Gene: AT1G09340

General Information

tid AT1G09340.1
symbol CRB
Alias CSP41B,CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA,HIP1.3,heteroglycan-interacting protein 1.3
full_name chloroplast RNA binding
uniprot Q9SA52

Computational description chloroplast RNA binding (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1); Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366; Bacteria - 3891; Metazoa - 108; Fungi - 58; Plants - 234; Viruses - 3; Other Eukaryotes - 1276 (source: NCBI BLink).

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010468	IMP	Gene Ontology	regulation of gene expression	1
GO:0042742	IEP	GOA Database	defense response to bacterium
GO:0005975	IEA	GOA Database	carbohydrate metabolic process
GO:0006364	IBA IEA	GOA Database	rRNA processing
GO:0006364	IGI	Gene Ontology	rRNA processing	2
GO:0000272	IEA	GOA Database	polysaccharide catabolic process
GO:0009611	IEP	Gene Ontology	response to wounding	3
GO:0042631	IEP	Gene Ontology	cellular response to water deprivation	3
GO:0009409	IEP	Gene Ontology	response to cold	4
GO:0007623	IMP, IEP	Gene Ontology	circadian rhythm	5
GO:0009658	IMP	Gene Ontology	chloroplast organization	5
GO:0032544	IMP	Gene Ontology	plastid translation	6
GO:0045727	IMP	Gene Ontology	positive regulation of translation	6
GO:0045893	IMP	Gene Ontology	positive regulation of transcription, DNA-templated	6
GO:0005996	IMP	Gene Ontology	monosaccharide metabolic process	7

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003729	IDA	Gene Ontology	mRNA binding	8
GO:0003677	IEA	GOA Database	DNA binding
GO:0003677	IDA	Gene Ontology	DNA binding	1
GO:0003723	IBA IEA	GOA Database	RNA binding
GO:0003723	IDA	Gene Ontology	RNA binding	3
GO:0019843	IEA	GOA Database	rRNA binding
GO:0003824	IEA	Gene Ontology	catalytic activity
GO:0003824	IEA	InterPro	catalytic activity
GO:0005515	IPI	Gene Ontology	protein binding	6
GO:0010297	IDA	Gene Ontology	heteropolysaccharide binding	7

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009507	IDA IEA	GOA Database	chloroplast
GO:0009507	HDA	Gene Ontology	chloroplast	9
GO:0005829	IBA	GOA Database	cytosol
GO:0005829	HDA	Gene Ontology	cytosol	10
GO:0005576	HDA	Gene Ontology	extracellular region	11
GO:0005737	IEA	GOA Database	cytoplasm
GO:0010287	IDA IEA	GOA Database	plastoglobule
GO:0010287	HDA	Gene Ontology	plastoglobule	12
GO:0005773	IDA	GOA Database	vacuole
GO:0009570	IDA	GOA Database	chloroplast stroma
GO:0009570	HDA	Gene Ontology	chloroplast stroma	13
GO:0005777	IDA	GOA Database	peroxisome
GO:0005777	HDA	Gene Ontology	peroxisome	14
GO:0009941	IDA	GOA Database	chloroplast envelope
GO:0009941	HDA	Gene Ontology	chloroplast envelope	15
GO:0048046	IDA	GOA Database	apoplast
GO:0048046	HDA	Gene Ontology	apoplast	16
GO:0009506	IDA	GOA Database	plasmodesma
GO:0009506	HDA	Gene Ontology	plasmodesma	17
GO:0009536	IEA	GOA Database	plastid
GO:0005794	ISM	Gene Ontology	Golgi apparatus
GO:0000325	HDA	Gene Ontology	plant-type vacuole	18
GO:0010319	IDA	Gene Ontology	stromule	3
GO:0005840	IDA	Gene Ontology	ribosome	2
GO:0000427	IMP	Gene Ontology	plastid-encoded plastid RNA polymerase complex	1

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR036291	NAD(P)-binding domain superfamily
IPR001509	NAD-dependent epimerase/dehydratase

Mapman id	Description
16.11.1.5	RNA processing.organelle machinery.ribonuclease activities.endoribonuclease (CSP41)