SMO169G0181 Selaginella moellendorffii HOM05D002543 ORTHO05D002990 8.4e-25 116.7 61 85.2
Atru.chr2.231 Acer truncatum HOM05D002543 ORTHO05D002990 1.1e-24 116.3 61 85.2
ATR0693G343 Amborella trichopoda HOM05D002543 ORTHO05D002990 1.1e-24 116.3 61 85.2
Ciclev10001494m.g Citrus clementina HOM05D002543 ORTHO05D002990 1.1e-24 116.3 61 83.6
COL.COLO4_05521 Corchorus olitorius HOM05D002543 ORTHO05D002990 1.1e-24 116.3 61 85.2
Glyma.03G230000 Glycine max HOM05D002543 ORTHO05D002990 1.1e-24 116.3 61 82.0
Phvul.001G223800 Phaseolus vulgaris HOM05D002543 ORTHO05D002990 1.1e-24 116.3 61 83.6
Ca_09289_v3 Cicer arietinum L. HOM05D002543 ORTHO05D002990 1.4e-24 115.9 61 83.6
Lj1g0015240 Lotus japonicus HOM05D002543 ORTHO05D002990 1.4e-24 115.9 61 83.6
Medtr7g111860 Medicago truncatula HOM05D002543 ORTHO05D002990 1.4e-24 115.9 61 83.6
Psat3g014320 Pisum sativum HOM05D002543 ORTHO05D002990 1.4e-24 115.9 61 83.6
Thecc.05G326100 Theobroma cacao HOM05D002543 ORTHO05D002990 1.4e-24 115.9 61 82.0
TPR.G1672 Trifolium pratense HOM05D002543 ORTHO05D002990 1.4e-24 115.9 61 83.6
Duzib177G1067 Durio zibethinus HOM05D002543 ORTHO05D002990 1.9e-24 115.5 61 82.0
Gohir.A11G274700 Gossypium hirsutum HOM05D002543 ORTHO05D002990 1.9e-24 115.5 61 82.0
Gohir.D11G284900 Gossypium hirsutum HOM05D002543 ORTHO05D002990 1.9e-24 115.5 61 82.0
Gorai.007G308300 Gossypium raimondii HOM05D002543 ORTHO05D002990 1.9e-24 115.5 61 82.0
SalBow7G2281 Salvia bowleyana HOM05D002543 ORTHO05D002990 1.9e-24 115.5 61 82.0
CANSAT54G0111 Cannabis sativa HOM05D002543 ORTHO05D002990 2.4e-24 115.2 61 82.0
CAN.G65.169 Capsicum annuum HOM05D002543 ORTHO05D002990 3.2e-24 114.8 61 82.0
CDE08G1278 Ceratophyllum demersum HOM05D002543 ORTHO05D002990 3.2e-24 114.8 61 80.3
Solyc06g073260.3 Solanum lycopersicum HOM05D002543 ORTHO05D002990 3.2e-24 114.8 61 82.0
Sopen06g029620 Solanum pennellii HOM05D002543 ORTHO05D002990 3.2e-24 114.8 61 82.0
PGSC0003DMG400026913 Solanum tuberosum HOM05D002543 ORTHO05D002990 3.2e-24 114.8 61 82.0
SGA_v2.0_scaffold5G02903 Striga asiatica HOM05D002543 ORTHO05D002990 3.2e-24 114.8 61 83.6
Actinidia35506 Actinidia chinensis HOM05D002543 ORTHO05D002990 4.2e-24 114.4 59 84.7
Eucgr.H03311 Eucalyptus grandis HOM05D002543 ORTHO05D002990 4.2e-24 114.4 61 82.0
Dinv30917 Davidia involucrata HOM05D002543 ORTHO05D002990 5.4e-24 114.0 61 80.3
Dinv30918 Davidia involucrata HOM05D002543 ORTHO05D002990 5.4e-24 114.0 61 80.3
CDE02G1117 Ceratophyllum demersum HOM05D002543 ORTHO05D002990 7.1e-24 113.6 61 78.7
unitig_749.g13404 Utricularia gibba HOM05D002543 ORTHO05D002990 7.1e-24 113.6 61 82.0
Zm00001eb261910 Zea mays HOM05D002543 ORTHO05D002990 7.1e-24 113.6 71 71.8
Cre10.g435800 Chlamydomonas reinhardtii HOM05D002543 ORTHO05D002990 1.2e-23 112.8 61 80.3
Ah.04g158450 Amaranthus hybridus HOM05D002543 ORTHO05D002990 1.6e-23 112.5 61 77.0
EL10Ac4g09505 Beta vulgaris HOM05D002543 ORTHO05D002990 2.1e-23 112.1 71 69.0
CSS0021124 Camellia sinensis var. sinensis HOM05D002543 ORTHO05D002990 2.1e-23 112.1 61 78.7
AUR62000430 Chenopodium quinoa HOM05D002543 ORTHO05D002990 3.5e-23 111.3 61 75.4
AUR62006776 Chenopodium quinoa HOM05D002543 ORTHO05D002990 3.5e-23 111.3 61 75.4
Manes.16G048915 Manihot esculenta HOM05D002543 ORTHO05D002990 3.5e-23 111.3 65 78.5
Os12g0420200 Oryza sativa ssp. japonica HOM05D002543 ORTHO05D002990 3.5e-23 111.3 61 78.7
Hund21861 Selenicereus undatus HOM05D002543 ORTHO05D002990 3.5e-23 111.3 71 70.4
