Gene: Sopen06g029620

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g029620
  • Transcript Identifier Sopen06g029620.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 55874584-55878102 : negative

Gene Family Information

  • ID HOM05D002543
  • #Genes/#Species 266/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g029620.1

Descriptions

  • Description Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes. | chloroplast RNA binding (CRB) | FUNCTIONS IN: coenzyme binding, binding, catalytic activity | INVOLVED IN: in 6 processes | LOCATED IN: in 10 components | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase , NAD(P)-binding domain | BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010468
ISO
PLAZA Integrative Orthologyregulation of gene expression AT1G09340
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT1G09340
GO:0007623
ISO
PLAZA Integrative Orthologycircadian rhythm AT1G09340
GO:0032544
ISO
PLAZA Integrative Orthologyplastid translation AT1G09340
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT1G09340
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT1G09340
GO:0005996
ISO
PLAZA Integrative Orthologymonosaccharide metabolic process AT1G09340
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT1G09340
GO:0042631
ISO
PLAZA Integrative Orthologycellular response to water deprivation AT1G09340
GO:0006364
ISO
PLAZA Integrative OrthologyrRNA processing AT1G09340
GO:0009611
ISO
PLAZA Integrative Orthologyresponse to wounding AT1G09340
GO:0045727
ISO
PLAZA Integrative Orthologypositive regulation of translation AT1G09340

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G09340
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT1G09340
GO:0010297
ISO
PLAZA Integrative Orthologyheteropolysaccharide binding AT1G09340
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G09340
GO:0003824
IEA
InterProcatalytic activity
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT1G09340

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010319
ISO
PLAZA Integrative Orthologystromule AT1G09340
GO:0010287
ISO
PLAZA Integrative Orthologyplastoglobule AT1G09340
GO:0005777
ISO
PLAZA Integrative Orthologyperoxisome AT1G09340
GO:0005840
ISO
PLAZA Integrative Orthologyribosome AT1G09340
GO:0000427
ISO
PLAZA Integrative Orthologyplastid-encoded plastid RNA polymerase complex AT1G09340
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT1G09340
GO:0048046
ISO
PLAZA Integrative Orthologyapoplast AT1G09340
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G09340
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G09340
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT1G09340
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT1G09340

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001509 NAD-dependent epimerase/dehydratase
IPR036291 NAD(P)-binding domain superfamily
Mapman id Description
16.11.1.5 RNA processing.organelle machinery.ribonuclease activities.endoribonuclease (CSP41)