Pp3c22_14530 Physcomitrium patens HOM05D002543 ORTHO05D002990 4.6e-23 110.9 61 78.7
DCAR_005274 Daucus carota HOM05D002543 ORTHO05D002990 2.3e-22 108.6 61 75.4
BcaC07g41887 Brassica carinata HOM05D002543 ORTHO05D002990 3.0e-22 108.2 57 78.9
AagrBONN_evm.TU.Sc2ySwM_117.679 Anthoceros agrestis HOM05D002543 ORTHO05D002990 1.9e-21 105.5 61 73.8
FAN06G2418 Fragaria x ananassa HOM05D002543 ORTHO05D025511 5.6e-21 104.0 69 66.7
FAN02G2249 Fragaria x ananassa HOM05D002543 ORTHO05D025511 2.8e-20 101.7 62 71.0
FvH4_4g12070 Fragaria vesca HOM05D002543 ORTHO05D025511 2.4e-19 98.6 61 70.5
C08p49510 Brassica napus HOM05D002543 ORTHO05D002990 2.6e-18 95.1 75 60.0
FAN09G3392 Fragaria x ananassa HOM05D002543 ORTHO05D002990 1.1e-16 89.7 62 62.9
BcaC07g41896 Brassica carinata HOM05D002543 ORTHO05D002990 3.2e-16 88.2 67 62.7
Oeu056813.1 Olea europaea HOM05D002067 ORTHO05D002244 2.7e-15 85.1 50 74.0
BcaC07g41892 Brassica carinata HOM05D002543 ORTHO05D002990 1.0e-14 83.2 63 61.9
HanXRQChr09g0252291 Helianthus annuus HOM05D002543 ORTHO05D002990 4.2e-08 61.2 32 87.5
MSTRG.21560 Avicennia marina HOM05D002543 ORTHO05D002990 2.1e-07 58.9 59 44.1
ECA247G0844 Erigeron canadensis HOM05D002543 ORTHO05D002990 1.0e-06 56.6 49 46.9
Lsat_1_v5_gn_9_3701 Lactuca sativa HOM05D002543 ORTHO05D002990 1.0e-06 56.6 49 46.9
Atru.chr5.1437 Acer truncatum HOM05D002543 ORTHO05D002990 1.8e-06 55.8 59 40.7
CARHR173460 Cardamine hirsuta HOM05D002543 ORTHO05D002990 1.8e-06 55.8 49 46.9
Os07g0212200 Oryza sativa ssp. japonica HOM05D002543 ORTHO05D002990 1.8e-06 55.8 49 46.9
Pp3c3_30330 Physcomitrium patens HOM05D002543 ORTHO05D002990 1.8e-06 55.8 71 36.6
AL5G45980 Arabidopsis lyrata HOM05D002543 ORTHO05D002990 2.3e-06 55.5 49 46.9
AT3G63140 Arabidopsis thaliana HOM05D002543 ORTHO05D002990 2.3e-06 55.5 49 46.9
Carub.0005s2981 Capsella rubella HOM05D002543 ORTHO05D002990 2.3e-06 55.5 49 46.9
Thhalv10006498m.g Eutrema salsugineum HOM05D002543 ORTHO05D002990 2.3e-06 55.5 49 46.9
HanXRQChr15g0466671 Helianthus annuus HOM05D002543 ORTHO05D002990 2.3e-06 55.5 49 44.9
Aa31LG10G16980 Aethionema arabicum HOM05D002543 ORTHO05D002990 3.0e-06 55.1 59 40.7
HPP92_010647 Vanilla planifolia HOM05D002543 ORTHO05D002990 3.0e-06 55.1 59 42.4
HPP92_010724 Vanilla planifolia HOM05D002543 ORTHO05D002990 3.0e-06 55.1 59 42.4
A04p00260 Brassica napus HOM05D002543 ORTHO05D002990 3.9e-06 54.7 49 46.9
C04p30080 Brassica napus HOM05D002543 ORTHO05D002990 3.9e-06 54.7 49 46.9
BolC4t24540H Brassica oleracea HOM05D002543 ORTHO05D002990 3.9e-06 54.7 49 46.9
BraA04t15745Z Brassica rapa HOM05D002543 ORTHO05D002990 3.9e-06 54.7 49 46.9
Nitab4.5_0000458g0020 Nicotiana tabacum HOM05D002543 ORTHO05D002990 3.9e-06 54.7 49 44.9
Nitab4.5_0008435g0010 Nicotiana tabacum HOM05D002543 ORTHO05D002990 3.9e-06 54.7 49 44.9
Rhsim01G0274600 Rhododendron simsii HOM05D002543 ORTHO05D002990 3.9e-06 54.7 59 39.0
Sp5g00390 Schrenkiella parvula HOM05D002543 ORTHO05D002990 3.9e-06 54.7 49 46.9
Ciclev10020449m.g Citrus clementina HOM05D002543 ORTHO05D002990 5.1e-06 54.3 71 33.8
CBR_g28014 Chara braunii HOM05D002543 ORTHO05D002990 6.7e-06 53.9 55 47.3
DCAR_018419 Daucus carota HOM05D002543 ORTHO05D002990 6.7e-06 53.9 59 40.7
Migut.D00296 Erythranthe guttata HOM05D002543 ORTHO05D002990 6.7e-06 53.9 54 44.4
Lj5g0000370 Lotus japonicus HOM05D002543 ORTHO05D002990 6.7e-06 53.9 68 36.8
AUR62015876 Chenopodium quinoa HOM05D002543 ORTHO05D002990 8.7e-06 53.5 49 46.9


User provided reference genes

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